Wall clock time and date at job start Tue Mar 31 2020 11:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 114.00147 * 2 1 4 4 C 1.52998 * 109.47138 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46959 * 65.00613 * 4 3 2 6 6 C 1.36952 * 119.99988 * 273.35225 * 5 4 3 7 7 H 1.07999 * 120.00082 * 125.19297 * 6 5 4 8 8 C 1.38975 * 119.99847 * 305.19864 * 6 5 4 9 9 N 1.31417 * 120.00344 * 2.88403 * 8 6 5 10 10 Si 1.86807 * 120.00087 * 182.88884 * 8 6 5 11 11 H 1.48500 * 109.46906 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.46919 * 119.99308 * 10 8 6 13 13 H 1.48491 * 109.47123 * 239.99867 * 10 8 6 14 14 C 1.34781 * 119.99972 * 93.34969 * 5 4 3 15 15 O 1.21677 * 120.00313 * 2.84504 * 14 5 4 16 16 C 1.46988 * 119.99746 * 182.84361 * 14 5 4 17 17 C 1.36150 * 127.14591 * 353.42758 * 16 14 5 18 18 O 1.33827 * 109.82967 * 180.02562 * 17 16 14 19 19 C 1.34912 * 111.35228 * 359.97438 * 18 17 16 20 20 C 1.38970 * 133.09124 * 179.97438 * 19 18 17 21 21 C 1.37852 * 119.97179 * 179.97438 * 20 19 18 22 22 C 1.50697 * 119.67085 * 179.97438 * 21 20 19 23 23 C 1.38677 * 120.65001 * 0.02562 * 21 20 19 24 24 C 1.50705 * 119.89464 * 179.97438 * 23 21 20 25 25 C 1.37844 * 120.20673 * 0.24993 * 23 21 20 26 26 C 1.39110 * 119.62438 * 359.50145 * 25 23 21 27 27 H 1.09001 * 109.46892 * 59.99556 * 1 2 3 28 28 H 1.09003 * 109.46819 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46767 * 299.99600 * 1 2 3 30 30 H 1.09006 * 109.46768 * 60.00176 * 3 2 1 31 31 H 1.09002 * 109.47486 * 300.00651 * 3 2 1 32 32 H 1.08993 * 109.47273 * 305.00608 * 4 3 2 33 33 H 1.08997 * 109.47232 * 184.99945 * 4 3 2 34 34 H 0.96990 * 120.00214 * 180.02562 * 9 8 6 35 35 H 1.08005 * 125.08381 * 359.96221 * 17 16 14 36 36 H 1.07997 * 120.01349 * 0.02600 * 20 19 18 37 37 H 1.09004 * 109.46590 * 270.02327 * 22 21 20 38 38 H 1.08999 * 109.47755 * 30.02115 * 22 21 20 39 39 H 1.09001 * 109.47121 * 150.02935 * 22 21 20 40 40 H 1.08995 * 109.46928 * 90.00028 * 24 23 21 41 41 H 1.08993 * 109.47024 * 329.99720 * 24 23 21 42 42 H 1.09005 * 109.47027 * 209.99617 * 24 23 21 43 43 H 1.07997 * 120.19109 * 179.75148 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5640 -1.2510 6 6 4.0320 -0.8003 -1.3565 7 1 3.5064 -1.3019 -2.1556 8 6 4.7645 -1.5394 -0.4353 9 7 5.3573 -0.9348 0.5697 10 14 4.9065 -3.3923 -0.6257 11 1 4.1530 -3.8254 -1.8298 12 1 6.3358 -3.7664 -0.7745 13 1 4.3431 -4.0580 0.5762 14 6 4.3281 1.3358 -2.2986 15 8 4.3286 2.5475 -2.1885 16 6 4.7108 0.7135 -3.5741 17 6 4.8807 -0.6142 -3.8228 18 8 5.2300 -0.7954 -5.1019 19 6 5.3093 0.3793 -5.7606 20 6 5.6266 0.7130 -7.0718 21 6 5.6243 2.0339 -7.4661 22 6 5.9700 2.3881 -8.8895 23 6 5.3080 3.0399 -6.5656 24 6 5.3112 4.4785 -7.0148 25 6 4.9961 2.7287 -5.2594 26 6 4.9903 1.3986 -4.8521 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6887 1.8463 0.8901 31 1 1.6886 1.8464 -0.8899 32 1 3.8508 0.5684 0.8426 33 1 3.9785 2.1764 0.0902 34 1 5.8688 -1.4506 1.2124 35 1 4.7537 -1.4032 -3.0962 36 1 5.8741 -0.0623 -7.7818 37 1 7.0444 2.5526 -8.9722 38 1 5.6756 1.5717 -9.5489 39 1 5.4402 3.2964 -9.1768 40 1 4.3210 4.7463 -7.3830 41 1 6.0428 4.6084 -7.8122 42 1 5.5723 5.1211 -6.1739 43 1 4.7537 3.5127 -4.5573 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457203801.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:44 Heat of formation + Delta-G solvation = -63.517794 kcal Electronic energy + Delta-G solvation = -26967.005210 eV Core-core repulsion = 23171.498057 eV Total energy + Delta-G solvation = -3795.507153 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.39881 -40.40084 -39.53909 -38.53355 -36.65194 -34.24629 -33.62553 -33.12103 -32.31674 -30.47945 -27.98113 -27.60247 -27.02951 -26.79168 -24.67482 -23.40908 -22.68692 -21.79776 -20.96854 -19.42568 -18.29804 -17.50502 -17.33913 -17.21160 -17.04185 -16.57619 -16.34431 -15.96703 -15.90145 -15.55151 -15.12912 -15.01037 -14.89169 -14.82988 -14.33882 -13.60036 -13.55149 -13.52869 -13.39029 -13.15890 -13.04729 -12.92963 -12.77859 -12.59139 -12.44498 -12.33382 -12.25773 -12.00849 -11.84548 -11.80881 -10.97142 -10.87213 -10.62432 -10.48486 -9.40299 -9.28398 -9.00000 -8.28753 -6.27464 -0.07626 0.33727 0.93213 1.46427 1.48366 1.59285 1.83520 2.25421 2.46083 2.78963 2.84420 2.98506 3.12992 3.60374 3.87154 3.92657 4.03827 4.22591 4.23371 4.31637 4.34112 4.49044 4.50369 4.52212 4.59493 4.62284 4.74108 4.78324 4.83918 4.84652 4.89311 4.93185 4.96708 5.16625 5.25343 5.28390 5.28800 5.41285 5.44748 5.50652 5.62647 5.82126 6.08408 6.21016 6.34362 6.41044 7.05149 7.51193 7.95809 8.72606 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014469 B = 0.004463 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.725427 B = 6272.669215 C = 7350.022805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.391 6.391 3 C 0.066 3.934 4 C 0.113 3.887 5 N -0.434 5.434 6 C -0.346 4.346 7 H 0.096 0.904 8 C 0.019 3.981 9 N -0.889 5.889 10 Si 0.970 3.030 11 H -0.244 1.244 12 H -0.275 1.275 13 H -0.277 1.277 14 C 0.535 3.465 15 O -0.635 6.635 16 C -0.244 4.244 17 C 0.067 3.933 18 O -0.196 6.196 19 C 0.018 3.982 20 C -0.105 4.105 21 C -0.065 4.065 22 C -0.106 4.106 23 C -0.101 4.101 24 C -0.107 4.107 25 C -0.090 4.090 26 C -0.124 4.124 27 H 0.036 0.964 28 H 0.095 0.905 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.026 0.974 32 H 0.096 0.904 33 H 0.058 0.942 34 H 0.274 0.726 35 H 0.253 0.747 36 H 0.160 0.840 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.060 0.940 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.306 1.660 -13.118 13.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.310 6.310 3 C -0.011 4.011 4 C -0.010 4.010 5 N -0.151 5.151 6 C -0.473 4.473 7 H 0.113 0.887 8 C -0.186 4.186 9 N -0.524 5.524 10 Si 0.792 3.208 11 H -0.167 1.167 12 H -0.200 1.200 13 H -0.203 1.203 14 C 0.327 3.673 15 O -0.524 6.524 16 C -0.248 4.248 17 C 0.000 4.000 18 O -0.097 6.097 19 C -0.028 4.028 20 C -0.123 4.123 21 C -0.065 4.065 22 C -0.162 4.162 23 C -0.102 4.102 24 C -0.163 4.163 25 C -0.108 4.108 26 C -0.125 4.125 27 H 0.054 0.946 28 H 0.114 0.886 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.044 0.956 32 H 0.114 0.886 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.267 0.733 36 H 0.178 0.822 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.115 0.885 42 H 0.079 0.921 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.046 1.800 -12.984 13.267 hybrid contribution -0.275 -0.379 1.313 1.394 sum -2.322 1.421 -11.671 11.984 Atomic orbital electron populations 1.22887 0.80803 1.03385 1.00078 1.88089 1.20248 1.27440 1.95254 1.22787 0.94354 0.84791 0.99199 1.21474 0.91541 0.97814 0.90219 1.43185 1.55847 1.06235 1.09857 1.19522 1.30950 0.80847 1.15975 0.88724 1.26416 0.93472 1.04273 0.94481 1.69854 1.30981 1.38409 1.13177 0.85231 0.78546 0.77269 0.79764 1.16666 1.20000 1.20264 1.17922 0.78965 0.85831 0.84601 1.90538 1.61000 1.15464 1.85432 1.21033 1.15005 0.94269 0.94471 1.26819 0.92393 0.99202 0.81584 1.83912 1.72026 1.31571 1.22171 1.20054 1.04798 0.82699 0.95294 1.20140 1.04081 0.97720 0.90402 1.19935 0.98117 0.90476 0.98020 1.20890 1.03015 1.03663 0.88667 1.20045 1.00313 0.98133 0.91669 1.20841 1.03773 0.89389 1.02337 1.20545 0.99993 0.93722 0.96567 1.19827 1.04803 0.95564 0.92318 0.94563 0.88643 0.93002 0.91359 0.95590 0.88610 0.92366 0.91595 0.73264 0.82225 0.89444 0.89771 0.89467 0.89897 0.88550 0.92105 0.87220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.75 11.01 113.37 1.25 2.00 16 2 O -0.39 -16.49 10.02 -148.98 -1.49 -17.98 16 3 C 0.07 2.80 6.28 71.98 0.45 3.25 16 4 C 0.11 5.62 5.54 86.38 0.48 6.10 16 5 N -0.43 -22.88 2.43 -639.71 -1.55 -24.44 16 6 C -0.35 -17.27 5.65 84.07 0.48 -16.80 16 7 H 0.10 4.53 5.93 -2.91 -0.02 4.51 16 8 C 0.02 0.91 5.36 84.93 0.46 1.37 16 9 N -0.89 -46.85 11.40 21.67 0.25 -46.60 16 10 Si 0.97 37.78 29.21 68.60 2.00 39.79 16 11 H -0.24 -8.69 7.11 99.48 0.71 -7.98 16 12 H -0.27 -10.59 7.11 99.48 0.71 -9.89 16 13 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 14 C 0.53 29.23 7.62 86.54 0.66 29.89 16 15 O -0.63 -37.07 15.83 -4.28 -0.07 -37.13 16 16 C -0.24 -11.98 6.21 -18.98 -0.12 -12.09 16 17 C 0.07 2.91 10.36 67.33 0.70 3.61 16 18 O -0.20 -7.79 10.53 -4.06 -0.04 -7.83 16 19 C 0.02 0.68 7.39 22.93 0.17 0.85 16 20 C -0.11 -3.03 9.69 22.35 0.22 -2.82 16 21 C -0.07 -1.64 5.88 -19.85 -0.12 -1.76 16 22 C -0.11 -1.54 9.17 71.23 0.65 -0.88 16 23 C -0.10 -2.98 5.88 -19.85 -0.12 -3.10 16 24 C -0.11 -2.21 9.18 71.24 0.65 -1.56 16 25 C -0.09 -3.58 9.53 22.39 0.21 -3.36 16 26 C -0.12 -5.47 6.29 -20.09 -0.13 -5.60 16 27 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 31 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.10 5.06 5.93 -2.39 -0.01 5.05 16 33 H 0.06 2.98 7.29 -2.39 -0.02 2.96 16 34 H 0.27 13.58 8.31 -92.72 -0.77 12.81 16 35 H 0.25 10.50 4.27 -2.91 -0.01 10.49 16 36 H 0.16 3.46 8.06 -2.91 -0.02 3.43 16 37 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.08 0.97 8.08 -2.39 -0.02 0.95 16 39 H 0.09 1.01 6.67 -2.39 -0.02 0.99 16 40 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.10 1.41 6.67 -2.39 -0.02 1.40 16 42 H 0.06 1.33 8.08 -2.38 -0.02 1.31 16 43 H 0.11 4.75 7.56 -2.91 -0.02 4.73 16 Total: -1.00 -69.60 355.62 6.03 -63.57 By element: Atomic # 1 Polarization: 30.50 SS G_CDS: 1.04 Total: 31.53 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: 5.90 Total: -0.92 kcal Atomic # 7 Polarization: -69.73 SS G_CDS: -1.31 Total: -71.03 kcal Atomic # 8 Polarization: -61.34 SS G_CDS: -1.60 Total: -62.94 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 2.00 Total: 39.79 kcal Total: -69.60 6.03 -63.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457203801.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.053 kcal (2) G-P(sol) polarization free energy of solvation -69.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds