Wall clock time and date at job start Tue Mar 31 2020 11:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42897 * 113.99823 * 2 1 4 4 C 1.53007 * 109.46963 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47111 * 65.58490 * 4 3 2 6 6 C 1.36786 * 119.99886 * 265.13676 * 5 4 3 7 7 H 1.07999 * 120.00146 * 140.30352 * 6 5 4 8 8 C 1.39077 * 120.00152 * 320.30090 * 6 5 4 9 9 N 1.31347 * 119.99821 * 162.70280 * 8 6 5 10 10 Si 1.86800 * 119.99852 * 342.70126 * 8 6 5 11 11 H 1.48503 * 109.47043 * 91.87582 * 10 8 6 12 12 H 1.48501 * 109.47054 * 211.87700 * 10 8 6 13 13 H 1.48505 * 109.47151 * 331.87815 * 10 8 6 14 14 C 1.34775 * 119.99741 * 85.13988 * 5 4 3 15 15 O 1.21715 * 120.00269 * 4.48677 * 14 5 4 16 16 C 1.46805 * 119.99822 * 184.49155 * 14 5 4 17 17 C 1.35965 * 125.14704 * 173.73133 * 16 14 5 18 18 C 1.46202 * 106.07029 * 179.97438 * 17 16 14 19 19 C 1.39730 * 134.17495 * 179.97438 * 18 17 16 20 20 C 1.36627 * 119.71065 * 180.02562 * 19 18 17 21 21 C 1.50698 * 119.77940 * 179.97438 * 20 19 18 22 22 C 1.38840 * 120.43673 * 359.69331 * 20 19 18 23 23 C 1.50697 * 119.62492 * 180.31674 * 22 20 19 24 24 C 1.37819 * 120.74869 * 0.60578 * 22 20 19 25 25 C 1.39007 * 119.85783 * 359.41069 * 24 22 20 26 26 O 1.34737 * 133.22511 * 180.25566 * 25 24 22 27 27 H 1.09003 * 109.47468 * 60.00049 * 1 2 3 28 28 H 1.09006 * 109.47260 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47079 * 300.00051 * 1 2 3 30 30 H 1.08995 * 109.47464 * 60.00486 * 3 2 1 31 31 H 1.09000 * 109.47363 * 300.00044 * 3 2 1 32 32 H 1.08996 * 109.47138 * 305.58386 * 4 3 2 33 33 H 1.09003 * 109.47074 * 185.58703 * 4 3 2 34 34 H 0.97003 * 119.99879 * 180.02562 * 9 8 6 35 35 H 1.07998 * 126.96055 * 359.95526 * 17 16 14 36 36 H 1.08001 * 120.14523 * 0.02562 * 19 18 17 37 37 H 1.09003 * 109.47016 * 90.00300 * 21 20 19 38 38 H 1.08999 * 109.46944 * 209.99949 * 21 20 19 39 39 H 1.08993 * 109.46992 * 329.99868 * 21 20 19 40 40 H 1.09003 * 109.46874 * 270.28609 * 23 22 20 41 41 H 1.08994 * 109.47239 * 30.28091 * 23 22 20 42 42 H 1.08997 * 109.47086 * 150.28875 * 23 22 20 43 43 H 1.07999 * 120.06942 * 179.68664 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9766 0.5772 -1.2586 6 6 4.1934 -0.7716 -1.3277 7 1 3.8938 -1.3224 -2.2071 8 6 4.7998 -1.4338 -0.2656 9 7 4.7080 -2.7404 -0.1679 10 14 5.7447 -0.4649 1.0219 11 1 4.8345 -0.1085 2.1398 12 1 6.8648 -1.2912 1.5398 13 1 6.2861 0.7750 0.4098 14 6 4.1690 1.3474 -2.3478 15 8 4.0556 2.5564 -2.2660 16 6 4.5151 0.7279 -3.6330 17 6 4.6134 1.3868 -4.8182 18 6 4.9769 0.3788 -5.8128 19 6 5.2222 0.4118 -7.1880 20 6 5.5495 -0.7404 -7.8453 21 6 5.8138 -0.7066 -9.3285 22 6 5.6459 -1.9410 -7.1547 23 6 6.0152 -3.1996 -7.8968 24 6 5.4020 -1.9959 -5.7994 25 6 5.0671 -0.8368 -5.1090 26 8 4.7844 -0.5817 -3.8166 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6886 1.8463 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.8507 0.5597 0.8348 33 1 3.9784 2.1755 0.0994 34 1 5.1306 -3.2023 0.5731 35 1 4.4548 2.4412 -4.9901 36 1 5.1533 1.3440 -7.7289 37 1 6.8730 -0.5192 -9.5047 38 1 5.5361 -1.6642 -9.7689 39 1 5.2234 0.0879 -9.7847 40 1 5.1101 -3.6848 -8.2620 41 1 6.6584 -2.9486 -8.7402 42 1 6.5440 -3.8755 -7.2249 43 1 5.4752 -2.9367 -5.2741 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457199239.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:09 Heat of formation + Delta-G solvation = -37.273058 kcal Electronic energy + Delta-G solvation = -26863.195324 eV Core-core repulsion = 23068.826228 eV Total energy + Delta-G solvation = -3794.369096 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.82123 -39.03775 -38.18162 -37.08300 -35.06743 -32.88285 -32.10039 -31.97878 -30.63800 -29.59262 -26.87399 -26.52985 -25.82501 -24.85419 -23.20588 -22.00283 -21.03046 -20.78402 -19.18070 -17.95040 -16.81827 -16.43359 -16.03881 -15.72344 -15.47819 -14.96439 -14.90678 -14.73142 -14.45543 -14.03345 -14.00233 -13.72070 -13.50369 -13.04171 -12.80316 -12.61349 -12.55050 -12.34889 -12.07965 -12.04657 -11.94676 -11.72482 -11.58940 -11.31827 -11.11907 -10.93955 -10.84230 -10.56325 -10.08478 -9.97760 -9.56127 -9.46167 -9.17283 -8.88465 -8.02136 -7.99989 -7.59507 -6.49324 -4.06689 1.10180 1.69421 2.41249 3.01949 3.18443 3.23440 3.27695 3.93384 4.01264 4.06129 4.14855 4.35593 4.83075 4.92807 5.01753 5.11756 5.22525 5.35132 5.50129 5.53343 5.58645 5.59226 5.64300 5.66230 5.70043 5.75764 5.79069 5.84308 5.86843 5.93872 5.96250 6.01466 6.13939 6.16185 6.26888 6.32800 6.57807 6.63537 6.78466 6.87074 7.02287 7.18373 7.70006 7.73033 7.96143 8.30150 8.83859 9.19029 9.44549 10.60204 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015364 B = 0.004159 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.958974 B = 6730.003925 C = 7274.655430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.360 6.360 3 C 0.055 3.945 4 C 0.095 3.905 5 N -0.428 5.428 6 C -0.326 4.326 7 H 0.122 0.878 8 C 0.075 3.925 9 N -0.845 5.845 10 Si 0.873 3.127 11 H -0.270 1.270 12 H -0.285 1.285 13 H -0.260 1.260 14 C 0.530 3.470 15 O -0.584 6.584 16 C 0.042 3.958 17 C -0.175 4.175 18 C -0.135 4.135 19 C -0.071 4.071 20 C -0.113 4.113 21 C -0.107 4.107 22 C -0.071 4.071 23 C -0.110 4.110 24 C -0.101 4.101 25 C 0.051 3.949 26 O -0.139 6.139 27 H 0.033 0.967 28 H 0.082 0.918 29 H 0.031 0.969 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.276 0.724 35 H 0.159 0.841 36 H 0.122 0.878 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.953 1.858 -9.765 9.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C -0.023 4.023 4 C -0.027 4.027 5 N -0.145 5.145 6 C -0.452 4.452 7 H 0.139 0.861 8 C -0.134 4.134 9 N -0.480 5.480 10 Si 0.700 3.300 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.184 1.184 14 C 0.320 3.680 15 O -0.472 6.472 16 C -0.009 4.009 17 C -0.196 4.196 18 C -0.136 4.136 19 C -0.089 4.089 20 C -0.113 4.113 21 C -0.164 4.164 22 C -0.071 4.071 23 C -0.167 4.167 24 C -0.119 4.119 25 C 0.002 3.998 26 O -0.038 6.038 27 H 0.052 0.948 28 H 0.100 0.900 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.087 0.913 35 H 0.176 0.824 36 H 0.140 0.860 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.862 1.848 -9.335 9.555 hybrid contribution 0.184 0.599 0.833 1.043 sum -0.678 2.446 -8.502 8.873 Atomic orbital electron populations 1.22672 0.82729 1.02223 0.98881 1.88193 1.17970 1.26612 1.95065 1.22844 0.94383 0.85345 0.99742 1.21906 0.92724 0.99520 0.88589 1.43638 1.54671 1.08317 1.07828 1.19337 1.39272 0.80064 1.06572 0.86121 1.25308 0.95552 0.95276 0.97254 1.69678 1.39566 1.07862 1.30846 0.87036 0.80130 0.81057 0.81750 1.19695 1.21123 1.18447 1.16955 0.83036 0.85438 0.82570 1.90720 1.59165 1.12729 1.84538 1.22154 1.01841 0.81099 0.95796 1.22420 1.07619 0.99613 0.89976 1.19903 1.05807 0.93298 0.94595 1.20058 0.99392 0.97825 0.91626 1.19225 1.03452 0.92618 0.96023 1.20729 1.01631 1.02442 0.91559 1.19402 1.00206 0.95140 0.92352 1.20779 1.01518 0.94461 0.99924 1.19801 1.03545 0.95780 0.92812 1.20007 1.00730 0.95480 0.83601 1.84790 1.69816 1.25448 1.23745 0.94793 0.89990 0.95016 0.93361 0.93056 0.89834 0.89277 0.91312 0.82387 0.86008 0.91607 0.91530 0.91892 0.91192 0.91333 0.91418 0.85006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.62 16 2 O -0.36 -7.59 10.43 -35.23 -0.37 -7.95 16 3 C 0.05 1.06 6.25 37.16 0.23 1.29 16 4 C 0.10 2.09 4.36 -4.04 -0.02 2.07 16 5 N -0.43 -10.59 2.13 -116.25 -0.25 -10.84 16 6 C -0.33 -8.72 8.29 -15.03 -0.12 -8.84 16 7 H 0.12 3.49 5.93 -52.49 -0.31 3.18 16 8 C 0.07 2.00 5.35 -17.45 -0.09 1.91 16 9 N -0.85 -23.42 13.95 55.50 0.77 -22.65 16 10 Si 0.87 20.40 24.92 -169.99 -4.24 16.16 16 11 H -0.27 -5.97 6.59 56.52 0.37 -5.60 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.26 -6.15 7.11 56.52 0.40 -5.75 16 14 C 0.53 12.98 7.57 -12.80 -0.10 12.88 16 15 O -0.58 -14.56 16.47 5.18 0.09 -14.47 16 16 C 0.04 0.97 6.78 -36.94 -0.25 0.72 16 17 C -0.17 -3.50 10.81 -37.20 -0.40 -3.91 16 18 C -0.14 -2.53 6.38 -105.20 -0.67 -3.20 16 19 C -0.07 -1.08 9.68 -39.61 -0.38 -1.46 16 20 C -0.11 -1.54 5.85 -104.98 -0.61 -2.15 16 21 C -0.11 -1.04 9.15 36.00 0.33 -0.71 16 22 C -0.07 -1.00 5.88 -104.55 -0.61 -1.61 16 23 C -0.11 -1.14 9.15 36.00 0.33 -0.81 16 24 C -0.10 -1.73 9.70 -39.45 -0.38 -2.11 16 25 C 0.05 1.03 7.41 -38.35 -0.28 0.75 16 26 O -0.14 -3.26 7.32 2.70 0.02 -3.24 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.08 1.89 3.33 -51.93 -0.17 1.71 16 33 H 0.09 1.83 7.51 -51.93 -0.39 1.44 16 34 H 0.28 7.12 8.31 -40.82 -0.34 6.79 16 35 H 0.16 2.85 8.06 -52.49 -0.42 2.43 16 36 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.56 6.69 -51.93 -0.35 0.21 16 39 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.59 6.68 -51.93 -0.35 0.25 16 42 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 43 H 0.13 2.13 8.06 -52.49 -0.42 1.70 16 LS Contribution 355.41 15.07 5.36 5.36 Total: -1.00 -31.00 355.41 -6.35 -37.34 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -5.80 Total: 3.85 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -1.93 Total: -3.55 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: 0.53 Total: -33.49 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -0.26 Total: -25.67 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.24 Total: 16.16 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.00 -6.35 -37.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457199239.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.071 kcal (2) G-P(sol) polarization free energy of solvation -30.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds