Wall clock time and date at job start Tue Mar 31 2020 12:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 112.90699 * 2 1 4 4 C 1.53778 * 113.61856 * 228.74740 * 2 1 3 5 5 C 1.53774 * 87.17786 * 220.06159 * 4 2 1 6 6 H 1.09000 * 113.61780 * 140.02106 * 5 4 2 7 7 N 1.46502 * 113.61562 * 270.84481 * 5 4 2 8 8 C 1.34774 * 120.00421 * 205.00094 * 7 5 4 9 9 O 1.21726 * 119.99433 * 359.97438 * 8 7 5 10 10 C 1.46247 * 120.00318 * 179.97438 * 8 7 5 11 11 C 1.35029 * 120.00016 * 173.20979 * 10 8 7 12 12 C 1.46961 * 119.99980 * 348.68358 * 11 10 8 13 13 C 1.40027 * 120.10072 * 316.40822 * 12 11 10 14 14 C 1.37594 * 119.89290 * 179.69637 * 13 12 11 15 15 C 1.39177 * 120.10313 * 0.59699 * 14 13 12 16 16 O 1.35570 * 119.89778 * 179.70047 * 15 14 13 17 17 C 1.34782 * 117.00253 * 174.34083 * 16 15 14 18 18 H 1.08005 * 119.99437 * 5.05782 * 17 16 15 19 19 C 1.38716 * 120.00509 * 185.06215 * 17 16 15 20 20 N 1.31512 * 119.99654 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00365 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47475 * 89.99392 * 21 19 17 23 23 H 1.48500 * 109.47099 * 209.99785 * 21 19 17 24 24 H 1.48500 * 109.46574 * 329.99533 * 21 19 17 25 25 C 1.39176 * 120.20526 * 359.67734 * 15 14 13 26 26 C 1.37602 * 120.09655 * 0.02562 * 25 15 14 27 27 C 1.53785 * 87.08211 * 25.38698 * 5 4 2 28 28 H 1.09001 * 109.46809 * 191.25208 * 1 2 3 29 29 H 1.09000 * 109.47125 * 311.25233 * 1 2 3 30 30 H 1.08995 * 109.46772 * 71.25415 * 1 2 3 31 31 H 0.96707 * 113.99768 * 48.74745 * 3 2 1 32 32 H 1.09002 * 113.61506 * 105.46415 * 4 2 1 33 33 H 1.09002 * 113.61320 * 334.65252 * 4 2 1 34 34 H 0.97001 * 119.99643 * 24.99506 * 7 5 4 35 35 H 1.07995 * 120.00073 * 353.21395 * 10 8 7 36 36 H 1.08002 * 119.99707 * 168.68513 * 11 10 8 37 37 H 1.07994 * 120.04863 * 359.97438 * 13 12 11 38 38 H 1.08005 * 119.94795 * 180.27647 * 14 13 12 39 39 H 0.97001 * 119.99869 * 180.02562 * 20 19 17 40 40 H 1.07991 * 119.95228 * 180.02562 * 25 15 14 41 41 H 1.08001 * 120.04743 * 179.97438 * 26 25 15 42 42 H 1.09005 * 113.60952 * 89.11507 * 27 5 4 43 43 H 1.08997 * 113.61903 * 219.93511 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0862 1.3163 0.0000 4 6 2.1461 -0.9290 -1.0593 5 6 3.1928 -1.3159 -0.0013 6 1 3.4443 -2.3765 -0.0032 7 7 4.3752 -0.4509 -0.0016 8 6 5.5503 -0.9155 0.4669 9 8 5.6291 -2.0538 0.8909 10 6 6.7307 -0.0521 0.4660 11 6 7.8709 -0.4667 1.0588 12 6 7.8620 -1.6620 1.9138 13 6 6.8270 -1.8576 2.8365 14 6 6.8196 -2.9814 3.6305 15 6 7.8451 -3.9165 3.5263 16 8 7.8368 -5.0192 4.3150 17 6 8.7913 -5.9428 4.0856 18 1 9.5660 -5.7495 3.3583 19 6 8.7786 -7.1415 4.7835 20 7 7.8355 -7.3766 5.6694 21 14 10.1019 -8.4212 4.4662 22 1 11.2473 -8.1866 5.3817 23 1 9.5465 -9.7775 4.7056 24 1 10.5638 -8.3169 3.0587 25 6 8.8788 -3.7234 2.6147 26 6 8.8914 -2.6057 1.8122 27 6 2.1481 -0.9306 1.0594 28 1 -0.3633 -1.0079 0.2005 29 1 -0.3633 0.6776 0.7726 30 1 -0.3633 0.3303 -0.9731 31 1 1.7027 1.9053 0.6642 32 1 2.5651 -0.3988 -1.9145 33 1 1.4941 -1.7527 -1.3500 34 1 4.3122 0.4563 -0.3392 35 1 6.6905 0.9171 -0.0087 36 1 8.7894 0.0801 0.9046 37 1 6.0337 -1.1299 2.9216 38 1 6.0194 -3.1354 4.3394 39 1 7.8268 -8.2147 6.1578 40 1 9.6723 -4.4518 2.5370 41 1 9.6942 -2.4564 1.1054 42 1 1.4956 -1.7543 1.3490 43 1 2.5688 -0.4029 1.9153 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493555823.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:55 Heat of formation + Delta-G solvation = -61.396519 kcal Electronic energy + Delta-G solvation = -25827.423799 eV Core-core repulsion = 22032.008632 eV Total energy + Delta-G solvation = -3795.415167 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.48496 -40.76692 -39.86823 -38.10815 -36.02356 -34.59018 -34.07856 -33.73804 -31.82525 -30.24779 -29.33931 -27.43074 -26.81544 -25.08292 -23.59313 -23.23614 -22.40483 -20.56827 -20.43387 -19.75555 -18.87539 -18.13543 -17.33799 -16.94883 -16.39926 -16.37589 -16.24456 -15.84400 -15.61829 -15.53628 -15.42599 -14.92401 -14.62299 -14.51173 -14.41022 -14.07368 -13.72435 -13.59494 -13.55348 -13.06092 -13.04865 -12.73394 -12.57143 -12.54003 -12.34262 -12.22841 -12.21382 -12.12246 -11.25217 -11.24215 -10.95922 -10.68123 -10.60405 -10.38492 -9.94645 -9.55678 -8.55715 -8.48574 -6.15992 -0.01069 0.71238 1.12397 1.33260 1.45286 1.51992 2.17029 2.33753 2.47131 2.86812 3.12159 3.20355 3.46470 3.52072 3.69947 3.87690 3.98530 4.01119 4.07599 4.15884 4.17774 4.54078 4.57630 4.59390 4.63272 4.71605 4.76429 4.81712 4.85723 4.96858 5.05121 5.07298 5.09535 5.16723 5.25745 5.26585 5.31114 5.46459 5.67286 5.72073 5.73195 5.85179 6.02215 6.24620 6.75270 6.88793 6.95167 7.48626 7.77272 8.74611 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019008 B = 0.002759 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.705173 B =10147.251342 C =11070.602723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.117 3.883 3 O -0.554 6.554 4 C -0.126 4.126 5 C 0.110 3.890 6 H 0.071 0.929 7 N -0.693 5.693 8 C 0.525 3.475 9 O -0.569 6.569 10 C -0.232 4.232 11 C 0.006 3.994 12 C -0.161 4.161 13 C 0.016 3.984 14 C -0.221 4.221 15 C 0.128 3.872 16 O -0.231 6.231 17 C -0.416 4.416 18 H 0.102 0.898 19 C -0.024 4.024 20 N -0.921 5.921 21 Si 1.022 2.978 22 H -0.259 1.259 23 H -0.270 1.270 24 H -0.254 1.254 25 C -0.259 4.259 26 C -0.048 4.048 27 C -0.179 4.179 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.395 0.605 32 H 0.083 0.917 33 H 0.120 0.880 34 H 0.415 0.585 35 H 0.171 0.829 36 H 0.170 0.830 37 H 0.116 0.884 38 H 0.100 0.900 39 H 0.273 0.727 40 H 0.121 0.879 41 H 0.149 0.851 42 H 0.099 0.901 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.206 20.302 -15.281 27.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.075 3.925 3 O -0.363 6.363 4 C -0.164 4.164 5 C 0.004 3.996 6 H 0.089 0.911 7 N -0.345 5.345 8 C 0.316 3.684 9 O -0.450 6.450 10 C -0.252 4.252 11 C -0.013 4.013 12 C -0.161 4.161 13 C -0.003 4.003 14 C -0.241 4.241 15 C 0.077 3.923 16 O -0.137 6.137 17 C -0.492 4.492 18 H 0.120 0.880 19 C -0.221 4.221 20 N -0.559 5.559 21 Si 0.841 3.159 22 H -0.184 1.184 23 H -0.195 1.195 24 H -0.177 1.177 25 C -0.278 4.278 26 C -0.065 4.065 27 C -0.218 4.218 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.246 0.754 32 H 0.101 0.899 33 H 0.138 0.862 34 H 0.253 0.747 35 H 0.188 0.812 36 H 0.187 0.813 37 H 0.134 0.866 38 H 0.118 0.882 39 H 0.083 0.917 40 H 0.138 0.862 41 H 0.166 0.834 42 H 0.118 0.882 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.044 19.045 -15.151 26.328 hybrid contribution -0.175 -0.499 0.750 0.918 sum -10.219 18.546 -14.401 25.608 Atomic orbital electron populations 1.22247 0.93150 1.03583 1.03235 1.22111 0.92688 0.82656 0.95002 1.86362 1.66283 1.21854 1.61801 1.23463 0.96903 0.99229 0.96797 1.21735 0.85281 0.94662 0.97967 0.91119 1.45539 1.07768 1.17138 1.64051 1.19144 0.84553 0.87609 0.77085 1.90993 1.85257 1.21484 1.47275 1.23047 0.92532 1.01745 1.07923 1.22582 0.98600 0.91275 0.88878 1.18870 0.97123 0.98803 1.01326 1.20632 0.94300 0.94005 0.91324 1.20164 0.99677 0.97433 1.06780 1.19990 0.94479 0.87711 0.90131 1.83873 1.51473 1.26648 1.51721 1.21894 1.06166 0.95952 1.25156 0.88026 1.26682 1.00967 0.99341 0.95159 1.70180 1.34681 1.26041 1.25034 0.84548 0.76084 0.75615 0.79678 1.18414 1.19453 1.17722 1.21092 1.01418 1.02408 1.02880 1.21186 0.97278 0.91877 0.96202 1.24227 0.98640 1.01023 0.97912 0.90857 0.91148 0.91134 0.75397 0.89881 0.86188 0.74731 0.81211 0.81261 0.86600 0.88169 0.91750 0.86157 0.83373 0.88245 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.45 71.98 0.68 -0.82 16 2 C 0.12 1.52 1.82 -10.21 -0.02 1.50 16 3 O -0.55 -6.74 12.16 -148.98 -1.81 -8.55 16 4 C -0.13 -1.88 7.21 31.12 0.22 -1.66 16 5 C 0.11 2.44 4.32 45.52 0.20 2.64 16 6 H 0.07 2.04 7.46 -2.39 -0.02 2.03 16 7 N -0.69 -15.30 5.15 -444.42 -2.29 -17.58 16 8 C 0.53 15.08 6.77 86.32 0.58 15.66 16 9 O -0.57 -22.72 11.78 -4.43 -0.05 -22.78 16 10 C -0.23 -5.01 9.90 23.61 0.23 -4.78 16 11 C 0.01 0.14 9.80 23.82 0.23 0.38 16 12 C -0.16 -5.76 4.54 -20.13 -0.09 -5.85 16 13 C 0.02 0.65 6.59 22.55 0.15 0.80 16 14 C -0.22 -11.06 9.97 22.34 0.22 -10.83 16 15 C 0.13 7.08 6.66 22.72 0.15 7.23 16 16 O -0.23 -14.98 9.74 -20.27 -0.20 -15.17 16 17 C -0.42 -25.63 9.48 67.93 0.64 -24.99 16 18 H 0.10 5.76 5.18 -2.91 -0.02 5.75 16 19 C -0.02 -1.44 5.49 84.86 0.47 -0.97 16 20 N -0.92 -58.87 13.67 21.62 0.30 -58.58 16 21 Si 1.02 44.58 29.55 68.60 2.03 46.61 16 22 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 23 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 24 H -0.25 -10.33 7.11 99.48 0.71 -9.62 16 25 C -0.26 -12.43 9.14 22.34 0.20 -12.22 16 26 C -0.05 -1.82 9.78 22.55 0.22 -1.60 16 27 C -0.18 -3.33 7.27 31.18 0.23 -3.11 16 28 H 0.07 0.65 7.95 -2.39 -0.02 0.63 16 29 H 0.07 0.50 8.14 -2.39 -0.02 0.49 16 30 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.40 2.13 9.04 -74.05 -0.67 1.46 16 32 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.12 1.43 8.10 -2.39 -0.02 1.41 16 34 H 0.41 7.04 7.58 -92.71 -0.70 6.34 16 35 H 0.17 2.10 8.06 -2.91 -0.02 2.07 16 36 H 0.17 2.62 8.06 -2.91 -0.02 2.60 16 37 H 0.12 4.32 7.02 -2.91 -0.02 4.30 16 38 H 0.10 5.06 8.06 -2.91 -0.02 5.03 16 39 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 40 H 0.12 5.76 5.62 -2.92 -0.02 5.74 16 41 H 0.15 4.38 8.06 -2.91 -0.02 4.35 16 42 H 0.10 1.75 7.96 -2.38 -0.02 1.73 16 43 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -84.59 360.61 1.98 -82.61 By element: Atomic # 1 Polarization: 32.38 SS G_CDS: -0.32 Total: 32.06 kcal Atomic # 6 Polarization: -42.95 SS G_CDS: 4.33 Total: -38.62 kcal Atomic # 7 Polarization: -74.17 SS G_CDS: -1.99 Total: -76.16 kcal Atomic # 8 Polarization: -44.44 SS G_CDS: -2.06 Total: -46.50 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -84.59 1.98 -82.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493555823.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.216 kcal (2) G-P(sol) polarization free energy of solvation -84.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds