Wall clock time and date at job start Tue Mar 31 2020 11:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35685 * 117.00179 * 2 1 4 4 C 1.38608 * 120.15854 * 0.02562 * 3 2 1 5 5 C 1.38130 * 120.11016 * 179.69862 * 4 3 2 6 6 C 1.38574 * 120.43574 * 0.27853 * 5 4 3 7 7 C 1.50692 * 119.84143 * 179.97438 * 6 5 4 8 8 C 1.37761 * 120.31742 * 0.02562 * 6 5 4 9 9 C 1.39927 * 119.88213 * 359.97438 * 8 6 5 10 10 C 1.46942 * 120.21242 * 180.02562 * 9 8 6 11 11 C 1.34994 * 119.99894 * 0.02562 * 10 9 8 12 12 C 1.46247 * 119.99630 * 179.97438 * 11 10 9 13 13 O 1.21719 * 120.00366 * 0.02562 * 12 11 10 14 14 N 1.34784 * 119.99681 * 179.97438 * 12 11 10 15 15 C 1.47063 * 136.05777 * 359.63822 * 14 12 11 16 16 C 1.53754 * 87.88826 * 152.95505 * 15 14 12 17 17 O 1.42896 * 114.39627 * 272.67436 * 16 15 14 18 18 C 1.50705 * 114.26611 * 139.78970 * 16 15 14 19 19 H 1.08001 * 119.99891 * 266.47830 * 18 16 15 20 20 C 1.37872 * 119.99887 * 86.47411 * 18 16 15 21 21 N 1.31516 * 120.00222 * 0.02562 * 20 18 16 22 22 Si 1.86798 * 119.99984 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47028 * 90.00212 * 22 20 18 24 24 H 1.48502 * 109.47669 * 210.00283 * 22 20 18 25 25 H 1.48503 * 109.47257 * 330.00833 * 22 20 18 26 26 C 1.47064 * 136.05582 * 179.97438 * 14 12 11 27 27 H 1.08999 * 109.47288 * 59.99688 * 1 2 3 28 28 H 1.09006 * 109.47503 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47305 * 299.99841 * 1 2 3 30 30 H 1.08002 * 119.94813 * 359.97438 * 4 3 2 31 31 H 1.08003 * 119.78333 * 180.29895 * 5 4 3 32 32 H 1.09000 * 109.47554 * 89.99822 * 7 6 5 33 33 H 1.09006 * 109.47283 * 210.00027 * 7 6 5 34 34 H 1.08999 * 109.47041 * 329.99832 * 7 6 5 35 35 H 1.07992 * 120.05901 * 179.97438 * 8 6 5 36 36 H 1.07996 * 119.99883 * 179.97438 * 10 9 8 37 37 H 1.07996 * 120.00217 * 0.02562 * 11 10 9 38 38 H 1.09000 * 113.46963 * 267.68815 * 15 14 12 39 39 H 1.09001 * 113.46993 * 38.12687 * 15 14 12 40 40 H 0.96700 * 114.00003 * 273.57966 * 17 16 15 41 41 H 0.97002 * 119.99792 * 179.97438 * 21 20 18 42 42 H 1.09000 * 113.47053 * 321.87205 * 26 14 12 43 43 H 1.09003 * 113.46293 * 92.25389 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 1.2933 2.3735 0.0005 5 6 1.9215 3.6037 0.0068 6 6 3.3048 3.6855 0.0068 7 6 3.9761 5.0346 0.0131 8 6 4.0692 2.5395 0.0000 9 6 3.4468 1.2863 -0.0064 10 6 4.2551 0.0592 -0.0131 11 6 5.6027 0.1387 -0.0126 12 6 6.4071 -1.0826 -0.0187 13 8 5.8616 -2.1707 -0.0247 14 7 7.7526 -1.0033 -0.0187 15 6 8.7496 0.0777 -0.0202 16 6 9.7171 -0.8906 0.6800 17 8 9.6113 -0.9032 2.1050 18 6 11.1396 -0.8079 0.1890 19 1 11.4799 -1.4694 -0.5939 20 6 12.0063 0.1124 0.7392 21 7 11.5919 0.9177 1.6929 22 14 13.7696 0.2145 0.1312 23 1 13.8503 1.1815 -0.9930 24 1 14.6496 0.6678 1.2382 25 1 14.2107 -1.1246 -0.3353 26 6 8.8697 -1.9598 -0.0231 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.2147 2.3190 0.0005 31 1 1.3306 4.5077 0.0121 32 1 4.1383 5.3551 1.0423 33 1 4.9347 4.9660 -0.5013 34 1 3.3411 5.7589 -0.4971 35 1 5.1470 2.6082 -0.0004 36 1 3.7710 -0.9062 -0.0176 37 1 6.0867 1.1041 -0.0068 38 1 9.0737 0.3680 -1.0196 39 1 8.4657 0.9310 0.5958 40 1 10.1464 -0.2286 2.5450 41 1 12.2019 1.5648 2.0803 42 1 8.6881 -2.8423 0.5904 43 1 9.2247 -2.2078 -1.0235 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491956338.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:03 Heat of formation + Delta-G solvation = -43.003710 kcal Electronic energy + Delta-G solvation = -25588.453291 eV Core-core repulsion = 21793.835695 eV Total energy + Delta-G solvation = -3794.617595 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.43339 -39.48639 -37.95113 -37.37380 -34.20912 -33.95050 -32.17630 -31.99500 -30.09536 -28.52959 -28.03890 -26.17861 -25.59316 -25.06468 -23.81541 -21.74549 -20.62432 -19.40255 -18.36668 -18.01912 -17.43420 -16.70615 -16.17262 -15.97385 -15.39613 -15.07033 -14.85884 -14.62408 -14.53828 -14.13887 -13.94969 -13.86655 -13.67557 -13.07505 -12.73638 -12.64328 -12.51848 -12.27367 -12.16998 -12.03569 -11.92478 -11.54363 -11.24009 -11.14466 -11.08239 -11.04304 -10.94685 -10.47838 -10.24018 -10.23186 -9.61664 -9.18582 -8.76956 -8.70292 -8.36094 -7.97751 -7.69938 -6.39325 -4.49529 0.59613 1.21950 2.11680 3.03732 3.14758 3.23095 3.26611 3.55962 3.64698 3.98315 4.19078 4.50722 4.55316 4.68497 4.79028 4.84206 4.88273 5.02376 5.08892 5.18263 5.24988 5.35679 5.42854 5.47491 5.52568 5.65336 5.73891 5.90211 5.92046 5.97345 6.05684 6.20631 6.39524 6.40602 6.46299 6.55089 6.55769 6.69816 6.71635 6.83700 7.13753 7.18391 7.63974 7.82319 8.52958 8.58059 8.85142 9.21815 9.51537 10.67283 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017641 B = 0.002848 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.838495 B = 9829.374262 C =11078.695251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.308 6.308 3 C 0.140 3.860 4 C -0.208 4.208 5 C -0.075 4.075 6 C -0.124 4.124 7 C -0.111 4.111 8 C -0.067 4.067 9 C -0.089 4.089 10 C -0.032 4.032 11 C -0.188 4.188 12 C 0.565 3.435 13 O -0.569 6.569 14 N -0.628 5.628 15 C 0.071 3.929 16 C 0.240 3.760 17 O -0.570 6.570 18 C -0.532 4.532 19 H 0.073 0.927 20 C 0.071 3.929 21 N -0.898 5.898 22 Si 0.909 3.091 23 H -0.277 1.277 24 H -0.283 1.283 25 H -0.271 1.271 26 C 0.106 3.894 27 H 0.055 0.945 28 H 0.101 0.899 29 H 0.055 0.945 30 H 0.129 0.871 31 H 0.124 0.876 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.124 0.876 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.393 0.607 41 H 0.274 0.726 42 H 0.066 0.934 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.120 8.365 -3.659 20.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.221 6.221 3 C 0.094 3.906 4 C -0.227 4.227 5 C -0.094 4.094 6 C -0.124 4.124 7 C -0.167 4.167 8 C -0.085 4.085 9 C -0.090 4.090 10 C -0.052 4.052 11 C -0.208 4.208 12 C 0.358 3.642 13 O -0.451 6.451 14 N -0.360 5.360 15 C -0.052 4.052 16 C 0.198 3.802 17 O -0.383 6.383 18 C -0.571 4.571 19 H 0.091 0.909 20 C -0.131 4.131 21 N -0.539 5.539 22 Si 0.736 3.264 23 H -0.203 1.203 24 H -0.209 1.209 25 H -0.195 1.195 26 C -0.016 4.016 27 H 0.074 0.926 28 H 0.120 0.880 29 H 0.074 0.926 30 H 0.147 0.853 31 H 0.142 0.858 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.142 0.858 38 H 0.100 0.900 39 H 0.082 0.918 40 H 0.250 0.750 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -18.863 7.252 -3.645 20.535 hybrid contribution 0.939 0.920 -0.212 1.331 sum -17.924 8.172 -3.856 20.073 Atomic orbital electron populations 1.23092 0.78318 1.04173 1.01241 1.86073 1.21336 1.26643 1.88050 1.19148 0.91407 0.84387 0.95620 1.21127 0.99937 0.92123 1.09521 1.20901 0.93931 0.96929 0.97595 1.19761 0.93524 0.95626 1.03475 1.20743 1.00565 0.93001 1.02429 1.21249 1.00292 0.90255 0.96683 1.18385 0.89677 0.93821 1.07114 1.22058 0.93028 0.96958 0.93139 1.22920 0.94313 0.98187 1.05397 1.17690 0.80373 0.89090 0.77094 1.90746 1.71243 1.29849 1.53288 1.49612 1.02931 1.13551 1.69942 1.24274 0.86698 0.93119 1.01144 1.19579 0.91332 0.88980 0.80308 1.86053 1.72551 1.61503 1.18232 1.21441 0.94847 1.19595 1.21171 0.90920 1.25081 0.99594 0.94181 0.94243 1.69269 1.36701 1.21720 1.26204 0.86308 0.82925 0.78682 0.78465 1.20307 1.20898 1.19521 1.23321 0.82999 0.95246 1.00035 0.92637 0.88047 0.92603 0.85271 0.85759 0.91200 0.91309 0.91725 0.84590 0.84451 0.85784 0.90046 0.91752 0.75008 0.91599 0.91526 0.89683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.80 9.68 -18.76 -0.18 -3.98 16 3 C 0.14 1.77 6.70 -38.63 -0.26 1.51 16 4 C -0.21 -2.10 9.03 -39.48 -0.36 -2.46 16 5 C -0.08 -0.72 9.68 -39.50 -0.38 -1.10 16 6 C -0.12 -1.31 5.87 -104.68 -0.61 -1.92 16 7 C -0.11 -0.91 10.00 36.00 0.36 -0.55 16 8 C -0.07 -0.84 9.05 -39.12 -0.35 -1.19 16 9 C -0.09 -1.26 5.88 -104.93 -0.62 -1.87 16 10 C -0.03 -0.52 9.21 -37.21 -0.34 -0.87 16 11 C -0.19 -3.33 9.25 -37.52 -0.35 -3.68 16 12 C 0.57 12.37 7.99 -13.04 -0.10 12.26 16 13 O -0.57 -13.96 17.01 5.17 0.09 -13.87 16 14 N -0.63 -13.92 3.69 -186.79 -0.69 -14.61 16 15 C 0.07 1.54 7.75 -8.38 -0.06 1.47 16 16 C 0.24 5.83 1.58 -91.13 -0.14 5.69 16 17 O -0.57 -14.96 13.55 -35.23 -0.48 -15.44 16 18 C -0.53 -13.33 8.70 -34.44 -0.30 -13.63 16 19 H 0.07 1.77 7.81 -52.49 -0.41 1.36 16 20 C 0.07 1.77 5.39 -17.82 -0.10 1.67 16 21 N -0.90 -22.65 11.01 55.43 0.61 -22.04 16 22 Si 0.91 19.32 29.54 -169.99 -5.02 14.30 16 23 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 24 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 26 C 0.11 2.40 8.02 -8.52 -0.07 2.33 16 27 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 28 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.34 7.66 -51.93 -0.40 -0.05 16 30 H 0.13 0.96 6.30 -52.49 -0.33 0.63 16 31 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 34 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 35 H 0.14 1.61 6.17 -52.49 -0.32 1.29 16 36 H 0.14 2.41 7.10 -52.49 -0.37 2.04 16 37 H 0.12 1.95 5.98 -52.49 -0.31 1.64 16 38 H 0.08 1.66 8.10 -51.93 -0.42 1.24 16 39 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.39 10.35 6.32 45.56 0.29 10.64 16 41 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 42 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 43 H 0.09 1.74 8.10 -51.93 -0.42 1.32 16 LS Contribution 366.01 15.07 5.52 5.52 Total: -1.00 -30.44 366.01 -8.04 -38.48 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -5.19 Total: 12.78 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -2.70 Total: -1.14 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: -0.08 Total: -36.64 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -0.57 Total: -33.29 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.02 Total: 14.30 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.44 -8.04 -38.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491956338.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.522 kcal (2) G-P(sol) polarization free energy of solvation -30.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds