Wall clock time and date at job start Tue Mar 31 2020 11:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 114.00147 * 2 1 4 4 C 1.52998 * 109.47138 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46959 * 65.00613 * 4 3 2 6 6 C 1.36952 * 119.99988 * 273.35225 * 5 4 3 7 7 H 1.07999 * 120.00082 * 125.19297 * 6 5 4 8 8 C 1.38975 * 119.99847 * 305.19864 * 6 5 4 9 9 N 1.31417 * 120.00344 * 2.88403 * 8 6 5 10 10 Si 1.86807 * 120.00087 * 182.88884 * 8 6 5 11 11 H 1.48500 * 109.46906 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.46919 * 119.99308 * 10 8 6 13 13 H 1.48491 * 109.47123 * 239.99867 * 10 8 6 14 14 C 1.34781 * 119.99972 * 93.34969 * 5 4 3 15 15 O 1.21677 * 120.00313 * 2.84504 * 14 5 4 16 16 C 1.46988 * 119.99746 * 182.84361 * 14 5 4 17 17 C 1.36150 * 127.14591 * 353.42758 * 16 14 5 18 18 O 1.33827 * 109.82967 * 180.02562 * 17 16 14 19 19 C 1.34912 * 111.35228 * 359.97438 * 18 17 16 20 20 C 1.38970 * 133.09124 * 179.97438 * 19 18 17 21 21 C 1.37852 * 119.97179 * 179.97438 * 20 19 18 22 22 C 1.50697 * 119.67085 * 179.97438 * 21 20 19 23 23 C 1.38677 * 120.65001 * 0.02562 * 21 20 19 24 24 C 1.50705 * 119.89464 * 179.97438 * 23 21 20 25 25 C 1.37844 * 120.20673 * 0.24993 * 23 21 20 26 26 C 1.39110 * 119.62438 * 359.50145 * 25 23 21 27 27 H 1.09001 * 109.46892 * 59.99556 * 1 2 3 28 28 H 1.09003 * 109.46819 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46767 * 299.99600 * 1 2 3 30 30 H 1.09006 * 109.46768 * 60.00176 * 3 2 1 31 31 H 1.09002 * 109.47486 * 300.00651 * 3 2 1 32 32 H 1.08993 * 109.47273 * 305.00608 * 4 3 2 33 33 H 1.08997 * 109.47232 * 184.99945 * 4 3 2 34 34 H 0.96990 * 120.00214 * 180.02562 * 9 8 6 35 35 H 1.08005 * 125.08381 * 359.96221 * 17 16 14 36 36 H 1.07997 * 120.01349 * 0.02600 * 20 19 18 37 37 H 1.09004 * 109.46590 * 270.02327 * 22 21 20 38 38 H 1.08999 * 109.47755 * 30.02115 * 22 21 20 39 39 H 1.09001 * 109.47121 * 150.02935 * 22 21 20 40 40 H 1.08995 * 109.46928 * 90.00028 * 24 23 21 41 41 H 1.08993 * 109.47024 * 329.99720 * 24 23 21 42 42 H 1.09005 * 109.47027 * 209.99617 * 24 23 21 43 43 H 1.07997 * 120.19109 * 179.75148 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5640 -1.2510 6 6 4.0320 -0.8003 -1.3565 7 1 3.5064 -1.3019 -2.1556 8 6 4.7645 -1.5394 -0.4353 9 7 5.3573 -0.9348 0.5697 10 14 4.9065 -3.3923 -0.6257 11 1 4.1530 -3.8254 -1.8298 12 1 6.3358 -3.7664 -0.7745 13 1 4.3431 -4.0580 0.5762 14 6 4.3281 1.3358 -2.2986 15 8 4.3286 2.5475 -2.1885 16 6 4.7108 0.7135 -3.5741 17 6 4.8807 -0.6142 -3.8228 18 8 5.2300 -0.7954 -5.1019 19 6 5.3093 0.3793 -5.7606 20 6 5.6266 0.7130 -7.0718 21 6 5.6243 2.0339 -7.4661 22 6 5.9700 2.3881 -8.8895 23 6 5.3080 3.0399 -6.5656 24 6 5.3112 4.4785 -7.0148 25 6 4.9961 2.7287 -5.2594 26 6 4.9903 1.3986 -4.8521 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6887 1.8463 0.8901 31 1 1.6886 1.8464 -0.8899 32 1 3.8508 0.5684 0.8426 33 1 3.9785 2.1764 0.0902 34 1 5.8688 -1.4506 1.2124 35 1 4.7537 -1.4032 -3.0962 36 1 5.8741 -0.0623 -7.7818 37 1 7.0444 2.5526 -8.9722 38 1 5.6756 1.5717 -9.5489 39 1 5.4402 3.2964 -9.1768 40 1 4.3210 4.7463 -7.3830 41 1 6.0428 4.6084 -7.8122 42 1 5.5723 5.1211 -6.1739 43 1 4.7537 3.5127 -4.5573 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457203801.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:44 Heat of formation + Delta-G solvation = -46.346705 kcal Electronic energy + Delta-G solvation = -26966.260616 eV Core-core repulsion = 23171.498057 eV Total energy + Delta-G solvation = -3794.762559 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.87369 -38.53611 -38.24312 -36.91130 -34.74649 -32.81793 -31.88809 -31.73005 -30.87104 -28.87245 -26.80109 -26.17433 -25.68403 -25.04793 -22.95283 -22.13552 -20.96079 -20.41264 -19.13619 -17.75306 -16.72340 -15.93062 -15.68328 -15.67677 -15.41961 -15.02140 -14.77657 -14.41455 -14.29303 -13.95717 -13.92537 -13.72642 -13.49035 -13.20856 -12.75990 -12.60249 -12.20540 -12.10081 -11.97714 -11.88602 -11.65262 -11.30092 -11.23481 -11.10348 -11.06595 -10.98658 -10.76542 -10.44700 -10.39800 -10.14242 -9.35706 -9.08630 -8.99235 -8.63263 -7.98984 -7.57065 -7.36359 -6.42587 -4.34993 1.35481 1.69248 2.58547 3.07910 3.15855 3.17234 3.34886 3.92651 3.99435 4.48223 4.53017 4.67901 4.90483 4.98391 5.01600 5.19845 5.33060 5.42637 5.57754 5.60273 5.65827 5.71239 5.73502 5.73830 5.86066 5.90249 5.96922 6.01554 6.06354 6.07080 6.19897 6.28920 6.30510 6.43508 6.59867 6.72358 6.82745 6.91636 7.05077 7.12233 7.19079 7.37701 7.72122 7.85017 8.04906 8.23715 8.95046 9.44284 9.87606 10.57243 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014469 B = 0.004463 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.725427 B = 6272.669215 C = 7350.022805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.361 6.361 3 C 0.054 3.946 4 C 0.115 3.885 5 N -0.429 5.429 6 C -0.339 4.339 7 H 0.090 0.910 8 C 0.058 3.942 9 N -0.854 5.854 10 Si 0.906 3.094 11 H -0.262 1.262 12 H -0.276 1.276 13 H -0.275 1.275 14 C 0.551 3.449 15 O -0.603 6.603 16 C -0.206 4.206 17 C 0.054 3.946 18 O -0.201 6.201 19 C 0.035 3.965 20 C -0.110 4.110 21 C -0.076 4.076 22 C -0.108 4.108 23 C -0.113 4.113 24 C -0.107 4.107 25 C -0.058 4.058 26 C -0.089 4.089 27 H 0.030 0.970 28 H 0.077 0.923 29 H 0.029 0.971 30 H 0.039 0.961 31 H 0.037 0.963 32 H 0.112 0.888 33 H 0.073 0.927 34 H 0.272 0.728 35 H 0.249 0.751 36 H 0.125 0.875 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.216 2.481 -9.924 10.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C -0.024 4.024 4 C -0.008 4.008 5 N -0.146 5.146 6 C -0.466 4.466 7 H 0.107 0.893 8 C -0.151 4.151 9 N -0.488 5.488 10 Si 0.731 3.269 11 H -0.186 1.186 12 H -0.202 1.202 13 H -0.201 1.201 14 C 0.342 3.658 15 O -0.490 6.490 16 C -0.210 4.210 17 C -0.012 4.012 18 O -0.102 6.102 19 C -0.011 4.011 20 C -0.128 4.128 21 C -0.076 4.076 22 C -0.164 4.164 23 C -0.113 4.113 24 C -0.164 4.164 25 C -0.076 4.076 26 C -0.091 4.091 27 H 0.049 0.951 28 H 0.096 0.904 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.130 0.870 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.264 0.736 36 H 0.143 0.857 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.936 2.625 -9.777 10.307 hybrid contribution -0.292 -0.740 0.413 0.896 sum -2.228 1.885 -9.364 9.808 Atomic orbital electron populations 1.22645 0.83582 1.01711 0.98754 1.88161 1.17184 1.27556 1.94995 1.23031 0.96570 0.84390 0.98410 1.21518 0.89144 0.99139 0.91035 1.42963 1.56248 1.05685 1.09751 1.19284 1.30583 0.81134 1.15617 0.89329 1.25632 0.94215 1.00030 0.95204 1.69730 1.30146 1.36652 1.12313 0.86204 0.78500 0.82834 0.79347 1.18633 1.20156 1.20065 1.17443 0.78981 0.85916 0.83475 1.90596 1.59402 1.14277 1.84700 1.20981 1.12817 0.92817 0.94383 1.27004 0.93186 1.00081 0.80889 1.83952 1.72127 1.31204 1.22912 1.19613 1.03562 0.83764 0.94190 1.19594 1.05580 0.96028 0.91600 1.19325 1.00776 0.91551 0.95946 1.20749 1.01611 1.02024 0.92045 1.19562 1.03060 0.95504 0.93211 1.20722 1.01836 0.92260 1.01543 1.20519 0.97254 0.94909 0.94877 1.19613 1.02848 0.94057 0.92579 0.95095 0.90428 0.95219 0.94285 0.94480 0.87043 0.90891 0.91712 0.73592 0.85658 0.91323 0.91735 0.91292 0.91598 0.91652 0.91616 0.84842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.36 -7.55 10.02 -35.23 -0.35 -7.91 16 3 C 0.05 1.10 6.28 37.16 0.23 1.34 16 4 C 0.12 2.71 5.54 -4.04 -0.02 2.69 16 5 N -0.43 -10.72 2.43 -116.18 -0.28 -11.00 16 6 C -0.34 -8.20 5.65 -14.99 -0.08 -8.29 16 7 H 0.09 2.08 5.93 -52.49 -0.31 1.76 16 8 C 0.06 1.39 5.36 -17.46 -0.09 1.29 16 9 N -0.85 -21.79 11.40 55.50 0.63 -21.15 16 10 Si 0.91 18.43 29.21 -169.99 -4.96 13.46 16 11 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 12 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 13 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 14 C 0.55 14.11 7.62 -12.71 -0.10 14.01 16 15 O -0.60 -16.33 15.83 5.21 0.08 -16.25 16 16 C -0.21 -4.79 6.21 -103.25 -0.64 -5.43 16 17 C 0.05 1.15 10.36 29.98 0.31 1.46 16 18 O -0.20 -3.99 10.53 5.27 0.06 -3.93 16 19 C 0.04 0.68 7.39 -38.56 -0.28 0.40 16 20 C -0.11 -1.73 9.69 -39.45 -0.38 -2.11 16 21 C -0.08 -1.08 5.88 -104.60 -0.61 -1.70 16 22 C -0.11 -1.08 9.17 36.00 0.33 -0.75 16 23 C -0.11 -1.75 5.88 -104.60 -0.62 -2.37 16 24 C -0.11 -1.25 9.18 36.01 0.33 -0.92 16 25 C -0.06 -1.10 9.53 -39.40 -0.38 -1.48 16 26 C -0.09 -1.90 6.29 -104.98 -0.66 -2.56 16 27 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.11 2.79 5.93 -51.93 -0.31 2.48 16 33 H 0.07 1.73 7.29 -51.93 -0.38 1.35 16 34 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 35 H 0.25 5.08 4.27 -52.48 -0.22 4.85 16 36 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.56 8.08 -51.93 -0.42 0.15 16 39 H 0.07 0.60 6.67 -51.93 -0.35 0.26 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.63 6.67 -51.93 -0.35 0.28 16 42 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 43 H 0.13 2.65 7.56 -52.49 -0.40 2.26 16 LS Contribution 355.62 15.07 5.36 5.36 Total: -1.00 -29.79 355.62 -6.69 -36.49 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -5.67 Total: 7.76 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -1.56 Total: -2.82 kcal Atomic # 7 Polarization: -32.51 SS G_CDS: 0.35 Total: -32.15 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.21 Total: -28.09 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -4.96 Total: 13.46 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.79 -6.69 -36.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457203801.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.860 kcal (2) G-P(sol) polarization free energy of solvation -29.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds