Wall clock time and date at job start Tue Mar 31 2020 11:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37989 * 120.06964 * 2 1 4 4 C 1.38335 * 120.14289 * 179.77071 * 3 2 1 5 5 C 1.38375 * 120.28107 * 0.50516 * 4 3 2 6 6 C 1.37948 * 120.14326 * 359.75135 * 5 4 3 7 7 C 1.39515 * 120.07524 * 180.27651 * 2 1 3 8 8 C 1.47915 * 120.13794 * 0.02562 * 7 2 1 9 9 N 1.29411 * 120.78497 * 352.85897 * 8 7 2 10 10 C 1.34349 * 116.98302 * 180.02562 * 9 8 7 11 11 N 1.31831 * 127.71562 * 180.02562 * 10 9 8 12 12 C 1.46497 * 120.00104 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47054 * 119.99882 * 12 11 10 14 14 C 1.53001 * 109.47072 * 299.99854 * 13 12 11 15 15 C 1.52992 * 109.47542 * 59.99848 * 13 12 11 16 16 C 1.50703 * 109.47030 * 180.02562 * 13 12 11 17 17 H 1.07996 * 120.00337 * 359.97438 * 16 13 12 18 18 C 1.37880 * 119.99869 * 179.97438 * 16 13 12 19 19 N 1.31513 * 120.00065 * 359.97438 * 18 16 13 20 20 Si 1.86797 * 119.99766 * 179.97438 * 18 16 13 21 21 H 1.48498 * 109.47512 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47409 * 120.00079 * 20 18 16 23 23 H 1.48503 * 109.46819 * 239.99859 * 20 18 16 24 24 S 1.77416 * 104.57243 * 359.97438 * 10 9 8 25 25 N 1.35210 * 120.78155 * 172.58308 * 8 7 2 26 26 H 0.96991 * 127.13236 * 359.97438 * 25 8 7 27 27 H 1.09001 * 109.46876 * 262.89538 * 1 2 3 28 28 H 1.09002 * 109.46769 * 142.89173 * 1 2 3 29 29 H 1.09003 * 109.47016 * 22.89329 * 1 2 3 30 30 H 1.07999 * 119.93277 * 0.02675 * 3 2 1 31 31 H 1.07991 * 119.85797 * 180.25573 * 4 3 2 32 32 H 1.07998 * 119.93024 * 179.76425 * 5 4 3 33 33 H 1.07997 * 120.07424 * 179.97438 * 6 5 4 34 34 H 1.08998 * 109.47271 * 239.99836 * 12 11 10 35 35 H 1.09002 * 109.46894 * 359.97438 * 12 11 10 36 36 H 1.08997 * 109.47263 * 60.00169 * 14 13 12 37 37 H 1.09006 * 109.47265 * 180.02562 * 14 13 12 38 38 H 1.09002 * 109.47288 * 300.00365 * 14 13 12 39 39 H 1.09003 * 109.47206 * 60.00070 * 15 13 12 40 40 H 1.08996 * 109.47378 * 179.97438 * 15 13 12 41 41 H 1.09001 * 109.47384 * 300.00570 * 15 13 12 42 42 H 0.96998 * 120.00161 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1942 0.0000 4 6 3.5818 1.1960 0.0048 5 6 4.2811 0.0019 -0.0009 6 6 3.6018 -1.1987 -0.0063 7 6 2.2062 -1.2073 -0.0058 8 6 1.4714 -2.4910 -0.0126 9 7 0.1849 -2.5185 0.1250 10 6 -0.4042 -3.7258 0.1081 11 7 -1.6885 -3.9982 0.2286 12 6 -2.1497 -5.3881 0.1852 13 6 -2.8565 -5.7321 1.4978 14 6 -1.8818 -5.5544 2.6637 15 6 -4.0562 -4.8024 1.6899 16 6 -3.3304 -7.1620 1.4533 17 1 -3.1463 -7.7649 0.5765 18 6 -3.9990 -7.7004 2.5322 19 7 -4.2228 -6.9664 3.6003 20 14 -4.5871 -9.4726 2.4769 21 1 -4.2139 -10.0775 1.1730 22 1 -3.9522 -10.2395 3.5787 23 1 -6.0632 -9.5094 2.6347 24 16 0.9320 -4.8716 -0.1141 25 7 2.1274 -3.6630 -0.1682 26 1 3.0821 -3.7886 -0.2848 27 1 -0.3633 -0.1271 1.0198 28 1 -0.3633 -0.8196 -0.6200 29 1 -0.3633 0.9467 -0.3998 30 1 1.6585 2.1295 0.0004 31 1 4.1182 2.1332 0.0089 32 1 5.3610 0.0099 -0.0010 33 1 4.1487 -2.1299 -0.0112 34 1 -2.8441 -5.5147 -0.6454 35 1 -1.2949 -6.0504 0.0479 36 1 -1.5386 -4.5203 2.6960 37 1 -2.3852 -5.7999 3.5988 38 1 -1.0270 -6.2167 2.5268 39 1 -4.7507 -4.9290 0.8593 40 1 -4.5600 -5.0478 2.6248 41 1 -3.7131 -3.7683 1.7222 42 1 -4.6929 -7.3453 4.3594 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528034095.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:06 Heat of formation + Delta-G solvation = 93.893727 kcal Electronic energy + Delta-G solvation = -23615.027515 eV Core-core repulsion = 20301.391860 eV Total energy + Delta-G solvation = -3313.635655 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.60420 -38.68653 -36.70390 -34.30248 -33.26785 -32.08325 -31.29099 -30.46389 -27.19289 -26.03627 -25.46705 -25.12992 -23.95510 -22.06087 -21.17436 -20.69715 -19.07536 -18.17779 -17.49547 -16.27825 -15.85133 -15.58379 -15.44686 -15.19846 -14.68701 -14.47978 -13.96049 -13.67155 -13.37152 -13.21844 -12.84765 -12.41114 -12.23737 -12.15499 -12.05958 -11.61055 -11.38380 -11.31123 -11.17346 -11.02553 -10.70261 -10.59946 -10.24468 -10.11080 -10.08802 -9.87072 -9.40210 -9.31766 -9.05102 -8.78353 -8.65801 -8.35444 -8.26716 -7.11028 -5.91585 -4.03324 0.34479 0.88857 1.05100 1.64368 1.90356 3.13381 3.31124 3.39196 3.42607 3.51939 3.59014 4.29553 4.42938 4.45581 4.51898 4.66093 4.74093 5.03040 5.13450 5.33640 5.41919 5.59844 5.66554 5.81304 5.97192 6.03771 6.10326 6.15670 6.32669 6.41269 6.46985 6.60652 6.62994 6.80671 6.92537 7.12088 7.21120 7.38835 7.49798 7.59484 7.75442 7.79722 8.16059 8.24267 8.33661 8.52167 8.97270 9.61678 11.08845 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.028644 B = 0.002957 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.280472 B = 9466.576989 C = 9961.573785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.015 4.015 3 C -0.129 4.129 4 C -0.092 4.092 5 C -0.134 4.134 6 C -0.085 4.085 7 C -0.061 4.061 8 C 0.434 3.566 9 N -0.508 5.508 10 C 0.324 3.676 11 N -0.448 5.448 12 C 0.067 3.933 13 C 0.078 3.922 14 C -0.129 4.129 15 C -0.123 4.123 16 C -0.509 4.509 17 H 0.055 0.945 18 C 0.067 3.933 19 N -0.883 5.883 20 Si 0.891 3.109 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.284 1.284 24 S 0.065 5.935 25 N -0.698 5.698 26 H 0.439 0.561 27 H 0.082 0.918 28 H 0.105 0.895 29 H 0.055 0.945 30 H 0.131 0.869 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.122 0.878 34 H 0.082 0.918 35 H 0.035 0.965 36 H 0.010 0.990 37 H 0.084 0.916 38 H 0.019 0.981 39 H 0.021 0.979 40 H 0.078 0.922 41 H 0.020 0.980 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.085 14.617 -7.818 24.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.018 4.018 3 C -0.147 4.147 4 C -0.111 4.111 5 C -0.152 4.152 6 C -0.106 4.106 7 C -0.066 4.066 8 C 0.154 3.846 9 N -0.239 5.239 10 C -0.067 4.067 11 N -0.171 5.171 12 C -0.063 4.063 13 C 0.077 3.923 14 C -0.187 4.187 15 C -0.181 4.181 16 C -0.548 4.548 17 H 0.073 0.927 18 C -0.135 4.135 19 N -0.521 5.521 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.210 1.210 24 S 0.186 5.814 25 N -0.430 5.430 26 H 0.283 0.717 27 H 0.100 0.900 28 H 0.123 0.877 29 H 0.074 0.926 30 H 0.149 0.851 31 H 0.145 0.855 32 H 0.146 0.854 33 H 0.140 0.860 34 H 0.100 0.900 35 H 0.053 0.947 36 H 0.029 0.971 37 H 0.102 0.898 38 H 0.039 0.961 39 H 0.040 0.960 40 H 0.097 0.903 41 H 0.039 0.961 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 16.612 14.189 -7.523 23.106 hybrid contribution 1.101 -1.167 -0.066 1.606 sum 17.713 13.022 -7.590 23.258 Atomic orbital electron populations 1.21217 0.89027 1.03009 1.04569 1.20192 0.97554 0.91069 0.92948 1.21113 0.94184 0.97636 1.01763 1.21356 0.94333 0.98289 0.97092 1.20985 1.00107 0.91932 1.02133 1.21085 0.92301 0.98746 0.98435 1.17946 0.92191 0.88830 1.07614 1.21286 0.86922 0.87417 0.88945 1.68244 1.04445 1.21215 1.29957 1.26269 0.92260 0.87304 1.00879 1.71998 1.05666 1.23038 1.16407 1.22708 0.98511 0.82546 1.02557 1.18132 0.91937 0.94780 0.87430 1.21794 0.97817 0.95922 1.03118 1.21691 0.98394 0.96023 1.02014 1.21097 1.36343 0.95899 1.01438 0.92683 1.24880 0.95700 0.97506 0.95383 1.69853 1.41519 1.35531 1.05220 0.86555 0.78437 0.85140 0.77957 1.19848 1.21103 1.21039 1.86215 1.00044 1.06421 1.88710 1.47180 1.12891 1.06753 1.76183 0.71700 0.89969 0.87683 0.92620 0.85133 0.85536 0.85377 0.85975 0.90012 0.94717 0.97132 0.89766 0.96136 0.95977 0.90286 0.96051 0.93123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.45 8.63 36.01 0.31 -1.14 16 2 C -0.01 -0.16 5.91 -104.24 -0.62 -0.78 16 3 C -0.13 -1.07 9.66 -39.64 -0.38 -1.46 16 4 C -0.09 -0.63 10.04 -39.50 -0.40 -1.03 16 5 C -0.13 -0.91 10.03 -39.64 -0.40 -1.31 16 6 C -0.09 -0.70 9.59 -39.20 -0.38 -1.07 16 7 C -0.06 -0.68 5.87 -104.97 -0.62 -1.29 16 8 C 0.43 5.96 7.37 -157.47 -1.16 4.79 16 9 N -0.51 -8.60 6.68 -11.68 -0.08 -8.68 16 10 C 0.32 6.24 8.59 -89.88 -0.77 5.47 16 11 N -0.45 -9.76 9.16 -61.13 -0.56 -10.32 16 12 C 0.07 1.53 5.21 -4.04 -0.02 1.51 16 13 C 0.08 2.00 0.57 -155.66 -0.09 1.92 16 14 C -0.13 -3.31 8.09 37.16 0.30 -3.01 16 15 C -0.12 -3.18 8.09 37.15 0.30 -2.88 16 16 C -0.51 -13.97 8.01 -34.44 -0.28 -14.24 16 17 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 18 C 0.07 1.83 5.15 -17.82 -0.09 1.74 16 19 N -0.88 -24.91 9.35 55.43 0.52 -24.39 16 20 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 S 0.07 1.06 22.40 -107.50 -2.41 -1.35 16 25 N -0.70 -8.50 6.62 31.55 0.21 -8.29 16 26 H 0.44 3.63 7.57 -40.82 -0.31 3.32 16 27 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.11 1.51 5.74 -51.93 -0.30 1.21 16 29 H 0.05 0.54 8.04 -51.93 -0.42 0.12 16 30 H 0.13 0.84 8.05 -52.49 -0.42 0.42 16 31 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 32 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 33 H 0.12 0.71 6.75 -52.49 -0.35 0.36 16 34 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 35 H 0.03 0.77 6.44 -51.93 -0.33 0.44 16 36 H 0.01 0.25 7.60 -51.93 -0.39 -0.15 16 37 H 0.08 2.34 6.07 -51.93 -0.31 2.03 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 41 H 0.02 0.52 7.60 -51.93 -0.39 0.12 16 42 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 350.57 15.07 5.28 5.28 Total: -1.00 -31.14 350.57 -11.97 -43.11 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -5.63 Total: 1.16 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -4.28 Total: -12.80 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: 0.09 Total: -51.69 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.41 Total: -1.35 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.14 -11.97 -43.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528034095.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.005 kcal (2) G-P(sol) polarization free energy of solvation -31.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds