Wall clock time and date at job start Tue Mar 31 2020 11:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 114.00319 * 2 1 4 4 C 1.52995 * 109.47560 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47171 * 64.99733 * 4 3 2 6 6 C 1.37093 * 120.00064 * 270.00212 * 5 4 3 7 7 H 1.08004 * 119.99939 * 145.24629 * 6 5 4 8 8 C 1.38945 * 120.00360 * 325.24095 * 6 5 4 9 9 N 1.31413 * 119.99795 * 337.31910 * 8 6 5 10 10 Si 1.86792 * 120.00311 * 157.31816 * 8 6 5 11 11 H 1.48507 * 109.47289 * 90.00058 * 10 8 6 12 12 H 1.48501 * 109.47247 * 210.00283 * 10 8 6 13 13 H 1.48497 * 109.47336 * 330.00374 * 10 8 6 14 14 C 1.34776 * 119.99507 * 90.00530 * 5 4 3 15 15 O 1.21291 * 120.00530 * 4.87996 * 14 5 4 16 16 C 1.50708 * 119.99671 * 184.88766 * 14 5 4 17 17 C 1.50704 * 109.46999 * 179.33235 * 16 14 5 18 18 C 1.33994 * 126.90634 * 264.97155 * 17 16 14 19 19 O 1.34446 * 110.15469 * 180.02562 * 18 17 16 20 20 C 1.34809 * 110.88696 * 0.02562 * 19 18 17 21 21 C 1.38947 * 133.49357 * 180.28879 * 20 19 18 22 22 C 1.37849 * 119.81669 * 180.11985 * 21 20 19 23 23 C 1.50697 * 119.65765 * 179.75130 * 22 21 20 24 24 C 1.38743 * 120.68485 * 359.55563 * 22 21 20 25 25 C 1.36738 * 120.41521 * 0.21926 * 24 22 21 26 26 C 1.39400 * 119.72046 * 0.02562 * 25 24 22 27 27 H 1.08995 * 109.47213 * 60.00169 * 1 2 3 28 28 H 1.09005 * 109.46833 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.46703 * 299.99753 * 1 2 3 30 30 H 1.09005 * 109.47239 * 59.99713 * 3 2 1 31 31 H 1.09002 * 109.46723 * 300.00524 * 3 2 1 32 32 H 1.09006 * 109.47016 * 305.00025 * 4 3 2 33 33 H 1.08998 * 109.47233 * 184.99761 * 4 3 2 34 34 H 0.97007 * 120.00265 * 184.98914 * 9 8 6 35 35 H 1.08999 * 109.47290 * 59.33273 * 16 14 5 36 36 H 1.08997 * 109.46955 * 299.32927 * 16 14 5 37 37 H 1.08003 * 124.92217 * 0.04328 * 18 17 16 38 38 H 1.08001 * 120.09306 * 359.95016 * 21 20 19 39 39 H 1.08993 * 109.47442 * 269.80067 * 23 22 21 40 40 H 1.08996 * 109.46797 * 29.80420 * 23 22 21 41 41 H 1.09004 * 109.47016 * 149.80065 * 23 22 21 42 42 H 1.07997 * 119.79494 * 180.20112 * 24 22 21 43 43 H 1.08005 * 120.13911 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.0969 -0.7986 -1.3369 7 1 3.8649 -1.3053 -2.2621 8 6 4.5182 -1.5283 -0.2321 9 7 5.2111 -0.9411 0.7177 10 14 4.0999 -3.3437 -0.0968 11 1 5.1770 -4.1483 -0.7276 12 1 3.9764 -3.7179 1.3349 13 1 2.8137 -3.6083 -0.7903 14 6 4.2616 1.3337 -2.3217 15 8 4.2402 2.5424 -2.2223 16 6 4.6076 0.6922 -3.6408 17 6 4.8666 1.7641 -4.6680 18 6 3.9888 2.2635 -5.5487 19 8 4.5777 3.2051 -6.3065 20 6 5.8697 3.3651 -5.9565 21 6 6.8888 4.1921 -6.4127 22 6 8.1399 4.1186 -5.8388 23 6 9.2441 5.0132 -6.3402 24 6 8.3921 3.2322 -4.8016 25 6 7.4018 2.4130 -4.3348 26 6 6.1315 2.4695 -4.9062 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8515 0.5681 0.8410 33 1 3.9785 2.1765 0.0889 34 1 5.5672 -1.4646 1.4527 35 1 3.7776 0.0669 -3.9696 36 1 5.5006 0.0784 -3.5231 37 1 2.9577 1.9545 -5.6369 38 1 6.7019 4.8887 -7.2166 39 1 9.7838 4.5097 -7.1421 40 1 8.8160 5.9419 -6.7175 41 1 9.9309 5.2353 -5.5234 42 1 9.3769 3.1889 -4.3602 43 1 7.6032 1.7244 -3.5275 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562641425.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:44 Heat of formation + Delta-G solvation = -47.555446 kcal Electronic energy + Delta-G solvation = -26573.727484 eV Core-core repulsion = 22778.912510 eV Total energy + Delta-G solvation = -3794.814973 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.07664 -38.61636 -37.96831 -36.95745 -34.72015 -33.53398 -31.54171 -31.49395 -30.23588 -29.50259 -27.27388 -26.23444 -25.74686 -24.58936 -22.95322 -22.04941 -21.13423 -19.83791 -18.90458 -17.14896 -16.85782 -16.40479 -16.15861 -15.66959 -15.37348 -15.27841 -15.05865 -14.43877 -14.31929 -14.07517 -14.00251 -13.74094 -13.58011 -13.46584 -12.74191 -12.40908 -12.15786 -12.03173 -11.95085 -11.74804 -11.55155 -11.49920 -11.17057 -11.14670 -10.97716 -10.81039 -10.63265 -10.48365 -10.34567 -10.02950 -9.53419 -9.12459 -8.96278 -8.42741 -8.27381 -7.69365 -7.44729 -6.30455 -3.93634 1.21249 1.64579 2.72892 3.13031 3.17012 3.27944 3.33963 3.90557 3.95998 4.20112 4.52520 4.80571 4.80730 4.94769 5.03891 5.11144 5.17836 5.39704 5.42631 5.55608 5.64933 5.66471 5.71978 5.77102 5.81548 5.91515 5.96516 6.00189 6.06608 6.08738 6.26811 6.33370 6.39825 6.42880 6.56840 6.63339 6.71825 6.73910 6.88894 6.96813 7.31052 7.50918 7.54207 7.83528 8.03029 8.41349 9.16253 9.56483 9.98111 10.72513 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016415 B = 0.003700 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.399072 B = 7565.742974 C = 8272.059344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.361 6.361 3 C 0.055 3.945 4 C 0.109 3.891 5 N -0.430 5.430 6 C -0.327 4.327 7 H 0.087 0.913 8 C 0.053 3.947 9 N -0.864 5.864 10 Si 0.915 3.085 11 H -0.281 1.281 12 H -0.284 1.284 13 H -0.268 1.268 14 C 0.469 3.531 15 O -0.602 6.602 16 C -0.054 4.054 17 C -0.128 4.128 18 C -0.008 4.008 19 O -0.198 6.198 20 C 0.053 3.947 21 C -0.116 4.116 22 C -0.070 4.070 23 C -0.108 4.108 24 C -0.142 4.142 25 C -0.054 4.054 26 C -0.113 4.113 27 H 0.031 0.969 28 H 0.077 0.923 29 H 0.029 0.971 30 H 0.038 0.962 31 H 0.037 0.963 32 H 0.118 0.882 33 H 0.071 0.929 34 H 0.269 0.731 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.203 0.797 38 H 0.126 0.874 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.125 0.875 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.779 4.646 -8.992 10.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C -0.023 4.023 4 C -0.015 4.015 5 N -0.148 5.148 6 C -0.455 4.455 7 H 0.105 0.895 8 C -0.153 4.153 9 N -0.501 5.501 10 Si 0.742 3.258 11 H -0.207 1.207 12 H -0.209 1.209 13 H -0.193 1.193 14 C 0.258 3.742 15 O -0.488 6.488 16 C -0.094 4.094 17 C -0.130 4.130 18 C -0.072 4.072 19 O -0.100 6.100 20 C 0.005 3.995 21 C -0.134 4.134 22 C -0.070 4.070 23 C -0.165 4.165 24 C -0.160 4.160 25 C -0.072 4.072 26 C -0.113 4.113 27 H 0.049 0.951 28 H 0.095 0.905 29 H 0.048 0.952 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.135 0.865 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.108 0.892 36 H 0.116 0.884 37 H 0.219 0.781 38 H 0.144 0.856 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.143 0.857 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.787 5.170 -8.898 10.321 hybrid contribution -0.648 -0.928 0.449 1.217 sum 0.139 4.242 -8.449 9.455 Atomic orbital electron populations 1.22644 0.83612 1.01687 0.98764 1.88162 1.17177 1.27614 1.94992 1.23024 0.96615 0.84316 0.98357 1.21511 0.89180 0.99236 0.91549 1.43317 1.56189 1.06240 1.09018 1.19251 1.45833 0.80599 0.99787 0.89542 1.25191 0.94330 0.99766 0.95999 1.69819 1.30576 1.36833 1.12884 0.86139 0.79163 0.82864 0.77661 1.20726 1.20931 1.19292 1.20223 0.80738 0.86793 0.86468 1.90542 1.58050 1.14583 1.85668 1.19804 1.03630 0.94863 0.91126 1.20819 0.91921 1.01138 0.99120 1.23559 0.98286 0.91427 0.93929 1.83937 1.21273 1.51015 1.53796 1.19551 0.83799 0.99020 0.97110 1.19612 0.90110 1.00782 1.02901 1.19549 0.93772 0.97484 0.96182 1.20739 0.96314 0.98101 1.01314 1.20589 0.99431 0.97714 0.98282 1.20355 0.90728 0.98099 0.98068 1.19781 0.94878 0.98724 0.97966 0.95059 0.90474 0.95223 0.94376 0.94498 0.86483 0.91116 0.92100 0.89236 0.88380 0.78072 0.85645 0.91188 0.91615 0.91348 0.85723 0.85413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.36 -7.67 10.18 -35.23 -0.36 -8.03 16 3 C 0.05 1.14 6.28 37.15 0.23 1.37 16 4 C 0.11 2.61 5.47 -4.04 -0.02 2.59 16 5 N -0.43 -10.67 2.52 -114.81 -0.29 -10.96 16 6 C -0.33 -8.16 8.20 -14.94 -0.12 -8.29 16 7 H 0.09 2.06 7.00 -52.48 -0.37 1.69 16 8 C 0.05 1.32 4.95 -17.47 -0.09 1.24 16 9 N -0.86 -22.73 11.34 55.50 0.63 -22.10 16 10 Si 0.91 19.85 29.61 -169.99 -5.03 14.82 16 11 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 13 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 14 C 0.47 11.30 7.62 -10.98 -0.08 11.21 16 15 O -0.60 -15.97 15.59 5.55 0.09 -15.88 16 16 C -0.05 -1.09 4.86 -29.03 -0.14 -1.23 16 17 C -0.13 -2.44 4.85 -102.66 -0.50 -2.94 16 18 C -0.01 -0.13 11.89 29.24 0.35 0.21 16 19 O -0.20 -3.44 10.58 3.92 0.04 -3.40 16 20 C 0.05 0.92 7.42 -38.47 -0.29 0.64 16 21 C -0.12 -1.69 9.70 -39.46 -0.38 -2.07 16 22 C -0.07 -0.93 5.88 -104.58 -0.61 -1.54 16 23 C -0.11 -1.01 9.99 36.00 0.36 -0.65 16 24 C -0.14 -2.06 9.62 -39.94 -0.38 -2.44 16 25 C -0.05 -0.94 10.05 -39.69 -0.40 -1.34 16 26 C -0.11 -2.13 6.38 -105.16 -0.67 -2.80 16 27 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.12 3.02 5.37 -51.93 -0.28 2.74 16 33 H 0.07 1.72 7.36 -51.93 -0.38 1.34 16 34 H 0.27 6.71 8.32 -40.82 -0.34 6.37 16 35 H 0.09 1.61 7.76 -51.93 -0.40 1.20 16 36 H 0.10 1.95 8.06 -51.93 -0.42 1.53 16 37 H 0.20 2.62 8.06 -52.48 -0.42 2.20 16 38 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.54 8.07 -51.93 -0.42 0.12 16 41 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 42 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 43 H 0.13 2.21 8.06 -52.48 -0.42 1.79 16 LS Contribution 366.41 15.07 5.52 5.52 Total: -1.00 -31.43 366.41 -7.09 -38.52 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -6.05 Total: 5.95 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -1.64 Total: -4.44 kcal Atomic # 7 Polarization: -33.40 SS G_CDS: 0.34 Total: -33.06 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -0.23 Total: -27.31 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.03 Total: 14.82 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.43 -7.09 -38.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562641425.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.038 kcal (2) G-P(sol) polarization free energy of solvation -31.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds