Wall clock time and date at job start Tue Mar 31 2020 11:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37989 * 120.06964 * 2 1 4 4 C 1.38335 * 120.14289 * 179.77071 * 3 2 1 5 5 C 1.38375 * 120.28107 * 0.50516 * 4 3 2 6 6 C 1.37948 * 120.14326 * 359.75135 * 5 4 3 7 7 C 1.39515 * 120.07524 * 180.27651 * 2 1 3 8 8 C 1.47915 * 120.13794 * 0.02562 * 7 2 1 9 9 N 1.29411 * 120.78497 * 352.85897 * 8 7 2 10 10 C 1.34349 * 116.98302 * 180.02562 * 9 8 7 11 11 N 1.31831 * 127.71562 * 180.02562 * 10 9 8 12 12 C 1.46497 * 120.00104 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47054 * 119.99882 * 12 11 10 14 14 C 1.53001 * 109.47072 * 299.99854 * 13 12 11 15 15 C 1.52992 * 109.47542 * 59.99848 * 13 12 11 16 16 C 1.50703 * 109.47030 * 180.02562 * 13 12 11 17 17 H 1.07996 * 120.00337 * 359.97438 * 16 13 12 18 18 C 1.37880 * 119.99869 * 179.97438 * 16 13 12 19 19 N 1.31513 * 120.00065 * 359.97438 * 18 16 13 20 20 Si 1.86797 * 119.99766 * 179.97438 * 18 16 13 21 21 H 1.48498 * 109.47512 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47409 * 120.00079 * 20 18 16 23 23 H 1.48503 * 109.46819 * 239.99859 * 20 18 16 24 24 S 1.77416 * 104.57243 * 359.97438 * 10 9 8 25 25 N 1.35210 * 120.78155 * 172.58308 * 8 7 2 26 26 H 0.96991 * 127.13236 * 359.97438 * 25 8 7 27 27 H 1.09001 * 109.46876 * 262.89538 * 1 2 3 28 28 H 1.09002 * 109.46769 * 142.89173 * 1 2 3 29 29 H 1.09003 * 109.47016 * 22.89329 * 1 2 3 30 30 H 1.07999 * 119.93277 * 0.02675 * 3 2 1 31 31 H 1.07991 * 119.85797 * 180.25573 * 4 3 2 32 32 H 1.07998 * 119.93024 * 179.76425 * 5 4 3 33 33 H 1.07997 * 120.07424 * 179.97438 * 6 5 4 34 34 H 1.08998 * 109.47271 * 239.99836 * 12 11 10 35 35 H 1.09002 * 109.46894 * 359.97438 * 12 11 10 36 36 H 1.08997 * 109.47263 * 60.00169 * 14 13 12 37 37 H 1.09006 * 109.47265 * 180.02562 * 14 13 12 38 38 H 1.09002 * 109.47288 * 300.00365 * 14 13 12 39 39 H 1.09003 * 109.47206 * 60.00070 * 15 13 12 40 40 H 1.08996 * 109.47378 * 179.97438 * 15 13 12 41 41 H 1.09001 * 109.47384 * 300.00570 * 15 13 12 42 42 H 0.96998 * 120.00161 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1942 0.0000 4 6 3.5818 1.1960 0.0048 5 6 4.2811 0.0019 -0.0009 6 6 3.6018 -1.1987 -0.0063 7 6 2.2062 -1.2073 -0.0058 8 6 1.4714 -2.4910 -0.0126 9 7 0.1849 -2.5185 0.1250 10 6 -0.4042 -3.7258 0.1081 11 7 -1.6885 -3.9982 0.2286 12 6 -2.1497 -5.3881 0.1852 13 6 -2.8565 -5.7321 1.4978 14 6 -1.8818 -5.5544 2.6637 15 6 -4.0562 -4.8024 1.6899 16 6 -3.3304 -7.1620 1.4533 17 1 -3.1463 -7.7649 0.5765 18 6 -3.9990 -7.7004 2.5322 19 7 -4.2228 -6.9664 3.6003 20 14 -4.5871 -9.4726 2.4769 21 1 -4.2139 -10.0775 1.1730 22 1 -3.9522 -10.2395 3.5787 23 1 -6.0632 -9.5094 2.6347 24 16 0.9320 -4.8716 -0.1141 25 7 2.1274 -3.6630 -0.1682 26 1 3.0821 -3.7886 -0.2848 27 1 -0.3633 -0.1271 1.0198 28 1 -0.3633 -0.8196 -0.6200 29 1 -0.3633 0.9467 -0.3998 30 1 1.6585 2.1295 0.0004 31 1 4.1182 2.1332 0.0089 32 1 5.3610 0.0099 -0.0010 33 1 4.1487 -2.1299 -0.0112 34 1 -2.8441 -5.5147 -0.6454 35 1 -1.2949 -6.0504 0.0479 36 1 -1.5386 -4.5203 2.6960 37 1 -2.3852 -5.7999 3.5988 38 1 -1.0270 -6.2167 2.5268 39 1 -4.7507 -4.9290 0.8593 40 1 -4.5600 -5.0478 2.6248 41 1 -3.7131 -3.7683 1.7222 42 1 -4.6929 -7.3453 4.3594 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528034095.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:05 Heat of formation + Delta-G solvation = 77.558029 kcal Electronic energy + Delta-G solvation = -23615.735884 eV Core-core repulsion = 20301.391860 eV Total energy + Delta-G solvation = -3314.344024 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.60643 -39.57839 -38.50251 -35.86251 -34.24764 -33.50563 -32.18662 -32.04521 -28.05810 -27.67651 -27.45924 -27.08857 -25.19568 -22.80672 -22.26540 -21.91049 -20.64476 -19.66488 -18.57513 -17.96371 -17.07207 -16.80921 -16.58165 -16.34785 -16.16932 -15.77322 -15.18380 -14.88256 -14.53221 -14.45826 -14.20773 -13.99490 -13.48015 -13.45138 -13.17531 -13.02671 -12.99473 -12.80492 -12.55544 -12.47165 -12.26133 -12.19595 -12.11543 -12.00929 -11.54218 -11.48191 -11.12020 -10.93303 -10.71604 -10.39874 -9.85930 -9.76105 -9.57756 -8.53361 -7.99499 -6.19180 -0.58974 -0.32967 0.42219 0.48306 0.61574 1.42198 1.44400 1.55193 1.93557 2.36287 2.48260 2.82453 3.21265 3.22211 3.48774 3.86473 3.91476 4.17101 4.26780 4.42640 4.45862 4.54433 4.66693 4.69923 4.78676 4.83918 4.87177 4.98210 5.03948 5.08576 5.14335 5.31949 5.39355 5.42929 5.49533 5.52816 5.62020 5.64964 5.65612 5.81810 5.98394 6.05386 6.20230 6.28595 6.41584 6.83505 6.93731 7.48736 8.99207 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.028644 B = 0.002957 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.280472 B = 9466.576989 C = 9961.573785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.033 4.033 3 C -0.134 4.134 4 C -0.080 4.080 5 C -0.129 4.129 6 C -0.081 4.081 7 C -0.089 4.089 8 C 0.447 3.553 9 N -0.541 5.541 10 C 0.330 3.670 11 N -0.501 5.501 12 C 0.083 3.917 13 C 0.070 3.930 14 C -0.109 4.109 15 C -0.109 4.109 16 C -0.527 4.527 17 H 0.053 0.947 18 C 0.022 3.978 19 N -0.906 5.906 20 Si 0.953 3.047 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.281 1.281 24 S 0.064 5.936 25 N -0.672 5.672 26 H 0.459 0.541 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.148 0.852 31 H 0.160 0.840 32 H 0.162 0.838 33 H 0.146 0.854 34 H 0.074 0.926 35 H 0.033 0.967 36 H 0.008 0.992 37 H 0.060 0.940 38 H 0.018 0.982 39 H 0.019 0.981 40 H 0.056 0.944 41 H 0.021 0.979 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.589 15.797 -8.562 28.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.036 4.036 3 C -0.152 4.152 4 C -0.099 4.099 5 C -0.147 4.147 6 C -0.101 4.101 7 C -0.094 4.094 8 C 0.169 3.831 9 N -0.274 5.274 10 C -0.060 4.060 11 N -0.227 5.227 12 C -0.048 4.048 13 C 0.069 3.931 14 C -0.167 4.167 15 C -0.167 4.167 16 C -0.566 4.566 17 H 0.071 0.929 18 C -0.177 4.177 19 N -0.545 5.545 20 Si 0.779 3.221 21 H -0.193 1.193 22 H -0.207 1.207 23 H -0.207 1.207 24 S 0.186 5.814 25 N -0.406 5.406 26 H 0.308 0.692 27 H 0.079 0.921 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.165 0.835 31 H 0.177 0.823 32 H 0.180 0.820 33 H 0.164 0.836 34 H 0.092 0.908 35 H 0.052 0.948 36 H 0.027 0.973 37 H 0.079 0.921 38 H 0.037 0.963 39 H 0.038 0.962 40 H 0.075 0.925 41 H 0.040 0.960 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 20.203 15.358 -8.284 26.695 hybrid contribution 0.334 -1.305 0.126 1.353 sum 20.536 14.053 -8.159 26.187 Atomic orbital electron populations 1.21048 0.90629 1.02835 1.02772 1.20224 0.96749 0.92238 0.94386 1.21351 0.95217 0.97235 1.01369 1.21814 0.93702 0.99910 0.94443 1.21438 1.01814 0.91131 1.00284 1.21404 0.90886 1.00716 0.97132 1.18071 0.93442 0.87304 1.10627 1.21813 0.86307 0.88683 0.86311 1.68332 1.06013 1.20149 1.32909 1.26597 0.92546 0.88671 0.98169 1.71969 1.07382 1.21747 1.21568 1.22293 0.98098 0.83873 1.00505 1.18135 0.91931 0.94020 0.89042 1.21555 0.97422 0.95573 1.02115 1.21509 0.98417 0.96179 1.00562 1.21369 1.36793 0.96899 1.01526 0.92922 1.25609 0.95784 1.01275 0.95037 1.69986 1.41810 1.37023 1.05641 0.85579 0.77861 0.80547 0.78070 1.19260 1.20711 1.20732 1.86152 1.00324 1.06992 1.87886 1.47157 1.13348 1.05162 1.74955 0.69212 0.92130 0.90391 0.90817 0.83454 0.82285 0.82040 0.83601 0.90797 0.94843 0.97255 0.92113 0.96326 0.96155 0.92515 0.95998 0.93095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.84 8.63 71.24 0.61 -2.23 16 2 C -0.03 -0.68 5.91 -19.61 -0.12 -0.79 16 3 C -0.13 -1.84 9.66 22.23 0.21 -1.62 16 4 C -0.08 -0.73 10.04 22.33 0.22 -0.50 16 5 C -0.13 -1.12 10.03 22.23 0.22 -0.90 16 6 C -0.08 -1.02 9.59 22.52 0.22 -0.81 16 7 C -0.09 -1.82 5.87 -20.09 -0.12 -1.94 16 8 C 0.45 11.92 7.37 137.54 1.01 12.93 16 9 N -0.54 -18.77 6.68 -190.88 -1.28 -20.05 16 10 C 0.33 13.10 8.59 180.09 1.55 14.65 16 11 N -0.50 -22.79 9.16 -347.33 -3.18 -25.97 16 12 C 0.08 3.94 5.21 86.38 0.45 4.39 16 13 C 0.07 3.70 0.57 -52.93 -0.03 3.67 16 14 C -0.11 -5.79 8.09 71.98 0.58 -5.21 16 15 C -0.11 -5.85 8.09 71.98 0.58 -5.27 16 16 C -0.53 -29.58 8.01 25.60 0.21 -29.37 16 17 H 0.05 2.91 7.74 -2.91 -0.02 2.88 16 18 C 0.02 1.23 5.15 84.66 0.44 1.67 16 19 N -0.91 -52.31 9.35 21.45 0.20 -52.11 16 20 Si 0.95 44.12 29.54 68.60 2.03 46.15 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 23 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 24 S 0.06 2.06 22.40 -56.49 -1.27 0.80 16 25 N -0.67 -15.21 6.62 -54.11 -0.36 -15.57 16 26 H 0.46 6.22 7.57 -92.72 -0.70 5.52 16 27 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 28 H 0.08 2.36 5.74 -2.39 -0.01 2.35 16 29 H 0.07 1.43 8.04 -2.39 -0.02 1.41 16 30 H 0.15 1.46 8.05 -2.91 -0.02 1.43 16 31 H 0.16 0.46 8.06 -2.92 -0.02 0.44 16 32 H 0.16 0.39 8.06 -2.91 -0.02 0.37 16 33 H 0.15 1.03 6.75 -2.91 -0.02 1.01 16 34 H 0.07 3.47 8.14 -2.39 -0.02 3.45 16 35 H 0.03 1.54 6.44 -2.39 -0.02 1.52 16 36 H 0.01 0.45 7.60 -2.39 -0.02 0.43 16 37 H 0.06 3.50 6.07 -2.38 -0.01 3.48 16 38 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.06 3.27 6.07 -2.39 -0.01 3.26 16 41 H 0.02 1.12 7.60 -2.39 -0.02 1.10 16 42 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -70.43 350.57 2.53 -67.90 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 0.34 Total: 10.20 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: 6.04 Total: -11.34 kcal Atomic # 7 Polarization: -109.09 SS G_CDS: -4.62 Total: -113.70 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -1.27 Total: 0.80 kcal Total: -70.43 2.53 -67.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528034095.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.457 kcal (2) G-P(sol) polarization free energy of solvation -70.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds