Wall clock time and date at job start Tue Mar 31 2020 12:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 112.90699 * 2 1 4 4 C 1.53778 * 113.61856 * 228.74740 * 2 1 3 5 5 C 1.53774 * 87.17786 * 220.06159 * 4 2 1 6 6 H 1.09000 * 113.61780 * 140.02106 * 5 4 2 7 7 N 1.46502 * 113.61562 * 270.84481 * 5 4 2 8 8 C 1.34774 * 120.00421 * 205.00094 * 7 5 4 9 9 O 1.21726 * 119.99433 * 359.97438 * 8 7 5 10 10 C 1.46247 * 120.00318 * 179.97438 * 8 7 5 11 11 C 1.35029 * 120.00016 * 173.20979 * 10 8 7 12 12 C 1.46961 * 119.99980 * 348.68358 * 11 10 8 13 13 C 1.40027 * 120.10072 * 316.40822 * 12 11 10 14 14 C 1.37594 * 119.89290 * 179.69637 * 13 12 11 15 15 C 1.39177 * 120.10313 * 0.59699 * 14 13 12 16 16 O 1.35570 * 119.89778 * 179.70047 * 15 14 13 17 17 C 1.34782 * 117.00253 * 174.34083 * 16 15 14 18 18 H 1.08005 * 119.99437 * 5.05782 * 17 16 15 19 19 C 1.38716 * 120.00509 * 185.06215 * 17 16 15 20 20 N 1.31512 * 119.99654 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00365 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47475 * 89.99392 * 21 19 17 23 23 H 1.48500 * 109.47099 * 209.99785 * 21 19 17 24 24 H 1.48500 * 109.46574 * 329.99533 * 21 19 17 25 25 C 1.39176 * 120.20526 * 359.67734 * 15 14 13 26 26 C 1.37602 * 120.09655 * 0.02562 * 25 15 14 27 27 C 1.53785 * 87.08211 * 25.38698 * 5 4 2 28 28 H 1.09001 * 109.46809 * 191.25208 * 1 2 3 29 29 H 1.09000 * 109.47125 * 311.25233 * 1 2 3 30 30 H 1.08995 * 109.46772 * 71.25415 * 1 2 3 31 31 H 0.96707 * 113.99768 * 48.74745 * 3 2 1 32 32 H 1.09002 * 113.61506 * 105.46415 * 4 2 1 33 33 H 1.09002 * 113.61320 * 334.65252 * 4 2 1 34 34 H 0.97001 * 119.99643 * 24.99506 * 7 5 4 35 35 H 1.07995 * 120.00073 * 353.21395 * 10 8 7 36 36 H 1.08002 * 119.99707 * 168.68513 * 11 10 8 37 37 H 1.07994 * 120.04863 * 359.97438 * 13 12 11 38 38 H 1.08005 * 119.94795 * 180.27647 * 14 13 12 39 39 H 0.97001 * 119.99869 * 180.02562 * 20 19 17 40 40 H 1.07991 * 119.95228 * 180.02562 * 25 15 14 41 41 H 1.08001 * 120.04743 * 179.97438 * 26 25 15 42 42 H 1.09005 * 113.60952 * 89.11507 * 27 5 4 43 43 H 1.08997 * 113.61903 * 219.93511 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0862 1.3163 0.0000 4 6 2.1461 -0.9290 -1.0593 5 6 3.1928 -1.3159 -0.0013 6 1 3.4443 -2.3765 -0.0032 7 7 4.3752 -0.4509 -0.0016 8 6 5.5503 -0.9155 0.4669 9 8 5.6291 -2.0538 0.8909 10 6 6.7307 -0.0521 0.4660 11 6 7.8709 -0.4667 1.0588 12 6 7.8620 -1.6620 1.9138 13 6 6.8270 -1.8576 2.8365 14 6 6.8196 -2.9814 3.6305 15 6 7.8451 -3.9165 3.5263 16 8 7.8368 -5.0192 4.3150 17 6 8.7913 -5.9428 4.0856 18 1 9.5660 -5.7495 3.3583 19 6 8.7786 -7.1415 4.7835 20 7 7.8355 -7.3766 5.6694 21 14 10.1019 -8.4212 4.4662 22 1 11.2473 -8.1866 5.3817 23 1 9.5465 -9.7775 4.7056 24 1 10.5638 -8.3169 3.0587 25 6 8.8788 -3.7234 2.6147 26 6 8.8914 -2.6057 1.8122 27 6 2.1481 -0.9306 1.0594 28 1 -0.3633 -1.0079 0.2005 29 1 -0.3633 0.6776 0.7726 30 1 -0.3633 0.3303 -0.9731 31 1 1.7027 1.9053 0.6642 32 1 2.5651 -0.3988 -1.9145 33 1 1.4941 -1.7527 -1.3500 34 1 4.3122 0.4563 -0.3392 35 1 6.6905 0.9171 -0.0087 36 1 8.7894 0.0801 0.9046 37 1 6.0337 -1.1299 2.9216 38 1 6.0194 -3.1354 4.3394 39 1 7.8268 -8.2147 6.1578 40 1 9.6723 -4.4518 2.5370 41 1 9.6942 -2.4564 1.1054 42 1 1.4956 -1.7543 1.3490 43 1 2.5688 -0.4029 1.9153 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493555823.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:56 Heat of formation + Delta-G solvation = -35.517921 kcal Electronic energy + Delta-G solvation = -25826.301619 eV Core-core repulsion = 22032.008632 eV Total energy + Delta-G solvation = -3794.292987 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.52369 -39.22964 -38.44183 -36.42232 -35.20556 -33.02432 -32.87990 -32.06109 -30.07719 -29.46313 -27.87241 -26.06052 -25.42806 -23.86604 -22.26126 -21.74258 -21.00590 -19.61142 -19.21523 -17.88936 -17.20314 -16.71595 -16.61191 -15.91831 -15.37464 -14.91689 -14.71517 -14.48593 -14.36596 -14.18155 -13.87439 -13.51228 -13.34503 -13.21376 -12.95635 -12.87801 -12.55997 -12.40341 -12.13878 -11.96602 -11.81997 -11.66384 -11.44649 -11.31214 -10.97763 -10.64239 -10.58509 -10.53586 -10.38374 -9.93492 -9.43822 -9.35732 -9.11148 -8.83503 -8.65701 -7.87613 -6.81852 -6.42929 -3.98642 1.30321 2.46517 2.74754 3.15426 3.16937 3.21227 3.32159 3.67814 3.75408 3.99654 4.19179 4.39311 4.61432 4.70848 4.73673 5.11819 5.14812 5.19426 5.29115 5.30147 5.35908 5.39583 5.42398 5.60715 5.63984 5.67765 5.77902 5.81976 5.87913 5.89555 5.95341 6.29302 6.38995 6.50152 6.65082 6.74310 6.83853 7.07925 7.16009 7.30338 7.40684 7.49915 7.54097 7.84105 7.96491 8.04049 8.65079 9.02899 9.75382 10.75082 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019008 B = 0.002759 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.705173 B =10147.251342 C =11070.602723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.102 3.898 3 O -0.545 6.545 4 C -0.136 4.136 5 C 0.130 3.870 6 H 0.103 0.897 7 N -0.712 5.712 8 C 0.539 3.461 9 O -0.514 6.514 10 C -0.264 4.264 11 C 0.025 3.975 12 C -0.188 4.188 13 C 0.013 3.987 14 C -0.203 4.203 15 C 0.171 3.829 16 O -0.174 6.174 17 C -0.389 4.389 18 H 0.093 0.907 19 C 0.039 3.961 20 N -0.861 5.861 21 Si 0.942 3.058 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.251 4.251 26 C -0.042 4.042 27 C -0.178 4.178 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.380 0.620 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.402 0.598 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.100 0.900 38 H 0.113 0.887 39 H 0.270 0.730 40 H 0.126 0.874 41 H 0.106 0.894 42 H 0.095 0.905 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.520 16.862 -12.050 23.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.061 3.939 3 O -0.351 6.351 4 C -0.174 4.174 5 C 0.024 3.976 6 H 0.121 0.879 7 N -0.365 5.365 8 C 0.329 3.671 9 O -0.390 6.390 10 C -0.285 4.285 11 C 0.005 3.995 12 C -0.189 4.189 13 C -0.005 4.005 14 C -0.222 4.222 15 C 0.116 3.884 16 O -0.076 6.076 17 C -0.465 4.465 18 H 0.111 0.889 19 C -0.166 4.166 20 N -0.496 5.496 21 Si 0.766 3.234 22 H -0.199 1.199 23 H -0.202 1.202 24 H -0.191 1.191 25 C -0.270 4.270 26 C -0.061 4.061 27 C -0.217 4.217 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.228 0.772 32 H 0.098 0.902 33 H 0.123 0.877 34 H 0.237 0.763 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.118 0.882 38 H 0.131 0.869 39 H 0.080 0.920 40 H 0.143 0.857 41 H 0.124 0.876 42 H 0.114 0.886 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.318 15.492 -11.872 22.077 hybrid contribution 0.140 0.123 0.012 0.187 sum -10.178 15.615 -11.860 22.092 Atomic orbital electron populations 1.22284 0.94925 1.02982 1.02401 1.22292 0.91588 0.82939 0.97088 1.86412 1.65756 1.21909 1.61044 1.23468 0.98009 0.98525 0.97390 1.21564 0.84699 0.96292 0.95063 0.87850 1.45656 1.08356 1.16669 1.65782 1.18523 0.83050 0.87925 0.77578 1.90988 1.84267 1.19041 1.44721 1.22604 0.94785 1.01073 1.10086 1.22328 0.96031 0.92600 0.88491 1.18295 0.99472 0.98089 1.03019 1.20429 0.93377 0.94905 0.91802 1.19995 1.00052 0.96218 1.05933 1.19520 0.92538 0.87723 0.88569 1.83905 1.49818 1.24857 1.49044 1.21392 1.05655 0.95187 1.24312 0.88916 1.25319 0.98223 0.97278 0.95762 1.70027 1.31717 1.24933 1.22885 0.85702 0.79444 0.79161 0.79079 1.19856 1.20249 1.19144 1.20947 1.02238 1.01100 1.02714 1.20743 0.95713 0.93254 0.96348 1.24206 0.98974 1.00222 0.98303 0.91119 0.92246 0.91848 0.77219 0.90182 0.87698 0.76306 0.86190 0.86107 0.88155 0.86912 0.92002 0.85679 0.87627 0.88618 0.90499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.01 9.45 37.16 0.35 -0.66 16 2 C 0.10 0.79 1.82 -89.71 -0.16 0.63 16 3 O -0.55 -4.21 12.16 -35.23 -0.43 -4.64 16 4 C -0.14 -1.16 7.21 -25.92 -0.19 -1.35 16 5 C 0.13 1.50 4.32 -67.12 -0.29 1.21 16 6 H 0.10 1.43 7.46 -51.93 -0.39 1.04 16 7 N -0.71 -8.68 5.15 -54.46 -0.28 -8.96 16 8 C 0.54 8.37 6.77 -13.04 -0.09 8.28 16 9 O -0.51 -10.30 11.78 5.17 0.06 -10.24 16 10 C -0.26 -3.54 9.90 -37.51 -0.37 -3.91 16 11 C 0.03 0.37 9.80 -37.19 -0.36 0.00 16 12 C -0.19 -3.57 4.54 -105.03 -0.48 -4.05 16 13 C 0.01 0.28 6.59 -39.15 -0.26 0.02 16 14 C -0.20 -4.75 9.97 -39.47 -0.39 -5.14 16 15 C 0.17 4.43 6.66 -38.88 -0.26 4.17 16 16 O -0.17 -5.17 9.74 0.74 0.01 -5.17 16 17 C -0.39 -11.23 9.48 30.91 0.29 -10.94 16 18 H 0.09 2.48 5.18 -52.48 -0.27 2.21 16 19 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 20 N -0.86 -25.77 13.67 55.48 0.76 -25.01 16 21 Si 0.94 20.96 29.55 -169.99 -5.02 15.94 16 22 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 23 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 25 C -0.25 -5.83 9.14 -39.47 -0.36 -6.19 16 26 C -0.04 -0.84 9.78 -39.15 -0.38 -1.22 16 27 C -0.18 -1.74 7.27 -25.82 -0.19 -1.92 16 28 H 0.07 0.40 7.95 -51.93 -0.41 -0.01 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.38 1.66 9.04 45.56 0.41 2.07 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.10 0.73 8.10 -51.93 -0.42 0.31 16 34 H 0.40 4.16 7.58 -40.82 -0.31 3.85 16 35 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 36 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.10 1.89 7.02 -52.49 -0.37 1.53 16 38 H 0.11 2.58 8.06 -52.48 -0.42 2.15 16 39 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.13 2.87 5.62 -52.49 -0.29 2.58 16 41 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 42 H 0.10 0.86 7.96 -51.93 -0.41 0.44 16 43 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 360.61 15.07 5.43 5.43 Total: -1.00 -34.68 360.61 -7.69 -42.37 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -4.98 Total: 10.35 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: -3.24 Total: -20.08 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.48 Total: -33.97 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.36 Total: -20.05 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.68 -7.69 -42.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493555823.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.856 kcal (2) G-P(sol) polarization free energy of solvation -34.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds