Wall clock time and date at job start Tue Mar 31 2020 11:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34226 * 116.99962 * 2 1 4 4 O 1.20832 * 120.00092 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99948 * 179.97438 * 3 2 1 6 6 N 1.46497 * 109.47168 * 179.97438 * 5 3 2 7 7 C 1.36711 * 120.00386 * 270.00138 * 6 5 3 8 8 H 1.08000 * 120.00414 * 141.00827 * 7 6 5 9 9 C 1.39125 * 119.99635 * 321.00771 * 7 6 5 10 10 N 1.31326 * 120.00187 * 166.39618 * 9 7 6 11 11 Si 1.86806 * 120.00053 * 346.39668 * 9 7 6 12 12 H 1.48495 * 109.47029 * 92.11859 * 11 9 7 13 13 H 1.48503 * 109.47101 * 212.11747 * 11 9 7 14 14 H 1.48496 * 109.46929 * 332.11424 * 11 9 7 15 15 C 1.34787 * 119.99970 * 89.99750 * 6 5 3 16 16 O 1.21757 * 119.99673 * 354.00379 * 15 6 5 17 17 C 1.46219 * 120.00027 * 173.99374 * 15 6 5 18 18 C 1.34975 * 120.00163 * 186.61277 * 17 15 6 19 19 C 1.47141 * 120.00056 * 9.63571 * 18 17 15 20 20 C 1.39874 * 120.17453 * 224.13318 * 19 18 17 21 21 C 1.37878 * 119.82157 * 179.97438 * 20 19 18 22 22 C 1.50699 * 119.91248 * 180.02562 * 21 20 19 23 23 C 1.38410 * 120.17906 * 0.02562 * 21 20 19 24 24 C 1.38418 * 120.34960 * 359.97438 * 23 21 20 25 25 C 1.50699 * 119.91592 * 179.97438 * 24 23 21 26 26 C 1.37885 * 120.17227 * 0.02614 * 24 23 21 27 27 H 1.08994 * 109.47034 * 300.00018 * 1 2 3 28 28 H 1.08999 * 109.46533 * 60.00086 * 1 2 3 29 29 H 1.08998 * 109.47087 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46857 * 59.99809 * 5 3 2 31 31 H 1.08999 * 109.46814 * 299.99801 * 5 3 2 32 32 H 0.96994 * 119.99840 * 180.02562 * 10 9 7 33 33 H 1.08005 * 120.00081 * 6.62304 * 17 15 6 34 34 H 1.08005 * 120.00050 * 189.63221 * 18 17 15 35 35 H 1.07994 * 120.08928 * 0.25437 * 20 19 18 36 36 H 1.08998 * 109.47585 * 89.99698 * 22 21 20 37 37 H 1.09002 * 109.47303 * 209.99764 * 22 21 20 38 38 H 1.09002 * 109.47285 * 329.99155 * 22 21 20 39 39 H 1.07998 * 119.83121 * 179.97438 * 23 21 20 40 40 H 1.09004 * 109.46915 * 89.99870 * 25 24 23 41 41 H 1.09002 * 109.47422 * 210.00311 * 25 24 23 42 42 H 1.09002 * 109.46906 * 330.00704 * 25 24 23 43 43 H 1.07998 * 120.08314 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9818 2.6797 -0.0002 7 6 4.1761 3.3345 -1.1844 8 1 3.8669 4.3639 -1.2894 9 6 4.7722 2.6747 -2.2544 10 7 4.7209 3.1963 -3.4585 11 14 5.6456 1.0466 -1.9783 12 1 4.6926 -0.0703 -2.2006 13 1 6.7800 0.9260 -2.9290 14 1 6.1587 0.9901 -0.5859 15 6 4.1723 3.3267 1.1668 16 8 3.8950 2.7796 2.2185 17 6 4.7123 4.6856 1.1696 18 6 5.0284 5.2837 2.3376 19 6 5.0327 4.5046 3.5857 20 6 4.4570 5.0324 4.7461 21 6 4.4647 4.2957 5.9115 22 6 3.8445 4.8622 7.1627 23 6 5.0405 3.0373 5.9355 24 6 5.6123 2.5079 4.7914 25 6 6.2370 1.1370 4.8287 26 6 5.6127 3.2321 3.6181 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.9564 0.7805 -0.8891 31 1 3.9557 0.7809 0.8908 32 1 5.1362 2.7361 -4.2045 33 1 4.8580 5.2107 0.2372 34 1 5.2782 6.3343 2.3560 35 1 4.0037 6.0124 4.7280 36 1 2.7923 4.5810 7.2062 37 1 4.3627 4.4667 8.0363 38 1 3.9300 5.9488 7.1508 39 1 5.0437 2.4653 6.8515 40 1 5.4849 0.3882 4.5801 41 1 7.0508 1.0888 4.1052 42 1 6.6270 0.9425 5.8278 43 1 6.0595 2.8178 2.7264 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492366937.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:06 Heat of formation + Delta-G solvation = -70.493673 kcal Electronic energy + Delta-G solvation = -27052.878702 eV Core-core repulsion = 23257.069052 eV Total energy + Delta-G solvation = -3795.809650 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.80457 -40.87319 -39.84343 -37.66363 -36.85169 -35.01501 -34.29893 -34.02065 -31.66616 -30.31999 -28.19001 -27.93503 -27.44030 -26.97785 -24.57030 -22.69599 -21.77726 -21.45026 -20.36887 -19.16401 -18.70051 -18.27035 -17.54595 -17.29578 -17.18195 -17.05494 -16.35146 -15.94445 -15.57793 -15.02267 -14.88054 -14.80561 -14.51521 -14.35550 -14.25841 -14.02364 -13.96015 -13.65743 -13.62867 -13.38143 -13.26979 -13.02998 -12.91990 -12.74783 -12.49632 -12.27474 -11.92375 -11.86740 -11.84574 -11.80415 -11.67616 -11.16665 -10.67898 -10.51187 -9.94846 -9.24132 -8.81583 -8.54575 -6.23995 -0.09176 0.66280 1.02331 1.07690 1.15924 1.30810 1.39716 1.57376 2.10367 2.38423 2.58773 3.00181 3.00698 3.76832 3.87884 3.88975 3.98494 4.03606 4.05035 4.24562 4.26581 4.27573 4.31958 4.54114 4.59003 4.59766 4.67139 4.72791 4.79564 4.83233 4.90131 5.01283 5.10408 5.17466 5.25660 5.26053 5.32669 5.44839 5.49280 5.75909 5.79175 5.88642 6.00277 6.11325 6.29415 6.67853 6.86475 7.26314 7.64718 8.59127 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012722 B = 0.004789 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.457736 B = 5845.498974 C = 6537.332732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.366 6.366 3 C 0.451 3.549 4 O -0.523 6.523 5 C 0.100 3.900 6 N -0.453 5.453 7 C -0.337 4.337 8 H 0.077 0.923 9 C 0.023 3.977 10 N -0.897 5.897 11 Si 0.921 3.079 12 H -0.249 1.249 13 H -0.275 1.275 14 H -0.250 1.250 15 C 0.509 3.491 16 O -0.583 6.583 17 C -0.190 4.190 18 C -0.043 4.043 19 C -0.073 4.073 20 C -0.120 4.120 21 C -0.109 4.109 22 C -0.104 4.104 23 C -0.122 4.122 24 C -0.115 4.115 25 C -0.105 4.105 26 C -0.053 4.053 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.142 0.858 30 H 0.105 0.895 31 H 0.128 0.872 32 H 0.283 0.717 33 H 0.135 0.865 34 H 0.165 0.835 35 H 0.133 0.867 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.138 0.862 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.085 0.915 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.887 -3.675 14.718 15.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.282 6.282 3 C 0.292 3.708 4 O -0.411 6.411 5 C -0.025 4.025 6 N -0.173 5.173 7 C -0.465 4.465 8 H 0.095 0.905 9 C -0.181 4.181 10 N -0.534 5.534 11 Si 0.746 3.254 12 H -0.176 1.176 13 H -0.202 1.202 14 H -0.173 1.173 15 C 0.304 3.696 16 O -0.469 6.469 17 C -0.211 4.211 18 C -0.063 4.063 19 C -0.073 4.073 20 C -0.138 4.138 21 C -0.109 4.109 22 C -0.160 4.160 23 C -0.140 4.140 24 C -0.115 4.115 25 C -0.161 4.161 26 C -0.071 4.071 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.160 0.840 30 H 0.122 0.878 31 H 0.145 0.855 32 H 0.093 0.907 33 H 0.153 0.847 34 H 0.183 0.817 35 H 0.151 0.849 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.156 0.844 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.104 0.896 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.547 -3.676 14.993 15.446 hybrid contribution -0.193 -0.380 -1.188 1.262 sum 0.353 -4.055 13.805 14.392 Atomic orbital electron populations 1.23560 0.74882 1.05930 1.02141 1.86491 1.25182 1.32440 1.84121 1.24692 0.92932 0.81612 0.71526 1.90603 1.67277 1.37606 1.45645 1.21559 0.87415 0.88135 1.05399 1.43399 1.58555 1.08957 1.06434 1.18870 1.40222 0.98911 0.88526 0.90483 1.26056 0.95899 1.01870 0.94309 1.69718 1.42016 1.41702 0.99933 0.86212 0.79466 0.79762 0.79987 1.17564 1.20162 1.17330 1.18834 0.80272 0.88136 0.82399 1.90747 1.55876 1.69574 1.30670 1.23055 1.03573 0.94823 0.99612 1.22666 0.93867 0.99589 0.90158 1.19079 0.99787 0.94855 0.93588 1.21251 1.00287 1.00650 0.91651 1.20049 0.99702 0.94907 0.96263 1.20748 1.00324 1.01371 0.93593 1.21152 0.99119 0.95616 0.98088 1.19993 1.00639 0.97477 0.93417 1.20722 0.99855 0.92301 1.03240 1.20909 0.97465 0.92864 0.95905 0.92391 0.92511 0.83960 0.87831 0.85467 0.90707 0.84708 0.81740 0.84916 0.91353 0.90265 0.90680 0.84433 0.91929 0.92110 0.89631 0.89161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 10.56 113.37 1.20 1.97 16 2 O -0.37 -13.46 10.57 -51.38 -0.54 -14.00 16 3 C 0.45 20.25 8.02 71.24 0.57 20.82 16 4 O -0.52 -26.94 16.18 21.95 0.36 -26.59 16 5 C 0.10 4.43 4.63 85.63 0.40 4.83 16 6 N -0.45 -22.32 1.68 -644.65 -1.09 -23.41 16 7 C -0.34 -18.09 8.83 84.15 0.74 -17.35 16 8 H 0.08 4.51 7.15 -2.91 -0.02 4.49 16 9 C 0.02 1.21 5.42 84.98 0.46 1.67 16 10 N -0.90 -49.70 13.95 21.69 0.30 -49.40 16 11 Si 0.92 39.24 24.68 68.60 1.69 40.93 16 12 H -0.25 -9.82 6.69 99.48 0.67 -9.15 16 13 H -0.28 -11.41 7.11 99.48 0.71 -10.71 16 14 H -0.25 -10.27 7.03 99.48 0.70 -9.57 16 15 C 0.51 24.16 6.61 86.31 0.57 24.73 16 16 O -0.58 -28.18 11.64 -4.53 -0.05 -28.23 16 17 C -0.19 -7.88 9.20 23.59 0.22 -7.66 16 18 C -0.04 -1.48 9.81 23.86 0.23 -1.24 16 19 C -0.07 -2.59 4.57 -20.15 -0.09 -2.68 16 20 C -0.12 -3.68 9.44 22.58 0.21 -3.47 16 21 C -0.11 -2.99 5.87 -19.91 -0.12 -3.10 16 22 C -0.10 -1.98 10.01 71.24 0.71 -1.27 16 23 C -0.12 -3.41 9.35 22.35 0.21 -3.20 16 24 C -0.12 -3.67 5.87 -19.91 -0.12 -3.78 16 25 C -0.10 -2.69 10.01 71.24 0.71 -1.98 16 26 C -0.05 -1.96 6.19 22.58 0.14 -1.82 16 27 H 0.06 1.62 8.13 -2.39 -0.02 1.60 16 28 H 0.06 1.62 8.13 -2.39 -0.02 1.60 16 29 H 0.14 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.10 4.49 2.69 -2.39 -0.01 4.48 16 31 H 0.13 5.17 7.51 -2.39 -0.02 5.16 16 32 H 0.28 14.45 8.31 -92.71 -0.77 13.68 16 33 H 0.14 5.62 6.63 -2.91 -0.02 5.60 16 34 H 0.17 4.23 8.06 -2.91 -0.02 4.21 16 35 H 0.13 3.43 8.06 -2.91 -0.02 3.40 16 36 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 1.22 8.08 -2.39 -0.02 1.20 16 38 H 0.07 1.23 8.08 -2.39 -0.02 1.21 16 39 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 40 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 41 H 0.06 1.54 8.08 -2.39 -0.02 1.52 16 42 H 0.08 1.69 8.08 -2.39 -0.02 1.67 16 43 H 0.09 3.65 6.98 -2.91 -0.02 3.63 16 Total: -1.00 -69.47 360.40 7.69 -61.78 By element: Atomic # 1 Polarization: 31.47 SS G_CDS: 0.97 Total: 32.44 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: 6.05 Total: 6.48 kcal Atomic # 7 Polarization: -72.02 SS G_CDS: -0.78 Total: -72.81 kcal Atomic # 8 Polarization: -68.58 SS G_CDS: -0.24 Total: -68.82 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 1.69 Total: 40.93 kcal Total: -69.47 7.69 -61.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492366937.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.719 kcal (2) G-P(sol) polarization free energy of solvation -69.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds