Wall clock time and date at job start Tue Mar 31 2020 11:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35685 * 117.00179 * 2 1 4 4 C 1.38608 * 120.15854 * 0.02562 * 3 2 1 5 5 C 1.38130 * 120.11016 * 179.69862 * 4 3 2 6 6 C 1.38574 * 120.43574 * 0.27853 * 5 4 3 7 7 C 1.50692 * 119.84143 * 179.97438 * 6 5 4 8 8 C 1.37761 * 120.31742 * 0.02562 * 6 5 4 9 9 C 1.39927 * 119.88213 * 359.97438 * 8 6 5 10 10 C 1.46942 * 120.21242 * 180.02562 * 9 8 6 11 11 C 1.34994 * 119.99894 * 0.02562 * 10 9 8 12 12 C 1.46247 * 119.99630 * 179.97438 * 11 10 9 13 13 O 1.21719 * 120.00366 * 0.02562 * 12 11 10 14 14 N 1.34784 * 119.99681 * 179.97438 * 12 11 10 15 15 C 1.47063 * 136.05777 * 359.63822 * 14 12 11 16 16 C 1.53754 * 87.88826 * 152.95505 * 15 14 12 17 17 O 1.42896 * 114.39627 * 272.67436 * 16 15 14 18 18 C 1.50705 * 114.26611 * 139.78970 * 16 15 14 19 19 H 1.08001 * 119.99891 * 266.47830 * 18 16 15 20 20 C 1.37872 * 119.99887 * 86.47411 * 18 16 15 21 21 N 1.31516 * 120.00222 * 0.02562 * 20 18 16 22 22 Si 1.86798 * 119.99984 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47028 * 90.00212 * 22 20 18 24 24 H 1.48502 * 109.47669 * 210.00283 * 22 20 18 25 25 H 1.48503 * 109.47257 * 330.00833 * 22 20 18 26 26 C 1.47064 * 136.05582 * 179.97438 * 14 12 11 27 27 H 1.08999 * 109.47288 * 59.99688 * 1 2 3 28 28 H 1.09006 * 109.47503 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47305 * 299.99841 * 1 2 3 30 30 H 1.08002 * 119.94813 * 359.97438 * 4 3 2 31 31 H 1.08003 * 119.78333 * 180.29895 * 5 4 3 32 32 H 1.09000 * 109.47554 * 89.99822 * 7 6 5 33 33 H 1.09006 * 109.47283 * 210.00027 * 7 6 5 34 34 H 1.08999 * 109.47041 * 329.99832 * 7 6 5 35 35 H 1.07992 * 120.05901 * 179.97438 * 8 6 5 36 36 H 1.07996 * 119.99883 * 179.97438 * 10 9 8 37 37 H 1.07996 * 120.00217 * 0.02562 * 11 10 9 38 38 H 1.09000 * 113.46963 * 267.68815 * 15 14 12 39 39 H 1.09001 * 113.46993 * 38.12687 * 15 14 12 40 40 H 0.96700 * 114.00003 * 273.57966 * 17 16 15 41 41 H 0.97002 * 119.99792 * 179.97438 * 21 20 18 42 42 H 1.09000 * 113.47053 * 321.87205 * 26 14 12 43 43 H 1.09003 * 113.46293 * 92.25389 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 1.2933 2.3735 0.0005 5 6 1.9215 3.6037 0.0068 6 6 3.3048 3.6855 0.0068 7 6 3.9761 5.0346 0.0131 8 6 4.0692 2.5395 0.0000 9 6 3.4468 1.2863 -0.0064 10 6 4.2551 0.0592 -0.0131 11 6 5.6027 0.1387 -0.0126 12 6 6.4071 -1.0826 -0.0187 13 8 5.8616 -2.1707 -0.0247 14 7 7.7526 -1.0033 -0.0187 15 6 8.7496 0.0777 -0.0202 16 6 9.7171 -0.8906 0.6800 17 8 9.6113 -0.9032 2.1050 18 6 11.1396 -0.8079 0.1890 19 1 11.4799 -1.4694 -0.5939 20 6 12.0063 0.1124 0.7392 21 7 11.5919 0.9177 1.6929 22 14 13.7696 0.2145 0.1312 23 1 13.8503 1.1815 -0.9930 24 1 14.6496 0.6678 1.2382 25 1 14.2107 -1.1246 -0.3353 26 6 8.8697 -1.9598 -0.0231 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.2147 2.3190 0.0005 31 1 1.3306 4.5077 0.0121 32 1 4.1383 5.3551 1.0423 33 1 4.9347 4.9660 -0.5013 34 1 3.3411 5.7589 -0.4971 35 1 5.1470 2.6082 -0.0004 36 1 3.7710 -0.9062 -0.0176 37 1 6.0867 1.1041 -0.0068 38 1 9.0737 0.3680 -1.0196 39 1 8.4657 0.9310 0.5958 40 1 10.1464 -0.2286 2.5450 41 1 12.2019 1.5648 2.0803 42 1 8.6881 -2.8423 0.5904 43 1 9.2247 -2.2078 -1.0235 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491956338.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:03 Heat of formation + Delta-G solvation = -62.595579 kcal Electronic energy + Delta-G solvation = -25589.302858 eV Core-core repulsion = 21793.835695 eV Total energy + Delta-G solvation = -3795.467163 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.41112 -41.14341 -39.23775 -38.69783 -35.90961 -35.35027 -34.12261 -32.79055 -31.38748 -30.09453 -28.73790 -27.43486 -26.87306 -26.79971 -25.01790 -22.84560 -21.89773 -20.89045 -19.73998 -19.36818 -19.02794 -18.10845 -17.50541 -17.10375 -16.73405 -16.51166 -16.30119 -16.10147 -15.83490 -15.45253 -15.02754 -14.74728 -14.60981 -14.55099 -14.46572 -14.10297 -13.78685 -13.42216 -13.40641 -13.28347 -12.95719 -12.79723 -12.74487 -12.72893 -12.26206 -12.22485 -12.14876 -11.90498 -11.85192 -11.42017 -11.31544 -11.01039 -10.66128 -10.24387 -9.74099 -9.52208 -8.85250 -8.26763 -6.44037 -0.51051 0.37649 0.93261 1.48124 1.51453 1.60956 1.97004 2.24168 2.28916 2.41961 2.79608 2.94891 3.39683 3.68950 3.72078 3.87772 3.94725 4.10854 4.13396 4.18262 4.33699 4.38454 4.38655 4.45066 4.55205 4.61116 4.65492 4.72973 4.76327 4.83969 4.88243 4.89352 4.91280 5.00983 5.18920 5.21454 5.24010 5.41396 5.47663 5.62542 5.73296 5.79203 5.91003 6.37962 6.61825 6.83955 7.12274 7.29831 7.49286 8.79679 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017641 B = 0.002848 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.838495 B = 9829.374262 C =11078.695251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.337 6.337 3 C 0.134 3.866 4 C -0.207 4.207 5 C -0.062 4.062 6 C -0.131 4.131 7 C -0.110 4.110 8 C -0.073 4.073 9 C -0.128 4.128 10 C 0.000 4.000 11 C -0.217 4.217 12 C 0.559 3.441 13 O -0.607 6.607 14 N -0.633 5.633 15 C 0.086 3.914 16 C 0.221 3.779 17 O -0.586 6.586 18 C -0.552 4.552 19 H 0.075 0.925 20 C 0.032 3.968 21 N -0.917 5.917 22 Si 0.973 3.027 23 H -0.270 1.270 24 H -0.283 1.283 25 H -0.271 1.271 26 C 0.105 3.895 27 H 0.072 0.928 28 H 0.113 0.887 29 H 0.071 0.929 30 H 0.161 0.839 31 H 0.160 0.840 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.134 0.866 36 H 0.119 0.881 37 H 0.142 0.858 38 H 0.097 0.903 39 H 0.064 0.936 40 H 0.390 0.610 41 H 0.277 0.723 42 H 0.051 0.949 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.597 10.857 -4.434 22.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.250 6.250 3 C 0.088 3.912 4 C -0.225 4.225 5 C -0.079 4.079 6 C -0.131 4.131 7 C -0.167 4.167 8 C -0.091 4.091 9 C -0.129 4.129 10 C -0.021 4.021 11 C -0.237 4.237 12 C 0.354 3.646 13 O -0.493 6.493 14 N -0.364 5.364 15 C -0.037 4.037 16 C 0.179 3.821 17 O -0.399 6.399 18 C -0.590 4.590 19 H 0.093 0.907 20 C -0.169 4.169 21 N -0.558 5.558 22 Si 0.798 3.202 23 H -0.195 1.195 24 H -0.209 1.209 25 H -0.195 1.195 26 C -0.018 4.018 27 H 0.091 0.909 28 H 0.131 0.869 29 H 0.090 0.910 30 H 0.178 0.822 31 H 0.178 0.822 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.104 0.896 35 H 0.152 0.848 36 H 0.137 0.863 37 H 0.160 0.840 38 H 0.115 0.885 39 H 0.083 0.917 40 H 0.246 0.754 41 H 0.087 0.913 42 H 0.070 0.930 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -20.351 9.753 -4.426 22.997 hybrid contribution 1.173 0.181 0.060 1.188 sum -19.178 9.934 -4.366 22.035 Atomic orbital electron populations 1.23417 0.75894 1.05651 1.02785 1.86041 1.23980 1.27058 1.87942 1.19360 0.91118 0.85491 0.95231 1.21490 1.01418 0.91248 1.08328 1.21386 0.93736 0.98091 0.94717 1.20091 0.94257 0.95913 1.02842 1.20794 1.00733 0.92050 1.03077 1.21362 1.00562 0.90486 0.96700 1.18393 0.90523 0.93212 1.10780 1.22101 0.92739 0.97577 0.89638 1.22683 0.94339 0.97007 1.09705 1.18350 0.80300 0.89954 0.76009 1.90705 1.71753 1.31519 1.55289 1.49658 1.03159 1.13397 1.70178 1.24104 0.85616 0.92450 1.01523 1.19847 0.92063 0.90706 0.79473 1.86038 1.72603 1.61596 1.19711 1.21641 0.95469 1.20158 1.21700 0.90669 1.25790 1.03047 0.93729 0.94303 1.69330 1.37843 1.21927 1.26686 0.85322 0.78368 0.78564 0.77971 1.19513 1.20853 1.19537 1.23368 0.83234 0.94518 1.00665 0.90923 0.86858 0.91044 0.82191 0.82197 0.90620 0.91562 0.89633 0.84796 0.86310 0.84026 0.88524 0.91742 0.75440 0.91292 0.92992 0.87694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.34 -8.06 9.68 -90.03 -0.87 -8.94 16 3 C 0.13 3.23 6.70 22.88 0.15 3.38 16 4 C -0.21 -3.49 9.03 22.33 0.20 -3.29 16 5 C -0.06 -0.94 9.68 22.32 0.22 -0.72 16 6 C -0.13 -2.44 5.87 -19.90 -0.12 -2.56 16 7 C -0.11 -1.49 10.00 71.23 0.71 -0.78 16 8 C -0.07 -1.77 9.05 22.57 0.20 -1.57 16 9 C -0.13 -3.60 5.88 -20.06 -0.12 -3.72 16 10 C 0.00 -0.01 9.21 23.80 0.22 0.21 16 11 C -0.22 -7.99 9.25 23.61 0.22 -7.77 16 12 C 0.56 25.45 7.99 86.32 0.69 26.14 16 13 O -0.61 -31.24 17.01 -4.41 -0.07 -31.31 16 14 N -0.63 -28.77 3.69 -863.58 -3.18 -31.95 16 15 C 0.09 3.77 7.75 83.26 0.65 4.41 16 16 C 0.22 10.90 1.58 -11.12 -0.02 10.88 16 17 O -0.59 -31.65 13.55 -148.98 -2.02 -33.67 16 18 C -0.55 -27.67 8.70 25.60 0.22 -27.45 16 19 H 0.08 3.64 7.81 -2.91 -0.02 3.62 16 20 C 0.03 1.56 5.39 84.65 0.46 2.01 16 21 N -0.92 -46.23 11.01 21.45 0.24 -46.00 16 22 Si 0.97 39.14 29.54 68.60 2.03 41.17 16 23 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 24 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 25 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 26 C 0.10 4.84 8.02 83.17 0.67 5.51 16 27 H 0.07 0.67 7.66 -2.39 -0.02 0.65 16 28 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.07 0.68 7.66 -2.39 -0.02 0.67 16 30 H 0.16 1.65 6.30 -2.91 -0.02 1.63 16 31 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 32 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.07 0.94 8.08 -2.38 -0.02 0.92 16 34 H 0.08 0.81 8.08 -2.39 -0.02 0.79 16 35 H 0.13 3.17 6.17 -2.91 -0.02 3.15 16 36 H 0.12 4.43 7.10 -2.91 -0.02 4.41 16 37 H 0.14 4.59 5.98 -2.91 -0.02 4.57 16 38 H 0.10 3.92 8.10 -2.39 -0.02 3.90 16 39 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 40 H 0.39 21.08 6.32 -74.06 -0.47 20.61 16 41 H 0.28 13.16 8.31 -92.71 -0.77 12.39 16 42 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16 43 H 0.11 4.35 8.10 -2.39 -0.02 4.33 16 Total: -1.00 -67.06 366.01 2.15 -64.91 By element: Atomic # 1 Polarization: 39.22 SS G_CDS: 0.57 Total: 39.79 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: 5.47 Total: 6.00 kcal Atomic # 7 Polarization: -75.00 SS G_CDS: -2.95 Total: -77.95 kcal Atomic # 8 Polarization: -70.95 SS G_CDS: -2.96 Total: -73.92 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 2.03 Total: 41.17 kcal Total: -67.06 2.15 -64.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491956338.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.318 kcal (2) G-P(sol) polarization free energy of solvation -67.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds