Wall clock time and date at job start Tue Mar 31 2020 11:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35980 * 117.00082 * 2 1 4 4 C 1.39295 * 119.90734 * 0.02562 * 3 2 1 5 5 C 1.37709 * 120.69720 * 179.70305 * 4 3 2 6 6 C 1.39019 * 120.07303 * 0.02562 * 5 4 3 7 7 O 1.34823 * 133.08656 * 179.97438 * 6 5 4 8 8 C 1.34930 * 110.85807 * 180.02562 * 7 6 5 9 9 C 1.46981 * 125.12931 * 179.97438 * 8 7 6 10 10 O 1.21661 * 119.99567 * 180.02562 * 9 8 7 11 11 N 1.34769 * 120.00253 * 0.02788 * 9 8 7 12 12 C 1.46501 * 120.00333 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47558 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47243 * 179.97438 * 13 12 11 15 15 C 1.50705 * 109.46980 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99941 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99576 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00381 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99709 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47059 * 89.99669 * 19 17 15 21 21 H 1.48494 * 109.47084 * 209.99935 * 19 17 15 22 22 H 1.48500 * 109.47194 * 330.00215 * 19 17 15 23 23 C 1.35810 * 109.73928 * 359.97438 * 8 7 6 24 24 C 1.50693 * 126.95986 * 179.97438 * 23 8 7 25 25 C 1.40682 * 119.34319 * 359.97438 * 6 5 4 26 26 C 1.38043 * 119.90946 * 179.72484 * 3 2 1 27 27 H 1.08989 * 109.47111 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.46820 * 299.99786 * 1 2 3 29 29 H 1.09002 * 109.47235 * 59.99630 * 1 2 3 30 30 H 1.07999 * 119.65011 * 359.71845 * 4 3 2 31 31 H 1.08002 * 119.96783 * 180.02562 * 5 4 3 32 32 H 0.97003 * 119.99777 * 359.97438 * 11 9 8 33 33 H 1.09001 * 109.46448 * 300.00134 * 12 11 9 34 34 H 1.08994 * 109.47125 * 59.99402 * 12 11 9 35 35 H 1.09000 * 109.46659 * 299.99897 * 13 12 11 36 36 H 1.08998 * 109.47179 * 59.99095 * 13 12 11 37 37 H 1.08997 * 109.47075 * 299.99755 * 14 13 12 38 38 H 1.09003 * 109.46767 * 59.99973 * 14 13 12 39 39 H 0.97001 * 120.00209 * 180.02562 * 18 17 15 40 40 H 1.08997 * 109.47456 * 90.02693 * 24 23 8 41 41 H 1.09006 * 109.47006 * 210.02532 * 24 23 8 42 42 H 1.09001 * 109.47278 * 330.01984 * 24 23 8 43 43 H 1.08000 * 120.22284 * 0.25090 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2858 2.3786 0.0005 5 6 1.8940 3.6141 0.0067 6 6 3.2811 3.7077 0.0119 7 8 4.1336 4.7521 0.0179 8 6 5.4142 4.3270 0.0207 9 6 6.5956 5.2013 0.0266 10 8 7.7113 4.7162 0.0283 11 7 6.4430 6.5403 0.0303 12 6 7.6206 7.4119 0.0356 13 6 7.1725 8.8747 0.0396 14 6 8.4024 9.7848 0.0458 15 6 7.9609 11.2258 0.0491 16 1 6.9085 11.4681 0.0474 17 6 8.9007 12.2346 0.0543 18 7 10.1823 11.9394 0.0560 19 14 8.3536 14.0207 0.0591 20 1 8.2057 14.4893 1.4604 21 1 9.3693 14.8514 -0.6361 22 1 7.0507 14.1412 -0.6431 23 6 5.4467 2.9693 0.0172 24 6 6.6722 2.0923 0.0181 25 6 4.0515 2.5306 0.0114 26 6 3.4250 1.2816 0.0057 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 0.2078 2.3138 -0.0037 31 1 1.2929 4.5113 0.0075 32 1 5.5534 6.9271 0.0286 33 1 8.2162 7.2122 0.9265 34 1 8.2204 7.2176 -0.8534 35 1 6.5767 9.0745 -0.8510 36 1 6.5728 9.0686 0.9289 37 1 8.9978 9.5848 0.9366 38 1 9.0023 9.5909 -0.8433 39 1 10.8435 12.6492 0.0600 40 1 6.9647 1.8778 1.0459 41 1 6.4512 1.1586 -0.4992 42 1 7.4871 2.6061 -0.4919 43 1 4.0153 0.3772 0.0062 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000521226042.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:32 Heat of formation + Delta-G solvation = -61.570846 kcal Electronic energy + Delta-G solvation = -24874.956982 eV Core-core repulsion = 21079.534256 eV Total energy + Delta-G solvation = -3795.422727 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.75446 -40.11198 -39.36266 -36.85060 -35.65866 -34.07251 -33.35036 -31.37308 -30.96501 -29.81283 -28.09904 -27.48719 -26.63117 -24.46942 -23.00367 -22.56470 -20.96665 -20.68394 -20.07558 -18.66667 -17.83104 -17.39590 -16.70430 -16.44971 -16.14894 -16.09485 -15.56381 -15.20289 -14.88621 -14.46986 -14.42308 -13.88771 -13.85978 -13.57831 -13.39895 -13.23167 -12.83941 -12.78894 -12.60703 -12.30809 -12.07768 -11.87019 -11.79243 -11.28922 -11.16974 -10.91823 -10.77283 -10.62238 -10.24925 -10.16859 -9.89983 -9.45800 -9.14299 -9.00585 -8.56971 -8.38241 -8.29330 -6.02875 -4.05969 0.23596 0.99868 1.56846 2.26565 2.75768 3.09373 3.23719 3.26197 3.30430 3.36915 3.39906 4.19275 4.22030 4.38291 4.43643 4.63205 4.64568 4.68683 4.75486 4.84922 5.00725 5.04878 5.31103 5.33005 5.44504 5.57290 5.61416 5.70547 5.71781 5.77493 5.83012 5.91117 5.95968 6.10443 6.17078 6.35073 6.55203 6.63022 6.78154 6.93885 6.95754 7.53389 7.61779 7.73828 7.95465 8.09809 8.36719 9.00481 9.58304 11.08334 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026962 B = 0.002025 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.238638 B =13821.811512 C =14823.693999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.316 6.316 3 C 0.106 3.894 4 C -0.167 4.167 5 C -0.069 4.069 6 C 0.039 3.961 7 O -0.181 6.181 8 C -0.019 4.019 9 C 0.592 3.408 10 O -0.515 6.515 11 N -0.710 5.710 12 C 0.115 3.885 13 C -0.122 4.122 14 C 0.024 3.976 15 C -0.523 4.523 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.090 4.090 24 C -0.093 4.093 25 C -0.100 4.100 26 C -0.099 4.099 27 H 0.101 0.899 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.142 0.858 31 H 0.140 0.860 32 H 0.405 0.595 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.261 0.739 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.093 0.907 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.060 -24.570 -0.144 31.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.230 6.230 3 C 0.061 3.939 4 C -0.185 4.185 5 C -0.087 4.087 6 C -0.008 4.008 7 O -0.084 6.084 8 C -0.069 4.069 9 C 0.377 3.623 10 O -0.393 6.393 11 N -0.359 5.359 12 C -0.007 4.007 13 C -0.160 4.160 14 C -0.014 4.014 15 C -0.561 4.561 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.532 5.532 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.094 4.094 24 C -0.149 4.149 25 C -0.101 4.101 26 C -0.118 4.118 27 H 0.119 0.881 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.160 0.840 31 H 0.158 0.842 32 H 0.240 0.760 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.071 0.929 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.112 0.888 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -19.053 -24.700 -0.147 31.195 hybrid contribution -1.049 1.332 0.026 1.696 sum -20.102 -23.368 -0.121 30.824 Atomic orbital electron populations 1.23087 0.78208 1.04163 1.01428 1.86095 1.21442 1.26257 1.89159 1.18634 0.91756 0.84373 0.99112 1.21068 1.00325 0.90925 1.06215 1.19727 0.88946 0.98437 1.01599 1.19574 0.91811 0.84789 1.04676 1.84045 1.14216 1.33412 1.76689 1.21973 0.82471 0.93581 1.08834 1.16668 0.85667 0.82045 0.77959 1.90854 1.22883 1.74716 1.50817 1.46173 1.11778 1.05193 1.72770 1.21789 0.86279 0.90176 1.02485 1.21912 1.01715 0.91250 1.01125 1.19036 0.91504 0.93103 0.97741 1.21198 0.92837 0.91093 1.50998 0.92620 1.25027 0.94931 0.99242 0.95256 1.69961 1.00049 1.32699 1.50510 0.86576 0.78369 0.84840 0.78099 1.20662 1.21197 1.19903 1.21323 0.93910 0.92269 1.01853 1.20445 0.93520 0.97748 1.03196 1.19464 0.92456 0.93265 1.04894 1.19613 0.91232 0.96582 1.04345 0.88092 0.92527 0.92520 0.84038 0.84218 0.76040 0.91178 0.91179 0.92555 0.92559 0.96182 0.96172 0.92917 0.90443 0.91339 0.88822 0.84373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 9.81 101.05 0.99 1.10 16 2 O -0.32 -2.58 10.49 -19.68 -0.21 -2.79 16 3 C 0.11 0.96 6.68 -39.26 -0.26 0.70 16 4 C -0.17 -1.28 9.01 -39.38 -0.35 -1.63 16 5 C -0.07 -0.61 10.05 -39.49 -0.40 -1.01 16 6 C 0.04 0.46 7.40 -38.37 -0.28 0.18 16 7 O -0.18 -2.37 10.28 2.52 0.03 -2.35 16 8 C -0.02 -0.26 7.07 -36.91 -0.26 -0.52 16 9 C 0.59 9.23 7.79 -12.72 -0.10 9.13 16 10 O -0.51 -9.17 14.62 5.22 0.08 -9.09 16 11 N -0.71 -10.63 5.55 -61.53 -0.34 -10.97 16 12 C 0.11 1.98 5.67 -4.04 -0.02 1.96 16 13 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 14 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 15 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 16 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 19 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 C -0.09 -1.16 6.39 -102.27 -0.65 -1.81 16 24 C -0.09 -1.02 9.81 36.00 0.35 -0.67 16 25 C -0.10 -1.18 6.36 -105.20 -0.67 -1.85 16 26 C -0.10 -1.00 10.04 -39.10 -0.39 -1.40 16 27 H 0.10 0.24 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.18 7.66 -51.92 -0.40 -0.22 16 29 H 0.06 0.18 7.65 -51.93 -0.40 -0.22 16 30 H 0.14 0.66 6.26 -52.49 -0.33 0.33 16 31 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.40 5.27 8.19 -40.82 -0.33 4.93 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.09 1.17 6.37 -51.93 -0.33 0.84 16 43 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 367.56 15.07 5.54 5.54 Total: -1.00 -32.58 367.56 -7.91 -40.49 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -5.98 Total: -0.15 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -2.74 Total: -11.20 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.39 Total: -36.89 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.10 Total: -14.23 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.58 -7.91 -40.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521226042.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.077 kcal (2) G-P(sol) polarization free energy of solvation -32.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds