Wall clock time and date at job start Tue Mar 31 2020 11:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38328 * 119.87447 * 2 1 4 4 C 1.38020 * 120.11810 * 180.02562 * 3 2 1 5 5 C 1.39331 * 119.87847 * 0.02562 * 4 3 2 6 6 C 1.48399 * 120.12140 * 179.97438 * 5 4 3 7 7 N 1.31374 * 125.55343 * 0.02562 * 6 5 4 8 8 N 1.40411 * 106.93139 * 179.73912 * 7 6 5 9 9 H 0.96993 * 126.75221 * 180.02562 * 8 7 6 10 10 C 1.35167 * 106.49499 * 0.02562 * 8 7 6 11 11 S 1.76205 * 125.97885 * 179.97438 * 10 8 7 12 12 C 1.80997 * 100.00151 * 179.97438 * 11 10 8 13 13 C 1.53000 * 109.47509 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.46590 * 299.99771 * 13 12 11 15 15 C 1.52997 * 109.47028 * 59.99237 * 13 12 11 16 16 C 1.50692 * 109.47554 * 180.02562 * 13 12 11 17 17 H 1.08002 * 120.00049 * 359.97438 * 16 13 12 18 18 C 1.37879 * 120.00353 * 179.97438 * 16 13 12 19 19 N 1.31516 * 119.99729 * 359.97438 * 18 16 13 20 20 Si 1.86796 * 120.00193 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47412 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47372 * 119.99806 * 20 18 16 23 23 H 1.48503 * 109.47200 * 240.00065 * 20 18 16 24 24 N 1.31506 * 108.04402 * 359.97438 * 10 8 7 25 25 C 1.39346 * 119.75984 * 0.24967 * 5 4 3 26 26 C 1.38011 * 119.87603 * 359.49386 * 25 5 4 27 27 H 1.09001 * 109.46915 * 90.00295 * 1 2 3 28 28 H 1.09006 * 109.46865 * 210.00071 * 1 2 3 29 29 H 1.08998 * 109.47460 * 329.99791 * 1 2 3 30 30 H 1.08001 * 119.93976 * 359.97438 * 3 2 1 31 31 H 1.07996 * 120.05843 * 179.97438 * 4 3 2 32 32 H 1.09006 * 109.47236 * 300.00086 * 12 11 10 33 33 H 1.09004 * 109.47338 * 59.99778 * 12 11 10 34 34 H 1.09008 * 109.47324 * 60.00092 * 14 13 12 35 35 H 1.09002 * 109.46856 * 179.97438 * 14 13 12 36 36 H 1.08996 * 109.47845 * 299.99700 * 14 13 12 37 37 H 1.09006 * 109.46470 * 60.00741 * 15 13 12 38 38 H 1.09004 * 109.46973 * 179.97438 * 15 13 12 39 39 H 1.08999 * 109.48008 * 300.00664 * 15 13 12 40 40 H 0.96996 * 119.99554 * 180.02562 * 19 18 16 41 41 H 1.08002 * 120.06172 * 179.75192 * 25 5 4 42 42 H 1.07998 * 119.94182 * 180.23461 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1995 0.0000 4 6 3.5762 1.2053 -0.0005 5 6 4.2754 0.0002 -0.0016 6 6 5.7594 0.0002 -0.0028 7 7 6.5233 1.0690 -0.0024 8 7 7.8539 0.6207 0.0023 9 1 8.6520 1.1718 0.0040 10 6 7.8037 -0.7300 0.0039 11 16 9.1902 -1.8174 0.0090 12 6 8.3376 -3.4140 0.0096 13 6 9.3697 -4.5434 0.0146 14 6 10.2495 -4.4356 -1.2325 15 6 10.2428 -4.4309 1.2659 16 6 8.6598 -5.8727 0.0145 17 1 7.5804 -5.9084 0.0117 18 6 9.3883 -7.0433 0.0181 19 7 10.7027 -6.9998 0.0210 20 14 8.5083 -8.6910 0.0187 21 1 7.0401 -8.4682 0.0156 22 1 8.8953 -9.4594 -1.1917 23 1 8.8898 -9.4555 1.2333 24 7 6.5391 -1.0907 0.0011 25 6 3.5762 -1.2051 -0.0074 26 6 2.1961 -1.1994 -0.0015 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8899 0.5138 30 1 1.6530 2.1330 -0.0004 31 1 4.1131 2.1423 -0.0010 32 1 7.7111 -3.4910 0.8983 33 1 7.7152 -3.4939 -0.8817 34 1 10.7630 -3.4741 -1.2329 35 1 10.9851 -5.2400 -1.2288 36 1 9.6276 -4.5158 -2.1240 37 1 9.6159 -4.5077 2.1544 38 1 10.9778 -5.2358 1.2697 39 1 10.7563 -3.4695 1.2656 40 1 11.2152 -7.8233 0.0231 41 1 4.1133 -2.1421 -0.0123 42 1 1.6531 -2.1329 -0.0022 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565314892.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:01 Heat of formation + Delta-G solvation = 90.507042 kcal Electronic energy + Delta-G solvation = -22981.659229 eV Core-core repulsion = 19667.876716 eV Total energy + Delta-G solvation = -3313.782513 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.77704 -39.25559 -36.08012 -33.83489 -32.12977 -31.56093 -31.16715 -30.73126 -27.18047 -26.39278 -25.75413 -25.17821 -23.47364 -22.56125 -22.04622 -20.28986 -19.30836 -18.35531 -16.37265 -16.19347 -16.02741 -15.54035 -15.24627 -14.98209 -14.76629 -14.00361 -13.95864 -13.51338 -13.45234 -13.33941 -12.96860 -12.45692 -12.36810 -12.36751 -11.96729 -11.51640 -11.47135 -11.30486 -11.12139 -10.93746 -10.76531 -10.43374 -10.38442 -10.35209 -10.09908 -10.08354 -10.01334 -9.62065 -9.49292 -9.03335 -8.74361 -8.49837 -8.42292 -7.37399 -6.05129 -4.15905 0.79928 1.33148 1.36615 1.73377 2.62016 2.94023 2.98101 3.25734 3.34646 3.38979 3.84623 4.20099 4.37678 4.60273 4.71921 4.83021 4.94001 5.21745 5.23251 5.34699 5.36908 5.57289 5.63815 5.82542 5.96868 5.97500 6.04335 6.06768 6.25648 6.42033 6.47103 6.47631 6.51979 6.75458 6.84080 6.85595 6.93587 6.95471 6.97745 7.29629 7.51978 7.67410 7.96743 8.03486 8.09006 8.33117 8.83814 9.49915 10.96245 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.014066 B = 0.003212 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.153407 B = 8715.976424 C =10509.762535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.076 4.076 3 C -0.128 4.128 4 C -0.082 4.082 5 C -0.016 4.016 6 C 0.272 3.728 7 N -0.313 5.313 8 N -0.472 5.472 9 H 0.442 0.558 10 C 0.269 3.731 11 S -0.008 6.008 12 C -0.065 4.065 13 C 0.079 3.921 14 C -0.136 4.136 15 C -0.136 4.136 16 C -0.504 4.504 17 H 0.060 0.940 18 C 0.067 3.933 19 N -0.885 5.885 20 Si 0.894 3.106 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 N -0.531 5.531 25 C -0.069 4.069 26 C -0.125 4.125 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.125 0.875 31 H 0.129 0.871 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.015 0.985 35 H 0.088 0.912 36 H 0.030 0.970 37 H 0.030 0.970 38 H 0.088 0.912 39 H 0.016 0.984 40 H 0.260 0.740 41 H 0.138 0.862 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.865 14.448 -0.061 18.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.077 4.077 3 C -0.146 4.146 4 C -0.102 4.102 5 C -0.018 4.018 6 C -0.010 4.010 7 N -0.144 5.144 8 N -0.193 5.193 9 H 0.289 0.711 10 C -0.115 4.115 11 S 0.220 5.780 12 C -0.213 4.213 13 C 0.076 3.924 14 C -0.194 4.194 15 C -0.194 4.194 16 C -0.543 4.543 17 H 0.078 0.922 18 C -0.134 4.134 19 N -0.523 5.523 20 Si 0.722 3.278 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 N -0.264 5.264 25 C -0.089 4.089 26 C -0.143 4.143 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.143 0.857 31 H 0.147 0.853 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.034 0.966 35 H 0.107 0.893 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.106 0.894 39 H 0.034 0.966 40 H 0.071 0.929 41 H 0.156 0.844 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.949 14.977 -0.058 18.552 hybrid contribution -0.939 -0.829 -0.008 1.252 sum -11.888 14.148 -0.066 18.480 Atomic orbital electron populations 1.20821 0.91126 1.02854 1.02408 1.20064 0.96175 0.93227 0.98258 1.20905 0.93589 0.97663 1.02451 1.21160 0.94057 0.97297 0.97699 1.17457 0.85790 0.94253 1.04332 1.22288 0.94502 0.86194 0.97969 1.77961 0.86832 1.21457 1.28173 1.47798 1.07420 1.04955 1.59098 0.71146 1.27063 0.99172 0.87493 0.97787 1.86007 1.00789 1.00669 1.90502 1.24187 1.01992 0.89519 1.05632 1.18098 0.90554 0.90274 0.93426 1.21933 1.00706 0.99430 0.97369 1.21931 1.00712 0.99424 0.97370 1.21022 0.92986 0.89231 1.51109 0.92225 1.24880 0.94861 0.98980 0.94727 1.69814 1.04775 1.27338 1.50371 0.86498 0.79982 0.83734 0.77584 1.19711 1.21010 1.21014 1.71120 0.98644 1.29658 1.26932 1.21308 0.93882 0.97965 0.95773 1.21007 0.93755 0.97778 1.01799 0.91032 0.91374 0.91526 0.85703 0.85264 0.89692 0.89688 0.96571 0.89347 0.95119 0.95124 0.89357 0.96551 0.92941 0.84374 0.85442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 10.01 36.01 0.36 -0.44 16 2 C -0.08 -0.76 5.88 -104.56 -0.62 -1.37 16 3 C -0.13 -1.30 9.68 -39.63 -0.38 -1.69 16 4 C -0.08 -1.01 9.68 -39.26 -0.38 -1.39 16 5 C -0.02 -0.23 5.88 -104.89 -0.62 -0.84 16 6 C 0.27 4.60 7.77 -156.63 -1.22 3.38 16 7 N -0.31 -5.04 12.40 32.10 0.40 -4.64 16 8 N -0.47 -6.94 7.47 30.44 0.23 -6.71 16 9 H 0.44 4.88 8.96 -182.37 -1.63 3.24 16 10 C 0.27 4.56 8.30 -89.42 -0.74 3.82 16 11 S -0.01 -0.14 19.36 -107.50 -2.08 -2.23 16 12 C -0.06 -1.31 4.15 37.16 0.15 -1.15 16 13 C 0.08 1.80 0.52 -155.67 -0.08 1.72 16 14 C -0.14 -3.07 8.01 37.16 0.30 -2.78 16 15 C -0.14 -3.07 8.01 37.16 0.30 -2.78 16 16 C -0.50 -12.86 8.01 -34.44 -0.28 -13.13 16 17 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 18 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 19 N -0.88 -23.28 9.35 55.43 0.52 -22.76 16 20 Si 0.89 20.33 29.54 -169.99 -5.02 15.31 16 21 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 N -0.53 -9.68 10.19 -11.25 -0.11 -9.80 16 25 C -0.07 -0.94 9.69 -39.25 -0.38 -1.32 16 26 C -0.13 -1.39 9.68 -39.63 -0.38 -1.78 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 29 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 30 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 31 H 0.13 1.49 7.83 -52.49 -0.41 1.08 16 32 H 0.08 1.75 8.14 -51.91 -0.42 1.33 16 33 H 0.08 1.75 8.14 -51.91 -0.42 1.33 16 34 H 0.02 0.32 6.91 -51.92 -0.36 -0.04 16 35 H 0.09 2.20 6.07 -51.93 -0.32 1.88 16 36 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 2.20 6.07 -51.93 -0.32 1.88 16 39 H 0.02 0.32 6.91 -51.93 -0.36 -0.04 16 40 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 41 H 0.14 1.98 7.83 -52.49 -0.41 1.57 16 42 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 359.69 15.07 5.42 5.42 Total: -1.00 -28.19 359.69 -11.85 -40.05 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -7.14 Total: 3.47 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: -4.06 Total: -18.11 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: 1.03 Total: -43.92 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 16 Polarization: -0.14 SS G_CDS: -2.08 Total: -2.23 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.19 -11.85 -40.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565314892.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.553 kcal (2) G-P(sol) polarization free energy of solvation -28.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds