Wall clock time and date at job start Tue Mar 31 2020 11:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 114.00319 * 2 1 4 4 C 1.52995 * 109.47560 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47171 * 64.99733 * 4 3 2 6 6 C 1.37093 * 120.00064 * 270.00212 * 5 4 3 7 7 H 1.08004 * 119.99939 * 145.24629 * 6 5 4 8 8 C 1.38945 * 120.00360 * 325.24095 * 6 5 4 9 9 N 1.31413 * 119.99795 * 337.31910 * 8 6 5 10 10 Si 1.86792 * 120.00311 * 157.31816 * 8 6 5 11 11 H 1.48507 * 109.47289 * 90.00058 * 10 8 6 12 12 H 1.48501 * 109.47247 * 210.00283 * 10 8 6 13 13 H 1.48497 * 109.47336 * 330.00374 * 10 8 6 14 14 C 1.34776 * 119.99507 * 90.00530 * 5 4 3 15 15 O 1.21291 * 120.00530 * 4.87996 * 14 5 4 16 16 C 1.50708 * 119.99671 * 184.88766 * 14 5 4 17 17 C 1.50704 * 109.46999 * 179.33235 * 16 14 5 18 18 C 1.33994 * 126.90634 * 264.97155 * 17 16 14 19 19 O 1.34446 * 110.15469 * 180.02562 * 18 17 16 20 20 C 1.34809 * 110.88696 * 0.02562 * 19 18 17 21 21 C 1.38947 * 133.49357 * 180.28879 * 20 19 18 22 22 C 1.37849 * 119.81669 * 180.11985 * 21 20 19 23 23 C 1.50697 * 119.65765 * 179.75130 * 22 21 20 24 24 C 1.38743 * 120.68485 * 359.55563 * 22 21 20 25 25 C 1.36738 * 120.41521 * 0.21926 * 24 22 21 26 26 C 1.39400 * 119.72046 * 0.02562 * 25 24 22 27 27 H 1.08995 * 109.47213 * 60.00169 * 1 2 3 28 28 H 1.09005 * 109.46833 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.46703 * 299.99753 * 1 2 3 30 30 H 1.09005 * 109.47239 * 59.99713 * 3 2 1 31 31 H 1.09002 * 109.46723 * 300.00524 * 3 2 1 32 32 H 1.09006 * 109.47016 * 305.00025 * 4 3 2 33 33 H 1.08998 * 109.47233 * 184.99761 * 4 3 2 34 34 H 0.97007 * 120.00265 * 184.98914 * 9 8 6 35 35 H 1.08999 * 109.47290 * 59.33273 * 16 14 5 36 36 H 1.08997 * 109.46955 * 299.32927 * 16 14 5 37 37 H 1.08003 * 124.92217 * 0.04328 * 18 17 16 38 38 H 1.08001 * 120.09306 * 359.95016 * 21 20 19 39 39 H 1.08993 * 109.47442 * 269.80067 * 23 22 21 40 40 H 1.08996 * 109.46797 * 29.80420 * 23 22 21 41 41 H 1.09004 * 109.47016 * 149.80065 * 23 22 21 42 42 H 1.07997 * 119.79494 * 180.20112 * 24 22 21 43 43 H 1.08005 * 120.13911 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.0969 -0.7986 -1.3369 7 1 3.8649 -1.3053 -2.2621 8 6 4.5182 -1.5283 -0.2321 9 7 5.2111 -0.9411 0.7177 10 14 4.0999 -3.3437 -0.0968 11 1 5.1770 -4.1483 -0.7276 12 1 3.9764 -3.7179 1.3349 13 1 2.8137 -3.6083 -0.7903 14 6 4.2616 1.3337 -2.3217 15 8 4.2402 2.5424 -2.2223 16 6 4.6076 0.6922 -3.6408 17 6 4.8666 1.7641 -4.6680 18 6 3.9888 2.2635 -5.5487 19 8 4.5777 3.2051 -6.3065 20 6 5.8697 3.3651 -5.9565 21 6 6.8888 4.1921 -6.4127 22 6 8.1399 4.1186 -5.8388 23 6 9.2441 5.0132 -6.3402 24 6 8.3921 3.2322 -4.8016 25 6 7.4018 2.4130 -4.3348 26 6 6.1315 2.4695 -4.9062 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8515 0.5681 0.8410 33 1 3.9785 2.1765 0.0889 34 1 5.5672 -1.4646 1.4527 35 1 3.7776 0.0669 -3.9696 36 1 5.5006 0.0784 -3.5231 37 1 2.9577 1.9545 -5.6369 38 1 6.7019 4.8887 -7.2166 39 1 9.7838 4.5097 -7.1421 40 1 8.8160 5.9419 -6.7175 41 1 9.9309 5.2353 -5.5234 42 1 9.3769 3.1889 -4.3602 43 1 7.6032 1.7244 -3.5275 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000562641425.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:43 Heat of formation + Delta-G solvation = -65.279282 kcal Electronic energy + Delta-G solvation = -26574.496047 eV Core-core repulsion = 22778.912510 eV Total energy + Delta-G solvation = -3795.583537 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.36525 -40.47497 -39.12715 -38.56036 -36.58532 -34.93855 -33.47621 -32.69327 -31.44881 -31.14236 -28.74983 -27.30382 -27.23647 -26.41284 -24.19655 -23.74721 -22.30738 -21.37742 -20.65030 -18.77955 -18.13772 -18.01807 -17.68598 -17.10684 -17.06311 -16.83981 -16.29856 -16.14959 -16.01382 -15.67261 -15.33524 -15.15641 -14.75352 -14.45915 -14.38451 -13.85863 -13.60376 -13.43176 -13.31363 -13.01159 -12.93018 -12.86248 -12.74224 -12.61555 -12.49050 -12.43340 -12.36008 -12.08578 -11.80337 -11.73777 -11.04411 -10.83921 -10.51992 -10.26837 -9.52570 -9.40759 -8.95107 -8.22462 -5.90983 -0.00486 0.41245 1.38822 1.43999 1.52222 1.62945 1.89058 2.04298 2.38929 2.72184 2.99311 3.05995 3.26132 3.58537 3.69275 3.95395 4.03999 4.18575 4.24635 4.28362 4.37400 4.41462 4.50619 4.54089 4.55382 4.62169 4.64956 4.72398 4.75421 4.80953 4.83801 4.90434 4.91038 5.05311 5.22792 5.28809 5.37802 5.43344 5.52212 5.56422 5.61011 5.77044 6.04375 6.23412 6.42619 6.47732 7.22288 7.65888 8.07363 8.81359 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016415 B = 0.003700 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.399072 B = 7565.742974 C = 8272.059344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.393 6.393 3 C 0.068 3.932 4 C 0.106 3.894 5 N -0.439 5.439 6 C -0.336 4.336 7 H 0.096 0.904 8 C 0.013 3.987 9 N -0.897 5.897 10 Si 0.977 3.023 11 H -0.273 1.273 12 H -0.287 1.287 13 H -0.263 1.263 14 C 0.459 3.541 15 O -0.633 6.633 16 C -0.040 4.040 17 C -0.167 4.167 18 C 0.006 3.994 19 O -0.200 6.200 20 C 0.030 3.970 21 C -0.117 4.117 22 C -0.064 4.064 23 C -0.105 4.105 24 C -0.137 4.137 25 C -0.087 4.087 26 C -0.145 4.145 27 H 0.041 0.959 28 H 0.093 0.907 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.031 0.969 32 H 0.099 0.901 33 H 0.054 0.946 34 H 0.269 0.731 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.237 0.763 38 H 0.155 0.845 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.151 0.849 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.553 4.818 -10.518 11.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.311 6.311 3 C -0.010 4.010 4 C -0.018 4.018 5 N -0.156 5.156 6 C -0.464 4.464 7 H 0.114 0.886 8 C -0.189 4.189 9 N -0.535 5.535 10 Si 0.802 3.198 11 H -0.199 1.199 12 H -0.213 1.213 13 H -0.187 1.187 14 C 0.249 3.751 15 O -0.521 6.521 16 C -0.079 4.079 17 C -0.168 4.168 18 C -0.058 4.058 19 O -0.102 6.102 20 C -0.017 4.017 21 C -0.135 4.135 22 C -0.065 4.065 23 C -0.161 4.161 24 C -0.154 4.154 25 C -0.105 4.105 26 C -0.146 4.146 27 H 0.059 0.941 28 H 0.111 0.889 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.049 0.951 32 H 0.116 0.884 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.127 0.873 36 H 0.109 0.891 37 H 0.253 0.747 38 H 0.173 0.827 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.168 0.832 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.556 5.336 -10.435 11.734 hybrid contribution -0.531 -0.900 0.922 1.394 sum 0.026 4.436 -9.513 10.496 Atomic orbital electron populations 1.22889 0.80793 1.03288 1.00242 1.88089 1.20277 1.27508 1.95267 1.22769 0.94304 0.84719 0.99222 1.21438 0.91667 0.97724 0.90926 1.43543 1.56230 1.06521 1.09355 1.19549 1.45710 0.80752 1.00346 0.88615 1.25945 0.93902 1.03541 0.95549 1.69930 1.31675 1.38338 1.13545 0.85186 0.79131 0.78253 0.77279 1.19865 1.21286 1.18716 1.20922 0.79945 0.86560 0.87671 1.90500 1.59295 1.15955 1.86380 1.19623 1.03777 0.95140 0.89367 1.20879 0.93194 1.02432 1.00341 1.24158 0.99139 0.90020 0.92459 1.83932 1.21421 1.51034 1.53829 1.19995 0.84322 0.99856 0.97501 1.20104 0.89711 1.00368 1.03326 1.20071 0.94531 0.96950 0.94900 1.20838 0.95133 0.97919 1.02259 1.20966 0.99741 0.96618 0.98122 1.20453 0.91560 0.99631 0.98838 1.20078 0.95424 0.99857 0.99249 0.94052 0.88875 0.93191 0.91851 0.95078 0.88366 0.92807 0.92091 0.87301 0.89145 0.74692 0.82738 0.89300 0.90039 0.90128 0.83156 0.87009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.72 11.01 113.37 1.25 1.97 16 2 O -0.39 -16.36 10.18 -148.98 -1.52 -17.88 16 3 C 0.07 2.82 6.28 71.98 0.45 3.27 16 4 C 0.11 5.27 5.47 86.38 0.47 5.75 16 5 N -0.44 -22.40 2.52 -635.54 -1.60 -24.00 16 6 C -0.34 -16.98 8.20 84.04 0.69 -16.29 16 7 H 0.10 4.55 7.00 -2.91 -0.02 4.53 16 8 C 0.01 0.66 4.95 84.92 0.42 1.08 16 9 N -0.90 -48.31 11.34 21.66 0.25 -48.06 16 10 Si 0.98 40.61 29.61 68.60 2.03 42.64 16 11 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 12 H -0.29 -12.00 7.11 99.48 0.71 -11.30 16 13 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 14 C 0.46 22.84 7.62 87.66 0.67 23.51 16 15 O -0.63 -34.86 15.59 -3.06 -0.05 -34.91 16 16 C -0.04 -1.62 4.86 29.11 0.14 -1.48 16 17 C -0.17 -6.49 4.85 -18.59 -0.09 -6.58 16 18 C 0.01 0.21 11.89 66.85 0.79 1.00 16 19 O -0.20 -6.84 10.58 -8.90 -0.09 -6.94 16 20 C 0.03 1.05 7.42 22.99 0.17 1.22 16 21 C -0.12 -3.21 9.70 22.35 0.22 -2.99 16 22 C -0.06 -1.58 5.88 -19.84 -0.12 -1.69 16 23 C -0.11 -1.57 9.99 71.23 0.71 -0.86 16 24 C -0.14 -3.85 9.62 22.04 0.21 -3.64 16 25 C -0.09 -3.13 10.05 22.20 0.22 -2.90 16 26 C -0.15 -5.65 6.38 -20.22 -0.13 -5.78 16 27 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.09 2.45 8.14 -2.38 -0.02 2.43 16 29 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 31 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.10 5.26 5.37 -2.38 -0.01 5.24 16 33 H 0.05 2.76 7.36 -2.39 -0.02 2.74 16 34 H 0.27 13.76 8.32 -92.70 -0.77 12.99 16 35 H 0.11 3.91 7.76 -2.39 -0.02 3.89 16 36 H 0.09 3.77 8.06 -2.39 -0.02 3.75 16 37 H 0.24 5.74 8.06 -2.91 -0.02 5.71 16 38 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 39 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.08 1.01 8.07 -2.39 -0.02 0.99 16 41 H 0.08 1.05 8.08 -2.39 -0.02 1.03 16 42 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 43 H 0.11 4.21 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -70.13 366.41 6.12 -64.01 By element: Atomic # 1 Polarization: 28.55 SS G_CDS: 1.01 Total: 29.56 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: 6.09 Total: -4.42 kcal Atomic # 7 Polarization: -70.71 SS G_CDS: -1.36 Total: -72.06 kcal Atomic # 8 Polarization: -58.07 SS G_CDS: -1.66 Total: -59.73 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Total: -70.13 6.12 -64.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562641425.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.270 kcal (2) G-P(sol) polarization free energy of solvation -70.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds