Wall clock time and date at job start Tue Mar 31 2020 11:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42897 * 113.99823 * 2 1 4 4 C 1.53007 * 109.46963 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47111 * 65.58490 * 4 3 2 6 6 C 1.36786 * 119.99886 * 265.13676 * 5 4 3 7 7 H 1.07999 * 120.00146 * 140.30352 * 6 5 4 8 8 C 1.39077 * 120.00152 * 320.30090 * 6 5 4 9 9 N 1.31347 * 119.99821 * 162.70280 * 8 6 5 10 10 Si 1.86800 * 119.99852 * 342.70126 * 8 6 5 11 11 H 1.48503 * 109.47043 * 91.87582 * 10 8 6 12 12 H 1.48501 * 109.47054 * 211.87700 * 10 8 6 13 13 H 1.48505 * 109.47151 * 331.87815 * 10 8 6 14 14 C 1.34775 * 119.99741 * 85.13988 * 5 4 3 15 15 O 1.21715 * 120.00269 * 4.48677 * 14 5 4 16 16 C 1.46805 * 119.99822 * 184.49155 * 14 5 4 17 17 C 1.35965 * 125.14704 * 173.73133 * 16 14 5 18 18 C 1.46202 * 106.07029 * 179.97438 * 17 16 14 19 19 C 1.39730 * 134.17495 * 179.97438 * 18 17 16 20 20 C 1.36627 * 119.71065 * 180.02562 * 19 18 17 21 21 C 1.50698 * 119.77940 * 179.97438 * 20 19 18 22 22 C 1.38840 * 120.43673 * 359.69331 * 20 19 18 23 23 C 1.50697 * 119.62492 * 180.31674 * 22 20 19 24 24 C 1.37819 * 120.74869 * 0.60578 * 22 20 19 25 25 C 1.39007 * 119.85783 * 359.41069 * 24 22 20 26 26 O 1.34737 * 133.22511 * 180.25566 * 25 24 22 27 27 H 1.09003 * 109.47468 * 60.00049 * 1 2 3 28 28 H 1.09006 * 109.47260 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47079 * 300.00051 * 1 2 3 30 30 H 1.08995 * 109.47464 * 60.00486 * 3 2 1 31 31 H 1.09000 * 109.47363 * 300.00044 * 3 2 1 32 32 H 1.08996 * 109.47138 * 305.58386 * 4 3 2 33 33 H 1.09003 * 109.47074 * 185.58703 * 4 3 2 34 34 H 0.97003 * 119.99879 * 180.02562 * 9 8 6 35 35 H 1.07998 * 126.96055 * 359.95526 * 17 16 14 36 36 H 1.08001 * 120.14523 * 0.02562 * 19 18 17 37 37 H 1.09003 * 109.47016 * 90.00300 * 21 20 19 38 38 H 1.08999 * 109.46944 * 209.99949 * 21 20 19 39 39 H 1.08993 * 109.46992 * 329.99868 * 21 20 19 40 40 H 1.09003 * 109.46874 * 270.28609 * 23 22 20 41 41 H 1.08994 * 109.47239 * 30.28091 * 23 22 20 42 42 H 1.08997 * 109.47086 * 150.28875 * 23 22 20 43 43 H 1.07999 * 120.06942 * 179.68664 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9766 0.5772 -1.2586 6 6 4.1934 -0.7716 -1.3277 7 1 3.8938 -1.3224 -2.2071 8 6 4.7998 -1.4338 -0.2656 9 7 4.7080 -2.7404 -0.1679 10 14 5.7447 -0.4649 1.0219 11 1 4.8345 -0.1085 2.1398 12 1 6.8648 -1.2912 1.5398 13 1 6.2861 0.7750 0.4098 14 6 4.1690 1.3474 -2.3478 15 8 4.0556 2.5564 -2.2660 16 6 4.5151 0.7279 -3.6330 17 6 4.6134 1.3868 -4.8182 18 6 4.9769 0.3788 -5.8128 19 6 5.2222 0.4118 -7.1880 20 6 5.5495 -0.7404 -7.8453 21 6 5.8138 -0.7066 -9.3285 22 6 5.6459 -1.9410 -7.1547 23 6 6.0152 -3.1996 -7.8968 24 6 5.4020 -1.9959 -5.7994 25 6 5.0671 -0.8368 -5.1090 26 8 4.7844 -0.5817 -3.8166 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6886 1.8463 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.8507 0.5597 0.8348 33 1 3.9784 2.1755 0.0994 34 1 5.1306 -3.2023 0.5731 35 1 4.4548 2.4412 -4.9901 36 1 5.1533 1.3440 -7.7289 37 1 6.8730 -0.5192 -9.5047 38 1 5.5361 -1.6642 -9.7689 39 1 5.2234 0.0879 -9.7847 40 1 5.1101 -3.6848 -8.2620 41 1 6.6584 -2.9486 -8.7402 42 1 6.5440 -3.8755 -7.2249 43 1 5.4752 -2.9367 -5.2741 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457199239.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:08 Heat of formation + Delta-G solvation = -56.384789 kcal Electronic energy + Delta-G solvation = -26864.024071 eV Core-core repulsion = 23068.826228 eV Total energy + Delta-G solvation = -3795.197843 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.36247 -40.79424 -39.48771 -38.65045 -36.92877 -34.26088 -34.06223 -33.16090 -32.08550 -31.13677 -28.02271 -27.80424 -27.29953 -26.63657 -24.69586 -23.34521 -22.56157 -22.25151 -20.91784 -19.72506 -18.43778 -17.93254 -17.75164 -17.24721 -17.12994 -16.55971 -16.39255 -16.08001 -16.03036 -15.60138 -15.36911 -14.99611 -14.83608 -14.67511 -14.49658 -13.93924 -13.77442 -13.67036 -13.54204 -13.38077 -13.18284 -13.13951 -12.93389 -12.63225 -12.45515 -12.31582 -12.25863 -11.99311 -11.78230 -11.75509 -11.34764 -11.02488 -10.87276 -10.55022 -9.90893 -9.30935 -9.06613 -8.51024 -6.12873 -0.35038 0.39383 0.85689 1.16141 1.29097 1.36814 1.73680 2.13442 2.19463 2.41000 2.67551 2.85619 3.05366 3.53194 3.70910 3.90437 3.98277 4.06089 4.06888 4.17305 4.23864 4.32398 4.33087 4.46432 4.51439 4.54214 4.54987 4.68969 4.72452 4.80481 4.80910 4.86627 4.88868 4.94867 5.12553 5.23543 5.27049 5.30554 5.37147 5.44608 5.62191 5.82953 6.00088 6.20635 6.22734 6.33292 6.86335 7.21574 7.50210 8.62814 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015364 B = 0.004159 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.958974 B = 6730.003925 C = 7274.655430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.059 3.941 4 C 0.085 3.915 5 N -0.440 5.440 6 C -0.324 4.324 7 H 0.086 0.914 8 C 0.034 3.966 9 N -0.889 5.889 10 Si 0.926 3.074 11 H -0.246 1.246 12 H -0.281 1.281 13 H -0.267 1.267 14 C 0.531 3.469 15 O -0.594 6.594 16 C -0.012 4.012 17 C -0.147 4.147 18 C -0.156 4.156 19 C -0.068 4.068 20 C -0.107 4.107 21 C -0.106 4.106 22 C -0.051 4.051 23 C -0.111 4.111 24 C -0.131 4.131 25 C 0.020 3.980 26 O -0.173 6.173 27 H 0.040 0.960 28 H 0.087 0.913 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.044 0.956 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.280 0.720 35 H 0.178 0.822 36 H 0.154 0.846 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.070 0.930 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.593 2.804 -12.244 12.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.018 4.018 4 C -0.036 4.036 5 N -0.157 5.157 6 C -0.452 4.452 7 H 0.103 0.897 8 C -0.171 4.171 9 N -0.526 5.526 10 Si 0.751 3.249 11 H -0.172 1.172 12 H -0.207 1.207 13 H -0.192 1.192 14 C 0.322 3.678 15 O -0.482 6.482 16 C -0.062 4.062 17 C -0.168 4.168 18 C -0.157 4.157 19 C -0.085 4.085 20 C -0.107 4.107 21 C -0.162 4.162 22 C -0.052 4.052 23 C -0.168 4.168 24 C -0.150 4.150 25 C -0.029 4.029 26 O -0.073 6.073 27 H 0.059 0.941 28 H 0.105 0.895 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.119 0.881 34 H 0.090 0.910 35 H 0.195 0.805 36 H 0.171 0.829 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.115 0.885 42 H 0.089 0.911 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.521 2.801 -11.814 12.153 hybrid contribution 0.065 0.280 1.238 1.271 sum -0.455 3.081 -10.576 11.025 Atomic orbital electron populations 1.22878 0.80246 1.03215 1.00589 1.88129 1.20867 1.27703 1.95406 1.22817 0.92584 0.85160 1.01223 1.22111 0.94869 0.99550 0.87118 1.43671 1.55575 1.07566 1.08896 1.18989 1.39603 0.80899 1.05670 0.89678 1.25880 0.96087 0.95982 0.99140 1.69757 1.41366 1.09214 1.32220 0.86197 0.79227 0.79353 0.80173 1.17158 1.20725 1.19158 1.17210 0.81959 0.85472 0.83165 1.90673 1.59539 1.12905 1.85115 1.22073 1.06034 0.81786 0.96301 1.22766 1.04192 1.00431 0.89390 1.20100 1.07496 0.92000 0.96057 1.20500 0.98044 0.99975 0.90029 1.19805 1.01040 0.91474 0.98414 1.20847 1.03074 1.04296 0.87960 1.19980 0.96769 0.97339 0.91071 1.20931 1.02874 0.92558 1.00397 1.20092 1.05571 0.94948 0.94354 1.20597 1.01950 0.97463 0.82867 1.84680 1.71047 1.25780 1.25822 0.94141 0.89495 0.92092 0.89373 0.93783 0.90506 0.88114 0.90989 0.80508 0.82872 0.89847 0.89612 0.90329 0.89403 0.88534 0.91141 0.85402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 11.01 113.37 1.25 2.08 16 2 O -0.40 -17.12 10.43 -148.98 -1.55 -18.68 16 3 C 0.06 2.29 6.25 71.98 0.45 2.74 16 4 C 0.09 3.78 4.36 86.38 0.38 4.16 16 5 N -0.44 -22.70 2.13 -639.93 -1.36 -24.06 16 6 C -0.32 -18.43 8.29 84.12 0.70 -17.74 16 7 H 0.09 5.39 5.93 -2.91 -0.02 5.38 16 8 C 0.03 1.89 5.35 84.97 0.45 2.35 16 9 N -0.89 -51.80 13.95 21.68 0.30 -51.49 16 10 Si 0.93 43.09 24.92 68.60 1.71 44.80 16 11 H -0.25 -10.42 6.59 99.48 0.66 -9.76 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 13 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 14 C 0.53 27.16 7.57 86.48 0.65 27.82 16 15 O -0.59 -30.21 16.47 -4.40 -0.07 -30.28 16 16 C -0.01 -0.57 6.78 23.98 0.16 -0.41 16 17 C -0.15 -5.99 10.81 23.81 0.26 -5.73 16 18 C -0.16 -5.83 6.38 -20.24 -0.13 -5.96 16 19 C -0.07 -1.89 9.68 22.25 0.22 -1.67 16 20 C -0.11 -2.55 5.85 -20.10 -0.12 -2.66 16 21 C -0.11 -1.47 9.15 71.24 0.65 -0.82 16 22 C -0.05 -1.34 5.88 -19.82 -0.12 -1.46 16 23 C -0.11 -1.91 9.15 71.24 0.65 -1.26 16 24 C -0.13 -4.61 9.70 22.35 0.22 -4.39 16 25 C 0.02 0.84 7.41 23.07 0.17 1.01 16 26 O -0.17 -8.75 7.32 -13.26 -0.10 -8.85 16 27 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.09 2.54 8.14 -2.38 -0.02 2.52 16 29 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 31 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.08 3.47 3.33 -2.39 -0.01 3.46 16 33 H 0.10 4.13 7.51 -2.39 -0.02 4.11 16 34 H 0.28 15.08 8.31 -92.71 -0.77 14.31 16 35 H 0.18 6.30 8.06 -2.91 -0.02 6.28 16 36 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 37 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.09 0.93 6.69 -2.39 -0.02 0.91 16 39 H 0.08 0.92 8.08 -2.39 -0.02 0.90 16 40 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.10 1.17 6.68 -2.39 -0.02 1.16 16 42 H 0.07 1.22 8.08 -2.39 -0.02 1.20 16 43 H 0.13 4.42 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -72.87 355.41 5.75 -67.12 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.98 Total: 23.40 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: 5.84 Total: -1.96 kcal Atomic # 7 Polarization: -74.49 SS G_CDS: -1.06 Total: -75.55 kcal Atomic # 8 Polarization: -56.09 SS G_CDS: -1.72 Total: -57.81 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.71 Total: 44.80 kcal Total: -72.87 5.75 -67.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457199239.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.735 kcal (2) G-P(sol) polarization free energy of solvation -72.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds