Wall clock time and date at job start Tue Mar 31 2020 11:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86794 * 120.00086 * 2 1 4 4 H 1.48497 * 109.47100 * 274.65885 * 3 2 1 5 5 H 1.48496 * 109.47243 * 34.66276 * 3 2 1 6 6 H 1.48503 * 109.47035 * 154.66166 * 3 2 1 7 7 C 1.39891 * 119.99725 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00127 * 162.15482 * 7 2 1 9 9 C 1.41218 * 120.00130 * 342.14916 * 7 2 1 10 10 C 1.40840 * 120.17921 * 155.14523 * 9 7 2 11 11 C 1.36434 * 119.81376 * 180.02562 * 10 9 7 12 12 C 1.39317 * 120.18143 * 0.02562 * 11 10 9 13 13 O 1.35679 * 119.81442 * 179.97438 * 12 11 10 14 14 C 1.42896 * 116.99582 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.46983 * 179.97438 * 14 13 12 16 16 H 1.09002 * 109.47121 * 305.00758 * 15 14 13 17 17 O 1.42909 * 109.46988 * 65.00486 * 15 14 13 18 18 C 1.52996 * 109.47536 * 185.00240 * 15 14 13 19 19 N 1.46899 * 109.47333 * 180.02562 * 18 15 14 20 20 C 1.46901 * 110.99810 * 180.02562 * 19 18 15 21 21 C 1.50699 * 109.46835 * 179.97438 * 20 19 18 22 22 C 1.34519 * 125.79066 * 89.71965 * 21 20 19 23 23 C 1.41382 * 106.84471 * 179.88686 * 22 21 20 24 24 C 1.34516 * 106.83524 * 0.37186 * 23 22 21 25 25 O 1.34301 * 108.42685 * 359.77172 * 24 23 22 26 26 C 1.39309 * 120.36692 * 0.25152 * 12 11 10 27 27 C 1.36439 * 120.18617 * 359.48369 * 26 12 11 28 28 H 0.96998 * 119.99986 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.09375 * 0.02562 * 10 9 7 30 30 H 1.07993 * 119.90727 * 179.97438 * 11 10 9 31 31 H 1.08998 * 109.47395 * 60.00681 * 14 13 12 32 32 H 1.08998 * 109.47852 * 299.99834 * 14 13 12 33 33 H 0.96697 * 114.00004 * 59.99391 * 17 15 14 34 34 H 1.09004 * 109.47299 * 60.00309 * 18 15 14 35 35 H 1.09002 * 109.47339 * 300.00385 * 18 15 14 36 36 H 1.00899 * 111.00016 * 303.95189 * 19 18 15 37 37 H 1.08999 * 109.47394 * 299.99525 * 20 19 18 38 38 H 1.09002 * 109.47161 * 60.00038 * 20 19 18 39 39 H 1.08001 * 126.57670 * 0.02562 * 22 21 20 40 40 H 1.07993 * 126.57813 * 180.15792 * 23 22 21 41 41 H 1.08007 * 125.78383 * 179.74804 * 24 23 22 42 42 H 1.08007 * 119.90729 * 179.72797 * 26 12 11 43 43 H 1.07995 * 120.10155 * 180.25708 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3918 2.1032 -1.3954 5 1 1.4931 2.6221 0.7963 6 1 3.5862 1.4136 0.5992 7 6 2.0082 -1.2115 -0.0005 8 1 3.0493 -1.2340 -0.2872 9 6 1.3531 -2.4052 0.3738 10 6 1.8224 -3.6475 -0.0952 11 6 1.1835 -4.7961 0.2707 12 6 0.0694 -4.7424 1.1055 13 8 -0.5606 -5.8892 1.4643 14 6 -1.6962 -5.7642 2.3226 15 6 -2.2696 -7.1522 2.6152 16 1 -2.4884 -7.6603 1.6759 17 8 -1.3162 -7.9145 3.3583 18 6 -3.5565 -7.0110 3.4305 19 7 -4.1067 -8.3437 3.7119 20 6 -5.3461 -8.2470 4.4945 21 6 -5.8801 -9.6305 4.7625 22 6 -5.5751 -10.3997 5.8231 23 6 -6.2965 -11.6065 5.6749 24 6 -6.9928 -11.5060 4.5284 25 8 -6.7367 -10.3071 3.9800 26 6 -0.4047 -3.5173 1.5692 27 6 0.2259 -2.3598 1.2170 28 1 -0.4850 0.8400 0.0004 29 1 2.6857 -3.6908 -0.7428 30 1 1.5419 -5.7495 -0.0884 31 1 -2.4555 -5.1535 1.8341 32 1 -1.3951 -5.2908 3.2571 33 1 -1.0740 -7.5209 4.2077 34 1 -4.2838 -6.4296 2.8638 35 1 -3.3377 -6.5029 4.3697 36 1 -4.2578 -8.8601 2.8583 37 1 -5.1402 -7.7471 5.4409 38 1 -6.0857 -7.6747 3.9345 39 1 -4.9089 -10.1435 6.6336 40 1 -6.2874 -12.4489 6.3507 41 1 -7.6466 -12.2615 4.1182 42 1 -1.2717 -3.4839 2.2124 43 1 -0.1403 -1.4111 1.5806 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000560369050.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:52 Heat of formation + Delta-G solvation = -72.435620 kcal Electronic energy + Delta-G solvation = -24585.575399 eV Core-core repulsion = 20789.681540 eV Total energy + Delta-G solvation = -3795.893859 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.45065 -40.64846 -39.09273 -37.83746 -36.42614 -35.19878 -33.89617 -32.33871 -31.54069 -31.17889 -30.12270 -27.32132 -26.42067 -24.70292 -23.30650 -22.68518 -22.56388 -22.04629 -21.32878 -19.27146 -18.75787 -18.33818 -17.77904 -17.51613 -17.04140 -16.87621 -16.39618 -16.09511 -15.77725 -15.61587 -15.39025 -15.24304 -14.79984 -14.27080 -14.18309 -13.81840 -13.73135 -13.67703 -13.53938 -13.30376 -13.22015 -13.18931 -12.77660 -12.73080 -12.63187 -12.30522 -11.90485 -11.69510 -11.58345 -11.23005 -10.96195 -10.86379 -10.82638 -9.59874 -9.56910 -9.33591 -8.90652 -8.60393 -6.22513 0.76965 0.93770 1.04333 1.39962 1.49563 1.55853 1.71180 2.08677 2.23090 2.43283 2.72317 3.27539 3.55744 3.70398 3.74960 3.90847 3.99070 4.05635 4.16923 4.17784 4.29532 4.33007 4.39141 4.44519 4.49394 4.55124 4.64914 4.88573 4.93496 4.99464 5.04661 5.06239 5.15296 5.22365 5.36951 5.52304 5.62226 5.66112 5.81821 5.97053 6.06256 6.15675 6.23919 6.26179 6.56234 6.79172 6.89689 6.95235 7.10533 8.36665 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.034085 B = 0.001823 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.282588 B =15357.103947 C =15844.911776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.034 3.966 3 Si 0.981 3.019 4 H -0.264 1.264 5 H -0.266 1.266 6 H -0.260 1.260 7 C -0.500 4.500 8 H 0.075 0.925 9 C 0.053 3.947 10 C -0.205 4.205 11 C -0.124 4.124 12 C 0.000 4.000 13 O -0.330 6.330 14 C 0.030 3.970 15 C 0.125 3.875 16 H 0.094 0.906 17 O -0.559 6.559 18 C 0.040 3.960 19 N -0.682 5.682 20 C 0.144 3.856 21 C -0.034 4.034 22 C -0.201 4.201 23 C -0.231 4.231 24 C -0.042 4.042 25 O -0.197 6.197 26 C -0.175 4.175 27 C -0.154 4.154 28 H 0.287 0.713 29 H 0.108 0.892 30 H 0.117 0.883 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.384 0.616 34 H 0.057 0.943 35 H 0.097 0.903 36 H 0.344 0.656 37 H 0.116 0.884 38 H 0.054 0.946 39 H 0.155 0.845 40 H 0.166 0.834 41 H 0.234 0.766 42 H 0.121 0.879 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.360 -14.844 11.137 23.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.179 4.179 3 Si 0.802 3.198 4 H -0.189 1.189 5 H -0.190 1.190 6 H -0.183 1.183 7 C -0.530 4.530 8 H 0.093 0.907 9 C 0.051 3.949 10 C -0.225 4.225 11 C -0.142 4.142 12 C -0.044 4.044 13 O -0.245 6.245 14 C -0.046 4.046 15 C 0.065 3.935 16 H 0.112 0.888 17 O -0.365 6.365 18 C -0.089 4.089 19 N -0.314 5.314 20 C 0.015 3.985 21 C -0.083 4.083 22 C -0.221 4.221 23 C -0.250 4.250 24 C -0.110 4.110 25 O -0.094 6.094 26 C -0.193 4.193 27 C -0.174 4.174 28 H 0.098 0.902 29 H 0.127 0.873 30 H 0.135 0.865 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.233 0.767 34 H 0.075 0.925 35 H 0.115 0.885 36 H 0.162 0.838 37 H 0.134 0.866 38 H 0.072 0.928 39 H 0.173 0.827 40 H 0.183 0.817 41 H 0.250 0.750 42 H 0.139 0.861 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -14.286 -15.251 10.842 23.542 hybrid contribution -0.316 1.465 -0.187 1.510 sum -14.602 -13.786 10.655 22.733 Atomic orbital electron populations 1.69885 1.08907 1.30397 1.36655 1.26711 0.95500 1.04391 0.91335 0.85211 0.79194 0.76122 0.79288 1.18885 1.19044 1.18349 1.19713 0.98337 0.92431 1.42489 0.90690 1.17974 0.92898 0.93152 0.90911 1.20796 1.03708 0.92280 1.05680 1.19902 0.95897 0.98125 1.00325 1.18714 0.97223 0.84588 1.03912 1.85862 1.43687 1.29405 1.65580 1.23474 0.87744 0.99222 0.94175 1.21750 0.87557 0.88986 0.95217 0.88783 1.86601 1.62377 1.51207 1.36331 1.22474 0.95089 0.90374 1.00996 1.60384 1.28393 1.16797 1.25802 1.20373 0.89704 0.87668 1.00712 1.22518 0.96227 0.96970 0.92622 1.21889 1.04067 0.95014 1.01123 1.22206 1.01850 1.00547 1.00382 1.24759 1.03831 0.86783 0.95585 1.84000 1.51958 1.26847 1.46563 1.20813 1.01861 0.92242 1.04429 1.20914 0.99193 0.96854 1.00419 0.90240 0.87345 0.86548 0.91712 0.91556 0.76704 0.92482 0.88489 0.83793 0.86618 0.92771 0.82710 0.81678 0.74952 0.86123 0.87471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.42 10.97 21.82 0.24 -43.18 16 2 C 0.03 1.74 5.13 85.23 0.44 2.18 16 3 Si 0.98 38.20 29.59 68.60 2.03 40.23 16 4 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 5 H -0.27 -9.81 7.11 99.48 0.71 -9.11 16 6 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 7 C -0.50 -27.18 9.04 23.40 0.21 -26.96 16 8 H 0.07 3.93 7.91 -2.91 -0.02 3.91 16 9 C 0.05 2.89 5.57 -21.28 -0.12 2.77 16 10 C -0.21 -10.32 9.74 22.49 0.22 -10.11 16 11 C -0.12 -5.80 9.92 22.11 0.22 -5.58 16 12 C 0.00 -0.02 6.71 22.79 0.15 0.13 16 13 O -0.33 -12.96 10.09 -85.34 -0.86 -13.83 16 14 C 0.03 0.86 4.36 71.98 0.31 1.17 16 15 C 0.12 2.85 3.45 30.59 0.11 2.95 16 16 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 17 O -0.56 -14.34 13.17 -144.35 -1.90 -16.24 16 18 C 0.04 0.64 5.35 86.30 0.46 1.10 16 19 N -0.68 -11.64 6.36 -517.93 -3.29 -14.94 16 20 C 0.14 2.10 6.22 85.56 0.53 2.63 16 21 C -0.03 -0.61 6.83 24.83 0.17 -0.44 16 22 C -0.20 -3.51 10.81 22.19 0.24 -3.27 16 23 C -0.23 -3.46 10.91 22.19 0.24 -3.22 16 24 C -0.04 -0.60 12.09 66.97 0.81 0.21 16 25 O -0.20 -3.73 10.65 -2.51 -0.03 -3.76 16 26 C -0.17 -8.03 8.96 22.11 0.20 -7.83 16 27 C -0.15 -8.10 8.64 22.48 0.19 -7.91 16 28 H 0.29 13.50 8.30 -92.71 -0.77 12.73 16 29 H 0.11 5.09 8.06 -2.91 -0.02 5.07 16 30 H 0.12 4.89 8.06 -2.91 -0.02 4.87 16 31 H 0.06 1.77 7.63 -2.39 -0.02 1.75 16 32 H 0.07 1.74 7.66 -2.39 -0.02 1.72 16 33 H 0.38 7.34 9.05 -74.06 -0.67 6.67 16 34 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.34 6.27 8.72 -89.70 -0.78 5.48 16 37 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 40 H 0.17 1.71 8.06 -2.91 -0.02 1.69 16 41 H 0.23 1.32 8.06 -2.91 -0.02 1.29 16 42 H 0.12 4.72 6.27 -2.91 -0.02 4.70 16 43 H 0.11 5.82 6.18 -2.91 -0.02 5.80 16 Total: -1.00 -67.20 368.60 0.17 -67.03 By element: Atomic # 1 Polarization: 37.25 SS G_CDS: -0.41 Total: 36.84 kcal Atomic # 6 Polarization: -56.55 SS G_CDS: 4.39 Total: -52.16 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: -3.05 Total: -58.12 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -2.79 Total: -33.82 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 2.03 Total: 40.23 kcal Total: -67.20 0.17 -67.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000560369050.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.404 kcal (2) G-P(sol) polarization free energy of solvation -67.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds