Wall clock time and date at job start Tue Mar 31 2020 11:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 120.00186 * 2 1 4 4 H 1.48498 * 109.47511 * 240.00072 * 3 2 1 5 5 H 1.48504 * 109.47206 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47466 * 119.99978 * 3 2 1 7 7 C 1.37885 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99867 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99943 * 0.02562 * 7 2 1 10 10 C 1.53121 * 109.52209 * 179.97438 * 9 7 2 11 11 C 1.53032 * 109.28281 * 182.37909 * 10 9 7 12 12 N 1.46843 * 109.52471 * 59.17591 * 11 10 9 13 13 C 1.46900 * 111.00568 * 174.16427 * 12 11 10 14 14 C 1.50693 * 109.47690 * 169.99917 * 13 12 11 15 15 C 1.35103 * 126.07989 * 259.96104 * 14 13 12 16 16 N 1.35024 * 107.97539 * 180.02562 * 15 14 13 17 17 H 0.96994 * 125.93324 * 179.97438 * 16 15 14 18 18 N 1.40069 * 108.14020 * 0.02562 * 16 15 14 19 19 C 1.31604 * 108.11557 * 359.97438 * 18 16 15 20 20 C 1.48458 * 126.03995 * 179.73306 * 19 18 16 21 21 C 1.39334 * 122.75700 * 324.76617 * 20 19 18 22 22 C 1.33089 * 114.90949 * 179.83071 * 21 20 19 23 23 S 1.75815 * 109.91077 * 0.41259 * 22 21 20 24 24 C 1.34511 * 122.75931 * 145.05179 * 20 19 18 25 25 C 1.46851 * 111.19861 * 298.26318 * 12 11 10 26 26 C 1.53039 * 109.52403 * 61.74321 * 25 12 11 27 27 H 0.96993 * 120.00054 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.52505 * 300.12193 * 9 7 2 29 29 H 1.09000 * 109.50483 * 62.43440 * 10 9 7 30 30 H 1.09004 * 109.53503 * 302.34250 * 10 9 7 31 31 H 1.09004 * 109.45620 * 299.16340 * 11 10 9 32 32 H 1.08996 * 109.45857 * 179.18859 * 11 10 9 33 33 H 1.09001 * 109.46606 * 49.99701 * 13 12 11 34 34 H 1.08996 * 109.46778 * 290.00736 * 13 12 11 35 35 H 1.08000 * 126.01531 * 0.03736 * 15 14 13 36 36 H 1.07996 * 122.54937 * 0.03179 * 21 20 19 37 37 H 1.08000 * 125.04306 * 180.17873 * 22 21 20 38 38 H 1.07999 * 125.22233 * 359.96783 * 24 20 19 39 39 H 1.08997 * 109.46400 * 181.75404 * 25 12 11 40 40 H 1.08993 * 109.46635 * 301.72259 * 25 12 11 41 41 H 1.08998 * 109.50443 * 180.88314 * 26 25 12 42 42 H 1.09001 * 109.53860 * 60.77728 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2450 -3.6639 0.0005 11 6 1.4752 -4.9852 -0.0594 12 7 0.6534 -5.0196 -1.2758 13 6 0.0069 -6.3288 -1.4378 14 6 -1.0110 -6.2528 -2.5463 15 6 -2.3458 -6.1118 -2.3926 16 7 -2.9063 -6.0865 -3.6207 17 1 -3.8527 -5.9948 -3.8127 18 7 -1.8841 -6.2169 -4.5694 19 6 -0.7400 -6.3173 -3.9270 20 6 0.5992 -6.4771 -4.5476 21 6 0.8077 -7.2150 -5.7110 22 6 2.0695 -7.2521 -6.1326 23 16 3.0941 -6.3349 -5.0371 24 6 1.7117 -5.9261 -4.0300 25 6 -0.3404 -3.9384 -1.2760 26 6 0.3753 -2.5859 -1.2525 27 1 -0.4850 0.8400 -0.0004 28 1 0.6221 -2.5567 0.8889 29 1 2.8429 -3.6321 0.9113 30 1 2.8996 -3.5845 -0.8674 31 1 0.8316 -5.0705 0.8162 32 1 2.1805 -5.8160 -0.0741 33 1 -0.4888 -6.6066 -0.5076 34 1 0.7594 -7.0772 -1.6859 35 1 -2.8719 -6.0330 -1.4527 36 1 0.0058 -7.7159 -6.2329 37 1 2.4136 -7.7720 -7.0145 38 1 1.7501 -5.3251 -3.1335 39 1 -0.9538 -4.0091 -2.1743 40 1 -0.9755 -4.0286 -0.3948 41 1 -0.3627 -1.7839 -1.2368 42 1 0.9999 -2.4885 -2.1405 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527105200.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:59 Heat of formation + Delta-G solvation = 92.400582 kcal Electronic energy + Delta-G solvation = -24504.419786 eV Core-core repulsion = 21190.719383 eV Total energy + Delta-G solvation = -3313.700403 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.27793 -39.61605 -38.54576 -35.90397 -33.72841 -32.55337 -31.48455 -31.05465 -29.98867 -27.99833 -25.80639 -25.19504 -23.64460 -23.02423 -22.68016 -20.85650 -20.33921 -19.30464 -18.57307 -18.38292 -18.18084 -16.89818 -16.34721 -16.11744 -15.69825 -15.42305 -15.29810 -14.80117 -14.64272 -14.32682 -14.08505 -13.90684 -13.70368 -13.46660 -13.29581 -13.20310 -12.99462 -12.82042 -12.72219 -12.47405 -12.30259 -11.96481 -11.79063 -11.70990 -11.54640 -11.29329 -10.76975 -10.74203 -10.60536 -10.33107 -9.61013 -9.54309 -9.10475 -8.95092 -8.05290 -6.17651 0.08506 0.81164 0.90336 1.14661 1.39988 1.41850 1.43037 1.50135 2.04766 2.29375 2.45378 3.21395 3.28241 3.70866 3.89252 4.19199 4.28036 4.32934 4.40015 4.45394 4.51450 4.57880 4.65269 4.73503 4.82466 4.88821 4.97106 5.00836 5.06426 5.11810 5.13174 5.22499 5.31164 5.40481 5.50470 5.60074 5.63086 5.64286 5.67497 6.06110 6.09414 6.37310 6.43827 6.45345 6.45470 6.70927 6.94505 7.49711 8.98706 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.013462 B = 0.004137 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.435044 B = 6766.349140 C = 7679.832808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.013 3.987 3 Si 0.948 3.052 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.532 4.532 8 H 0.050 0.950 9 C 0.047 3.953 10 C -0.099 4.099 11 C 0.066 3.934 12 N -0.534 5.534 13 C 0.134 3.866 14 C -0.236 4.236 15 C 0.076 3.924 16 N -0.465 5.465 17 H 0.454 0.546 18 N -0.317 5.317 19 C 0.141 3.859 20 C -0.057 4.057 21 C -0.128 4.128 22 C -0.214 4.214 23 S 0.117 5.883 24 C -0.188 4.188 25 C 0.081 3.919 26 C -0.093 4.093 27 H 0.258 0.742 28 H -0.010 1.010 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.027 0.973 32 H 0.090 0.910 33 H 0.051 0.949 34 H 0.085 0.915 35 H 0.206 0.794 36 H 0.144 0.856 37 H 0.192 0.808 38 H 0.186 0.814 39 H 0.060 0.940 40 H 0.018 0.982 41 H 0.054 0.946 42 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.922 -17.770 -7.530 19.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.185 4.185 3 Si 0.774 3.226 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.570 4.570 8 H 0.068 0.932 9 C 0.028 3.972 10 C -0.137 4.137 11 C -0.062 4.062 12 N -0.259 5.259 13 C 0.006 3.994 14 C -0.248 4.248 15 C -0.073 4.073 16 N -0.174 5.174 17 H 0.301 0.699 18 N -0.142 5.142 19 C -0.027 4.027 20 C -0.071 4.071 21 C -0.158 4.158 22 C -0.349 4.349 23 S 0.380 5.620 24 C -0.326 4.326 25 C -0.047 4.047 26 C -0.132 4.132 27 H 0.067 0.933 28 H 0.008 0.992 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.045 0.955 32 H 0.108 0.892 33 H 0.069 0.931 34 H 0.103 0.897 35 H 0.223 0.777 36 H 0.162 0.838 37 H 0.209 0.791 38 H 0.203 0.797 39 H 0.078 0.922 40 H 0.036 0.964 41 H 0.073 0.927 42 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -0.794 -17.234 -9.010 19.463 hybrid contribution -2.017 1.039 1.395 2.664 sum -2.811 -16.195 -7.615 18.115 Atomic orbital electron populations 1.70008 1.07066 1.26885 1.51740 1.25694 0.95621 1.02142 0.95031 0.85772 0.78518 0.79573 0.78754 1.19939 1.21109 1.19599 1.21593 0.92970 0.92410 1.50004 0.93198 1.18637 0.93136 0.92524 0.92903 1.21536 0.97904 0.94112 1.00142 1.22064 0.96174 0.98128 0.89816 1.61933 1.23333 1.02867 1.37736 1.20342 0.94118 0.90763 0.94136 1.20060 0.94358 1.16535 0.93830 1.22791 0.93838 0.99311 0.91363 1.46157 1.09783 1.58022 1.03433 0.69936 1.77449 0.95587 1.26221 1.14931 1.20331 0.91393 0.98986 0.91944 1.16956 0.89918 1.02999 0.97249 1.20168 0.97737 1.01592 0.96292 1.25744 0.96163 1.07271 1.05752 1.84208 1.10723 1.48422 1.18607 1.26587 0.95001 1.05446 1.05570 1.21880 0.93025 0.91209 0.98548 1.21396 0.98976 0.94963 0.97820 0.93279 0.99201 0.92844 0.93187 0.95461 0.89178 0.93072 0.89710 0.77730 0.83828 0.79093 0.79746 0.92208 0.96427 0.92701 0.95922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.52 11.37 21.45 0.24 -53.28 16 2 C 0.01 0.75 5.31 84.66 0.45 1.20 16 3 Si 0.95 44.30 29.54 68.60 2.03 46.33 16 4 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 7 C -0.53 -29.64 8.57 25.60 0.22 -29.42 16 8 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 9 C 0.05 2.33 2.16 -11.46 -0.02 2.30 16 10 C -0.10 -3.99 5.32 30.65 0.16 -3.83 16 11 C 0.07 2.11 5.42 86.32 0.47 2.58 16 12 N -0.53 -17.13 2.71 -900.96 -2.44 -19.57 16 13 C 0.13 3.49 4.75 85.55 0.41 3.89 16 14 C -0.24 -6.30 3.82 -19.95 -0.08 -6.37 16 15 C 0.08 1.64 11.03 83.48 0.92 2.56 16 16 N -0.46 -10.08 7.35 -57.67 -0.42 -10.50 16 17 H 0.45 6.47 8.96 -213.35 -1.91 4.56 16 18 N -0.32 -9.21 12.74 -48.14 -0.61 -9.82 16 19 C 0.14 4.18 6.86 42.54 0.29 4.47 16 20 C -0.06 -1.64 5.71 -21.14 -0.12 -1.77 16 21 C -0.13 -3.13 10.01 21.38 0.21 -2.92 16 22 C -0.21 -4.41 11.19 66.66 0.75 -3.67 16 23 S 0.12 2.72 23.32 -56.49 -1.32 1.41 16 24 C -0.19 -5.45 10.01 66.97 0.67 -4.78 16 25 C 0.08 3.08 4.93 86.33 0.43 3.51 16 26 C -0.09 -4.49 5.12 30.65 0.16 -4.33 16 27 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 28 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 29 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 31 H 0.03 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.09 2.38 8.12 -2.39 -0.02 2.36 16 33 H 0.05 1.18 8.07 -2.39 -0.02 1.16 16 34 H 0.08 2.10 7.83 -2.39 -0.02 2.08 16 35 H 0.21 3.00 8.06 -2.91 -0.02 2.98 16 36 H 0.14 3.25 8.06 -2.91 -0.02 3.22 16 37 H 0.19 2.65 8.06 -2.91 -0.02 2.63 16 38 H 0.19 6.01 5.46 -2.91 -0.02 5.99 16 39 H 0.06 2.26 6.03 -2.39 -0.01 2.24 16 40 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.05 3.01 6.17 -2.39 -0.01 3.00 16 42 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -66.61 348.28 1.51 -65.09 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -0.87 Total: 16.91 kcal Atomic # 6 Polarization: -41.47 SS G_CDS: 4.91 Total: -36.56 kcal Atomic # 7 Polarization: -89.94 SS G_CDS: -3.23 Total: -93.17 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: 2.72 SS G_CDS: -1.32 Total: 1.41 kcal Total: -66.61 1.51 -65.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527105200.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.493 kcal (2) G-P(sol) polarization free energy of solvation -66.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds