Wall clock time and date at job start Tue Mar 31 2020 11:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86794 * 120.00086 * 2 1 4 4 H 1.48497 * 109.47100 * 274.65885 * 3 2 1 5 5 H 1.48496 * 109.47243 * 34.66276 * 3 2 1 6 6 H 1.48503 * 109.47035 * 154.66166 * 3 2 1 7 7 C 1.39891 * 119.99725 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00127 * 162.15482 * 7 2 1 9 9 C 1.41218 * 120.00130 * 342.14916 * 7 2 1 10 10 C 1.40840 * 120.17921 * 155.14523 * 9 7 2 11 11 C 1.36434 * 119.81376 * 180.02562 * 10 9 7 12 12 C 1.39317 * 120.18143 * 0.02562 * 11 10 9 13 13 O 1.35679 * 119.81442 * 179.97438 * 12 11 10 14 14 C 1.42896 * 116.99582 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.46983 * 179.97438 * 14 13 12 16 16 H 1.09002 * 109.47121 * 305.00758 * 15 14 13 17 17 O 1.42909 * 109.46988 * 65.00486 * 15 14 13 18 18 C 1.52996 * 109.47536 * 185.00240 * 15 14 13 19 19 N 1.46899 * 109.47333 * 180.02562 * 18 15 14 20 20 C 1.46901 * 110.99810 * 180.02562 * 19 18 15 21 21 C 1.50699 * 109.46835 * 179.97438 * 20 19 18 22 22 C 1.34519 * 125.79066 * 89.71965 * 21 20 19 23 23 C 1.41382 * 106.84471 * 179.88686 * 22 21 20 24 24 C 1.34516 * 106.83524 * 0.37186 * 23 22 21 25 25 O 1.34301 * 108.42685 * 359.77172 * 24 23 22 26 26 C 1.39309 * 120.36692 * 0.25152 * 12 11 10 27 27 C 1.36439 * 120.18617 * 359.48369 * 26 12 11 28 28 H 0.96998 * 119.99986 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.09375 * 0.02562 * 10 9 7 30 30 H 1.07993 * 119.90727 * 179.97438 * 11 10 9 31 31 H 1.08998 * 109.47395 * 60.00681 * 14 13 12 32 32 H 1.08998 * 109.47852 * 299.99834 * 14 13 12 33 33 H 0.96697 * 114.00004 * 59.99391 * 17 15 14 34 34 H 1.09004 * 109.47299 * 60.00309 * 18 15 14 35 35 H 1.09002 * 109.47339 * 300.00385 * 18 15 14 36 36 H 1.00899 * 111.00016 * 303.95189 * 19 18 15 37 37 H 1.08999 * 109.47394 * 299.99525 * 20 19 18 38 38 H 1.09002 * 109.47161 * 60.00038 * 20 19 18 39 39 H 1.08001 * 126.57670 * 0.02562 * 22 21 20 40 40 H 1.07993 * 126.57813 * 180.15792 * 23 22 21 41 41 H 1.08007 * 125.78383 * 179.74804 * 24 23 22 42 42 H 1.08007 * 119.90729 * 179.72797 * 26 12 11 43 43 H 1.07995 * 120.10155 * 180.25708 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3918 2.1032 -1.3954 5 1 1.4931 2.6221 0.7963 6 1 3.5862 1.4136 0.5992 7 6 2.0082 -1.2115 -0.0005 8 1 3.0493 -1.2340 -0.2872 9 6 1.3531 -2.4052 0.3738 10 6 1.8224 -3.6475 -0.0952 11 6 1.1835 -4.7961 0.2707 12 6 0.0694 -4.7424 1.1055 13 8 -0.5606 -5.8892 1.4643 14 6 -1.6962 -5.7642 2.3226 15 6 -2.2696 -7.1522 2.6152 16 1 -2.4884 -7.6603 1.6759 17 8 -1.3162 -7.9145 3.3583 18 6 -3.5565 -7.0110 3.4305 19 7 -4.1067 -8.3437 3.7119 20 6 -5.3461 -8.2470 4.4945 21 6 -5.8801 -9.6305 4.7625 22 6 -5.5751 -10.3997 5.8231 23 6 -6.2965 -11.6065 5.6749 24 6 -6.9928 -11.5060 4.5284 25 8 -6.7367 -10.3071 3.9800 26 6 -0.4047 -3.5173 1.5692 27 6 0.2259 -2.3598 1.2170 28 1 -0.4850 0.8400 0.0004 29 1 2.6857 -3.6908 -0.7428 30 1 1.5419 -5.7495 -0.0884 31 1 -2.4555 -5.1535 1.8341 32 1 -1.3951 -5.2908 3.2571 33 1 -1.0740 -7.5209 4.2077 34 1 -4.2838 -6.4296 2.8638 35 1 -3.3377 -6.5029 4.3697 36 1 -4.2578 -8.8601 2.8583 37 1 -5.1402 -7.7471 5.4409 38 1 -6.0857 -7.6747 3.9345 39 1 -4.9089 -10.1435 6.6336 40 1 -6.2874 -12.4489 6.3507 41 1 -7.6466 -12.2615 4.1182 42 1 -1.2717 -3.4839 2.2124 43 1 -0.1403 -1.4111 1.5806 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000560369050.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:52 Heat of formation + Delta-G solvation = -51.385721 kcal Electronic energy + Delta-G solvation = -24584.662607 eV Core-core repulsion = 20789.681540 eV Total energy + Delta-G solvation = -3794.981067 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.81730 -39.10718 -37.86330 -36.31440 -35.50240 -33.34614 -33.24930 -31.45164 -29.85313 -29.59287 -28.79805 -26.27958 -24.78558 -23.74093 -22.11092 -21.97847 -20.98039 -20.68841 -20.34028 -17.83875 -17.36591 -17.04612 -16.74008 -16.49525 -16.14839 -15.44553 -15.29158 -15.07657 -14.81882 -14.16024 -14.06160 -13.93051 -13.42826 -13.11794 -13.05138 -12.84391 -12.68009 -12.53582 -12.40595 -12.04182 -11.99198 -11.74397 -11.43938 -11.13024 -11.03752 -10.83634 -10.58987 -10.19392 -10.02524 -9.87357 -9.80166 -9.37490 -9.02501 -8.93889 -8.68195 -7.66740 -7.02026 -6.74316 -4.26248 1.40530 2.33929 2.67331 2.75616 2.95400 3.07059 3.11376 3.20571 3.57711 3.94107 4.21294 4.33106 4.49960 4.60706 4.68651 4.76017 4.86201 4.91887 5.01522 5.10772 5.20824 5.27558 5.41459 5.52143 5.63617 5.66611 5.67242 5.79863 6.00803 6.08760 6.21662 6.27653 6.48427 6.70840 6.82949 6.88178 6.94911 7.05666 7.26783 7.39887 7.54920 7.75815 7.89206 7.99182 8.14410 8.43529 8.63961 8.89077 8.98159 10.20610 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.034085 B = 0.001823 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.282588 B =15357.103947 C =15844.911776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.075 3.925 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.087 3.913 10 C -0.195 4.195 11 C -0.112 4.112 12 C -0.010 4.010 13 O -0.318 6.318 14 C 0.039 3.961 15 C 0.115 3.885 16 H 0.103 0.897 17 O -0.540 6.540 18 C 0.029 3.971 19 N -0.674 5.674 20 C 0.140 3.860 21 C -0.015 4.015 22 C -0.187 4.187 23 C -0.216 4.216 24 C -0.041 4.041 25 O -0.179 6.179 26 C -0.175 4.175 27 C -0.134 4.134 28 H 0.279 0.721 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.371 0.629 34 H 0.046 0.954 35 H 0.082 0.918 36 H 0.348 0.652 37 H 0.103 0.897 38 H 0.048 0.952 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.202 0.798 42 H 0.093 0.907 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.434 -14.512 10.250 22.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.084 3.916 10 C -0.215 4.215 11 C -0.131 4.131 12 C -0.053 4.053 13 O -0.234 6.234 14 C -0.039 4.039 15 C 0.055 3.945 16 H 0.121 0.879 17 O -0.344 6.344 18 C -0.100 4.100 19 N -0.306 5.306 20 C 0.012 3.988 21 C -0.066 4.066 22 C -0.207 4.207 23 C -0.235 4.235 24 C -0.109 4.109 25 O -0.075 6.075 26 C -0.193 4.193 27 C -0.154 4.154 28 H 0.090 0.910 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.218 0.782 34 H 0.064 0.936 35 H 0.100 0.900 36 H 0.166 0.834 37 H 0.121 0.879 38 H 0.066 0.934 39 H 0.166 0.834 40 H 0.165 0.835 41 H 0.218 0.782 42 H 0.111 0.889 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -13.347 -14.899 9.937 22.335 hybrid contribution -0.511 1.566 0.037 1.647 sum -13.857 -13.334 9.974 21.663 Atomic orbital electron populations 1.69841 1.07539 1.29016 1.36332 1.25875 0.94707 1.01232 0.92359 0.86334 0.80761 0.80822 0.79002 1.19640 1.20146 1.18464 1.19468 0.98099 0.91207 1.40519 0.90482 1.17606 0.91874 0.92196 0.89884 1.20611 1.03204 0.92240 1.05443 1.19625 0.95587 0.97711 1.00162 1.18599 0.97700 0.83818 1.05206 1.85864 1.42168 1.30649 1.64685 1.23095 0.89252 0.96913 0.94591 1.21826 0.86640 0.91050 0.94963 0.87895 1.86634 1.61805 1.50573 1.35353 1.22609 0.96625 0.90094 1.00720 1.60392 1.27526 1.16838 1.25851 1.20328 0.90186 0.88040 1.00274 1.22248 0.95728 0.96266 0.92316 1.21607 1.03780 0.94425 1.00884 1.21876 1.01770 1.00192 0.99671 1.24032 1.04007 0.87047 0.95770 1.84006 1.51627 1.25956 1.45960 1.20590 1.01344 0.92946 1.04466 1.20927 0.98514 0.96440 0.99503 0.91039 0.88180 0.88452 0.92430 0.92769 0.78190 0.93590 0.89956 0.83359 0.87899 0.93403 0.83361 0.83459 0.78165 0.88922 0.86181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.65 10.97 55.54 0.61 -20.05 16 2 C 0.07 1.87 5.13 -17.34 -0.09 1.79 16 3 Si 0.91 18.61 29.59 -169.99 -5.03 13.58 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.46 -12.28 9.04 -37.83 -0.34 -12.62 16 8 H 0.08 1.96 7.91 -52.48 -0.41 1.55 16 9 C 0.09 2.32 5.57 -106.80 -0.60 1.72 16 10 C -0.20 -4.84 9.74 -39.25 -0.38 -5.23 16 11 C -0.11 -2.64 9.92 -39.83 -0.40 -3.03 16 12 C -0.01 -0.23 6.71 -38.78 -0.26 -0.49 16 13 O -0.32 -6.48 10.09 -23.59 -0.24 -6.72 16 14 C 0.04 0.59 4.36 37.16 0.16 0.75 16 15 C 0.12 1.42 3.45 -26.73 -0.09 1.33 16 16 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 17 O -0.54 -7.36 13.17 -40.08 -0.53 -7.89 16 18 C 0.03 0.27 5.35 -3.83 -0.02 0.25 16 19 N -0.67 -6.32 6.36 -115.06 -0.73 -7.05 16 20 C 0.14 1.14 6.22 -4.98 -0.03 1.11 16 21 C -0.02 -0.15 6.83 -35.62 -0.24 -0.39 16 22 C -0.19 -1.73 10.81 -39.70 -0.43 -2.15 16 23 C -0.22 -1.77 10.91 -39.70 -0.43 -2.20 16 24 C -0.04 -0.32 12.09 29.42 0.36 0.04 16 25 O -0.18 -1.79 10.65 5.70 0.06 -1.73 16 26 C -0.17 -4.06 8.96 -39.83 -0.36 -4.42 16 27 C -0.13 -3.47 8.64 -39.25 -0.34 -3.81 16 28 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 29 H 0.10 2.30 8.06 -52.48 -0.42 1.88 16 30 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 31 H 0.06 0.85 7.63 -51.93 -0.40 0.45 16 32 H 0.05 0.78 7.66 -51.93 -0.40 0.38 16 33 H 0.37 3.89 9.05 45.56 0.41 4.30 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.35 3.36 8.72 -39.29 -0.34 3.02 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.20 0.81 8.06 -52.48 -0.42 0.38 16 42 H 0.09 1.89 6.27 -52.48 -0.33 1.56 16 43 H 0.12 3.18 6.18 -52.49 -0.32 2.85 16 LS Contribution 368.60 15.07 5.55 5.55 Total: -1.00 -31.05 368.60 -8.95 -40.00 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -5.16 Total: 11.68 kcal Atomic # 6 Polarization: -23.88 SS G_CDS: -3.49 Total: -27.37 kcal Atomic # 7 Polarization: -26.97 SS G_CDS: -0.12 Total: -27.10 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -0.70 Total: -16.34 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.05 -8.95 -40.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000560369050.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.388 kcal (2) G-P(sol) polarization free energy of solvation -31.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds