Wall clock time and date at job start Tue Mar 31 2020 11:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 110.66118 * 2 1 4 4 C 1.54702 * 110.74423 * 236.59606 * 2 1 3 5 5 C 1.51674 * 101.90733 * 267.00694 * 4 2 1 6 6 C 1.37302 * 132.06453 * 164.11166 * 5 4 2 7 7 C 1.39810 * 119.85924 * 180.93591 * 6 5 4 8 8 C 1.47608 * 120.26923 * 180.02562 * 7 6 5 9 9 O 1.21575 * 120.00086 * 173.14085 * 8 7 6 10 10 N 1.34775 * 119.99636 * 353.14831 * 8 7 6 11 11 C 1.47579 * 134.49184 * 174.44580 * 10 8 7 12 12 C 1.53945 * 86.11937 * 155.35407 * 11 10 8 13 13 O 1.42905 * 113.74057 * 269.15232 * 12 11 10 14 14 C 1.50696 * 113.74344 * 137.95429 * 12 11 10 15 15 H 1.08003 * 120.00225 * 1.92087 * 14 12 11 16 16 C 1.37880 * 119.99800 * 181.92454 * 14 12 11 17 17 N 1.31514 * 120.00195 * 0.02562 * 16 14 12 18 18 Si 1.86805 * 119.99717 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47127 * 179.97438 * 18 16 14 20 20 H 1.48497 * 109.47291 * 300.00260 * 18 16 14 21 21 H 1.48499 * 109.47018 * 60.00434 * 18 16 14 22 22 C 1.47811 * 134.45743 * 354.30099 * 10 8 7 23 23 C 1.39755 * 119.46573 * 0.27842 * 7 6 5 24 24 C 1.37470 * 120.20139 * 359.27546 * 23 7 6 25 25 C 1.39179 * 106.99825 * 344.65081 * 5 4 2 26 26 O 1.36011 * 111.17271 * 358.82559 * 25 5 4 27 27 H 1.09003 * 109.47130 * 298.25249 * 1 2 3 28 28 H 1.09000 * 109.46914 * 58.25243 * 1 2 3 29 29 H 1.09003 * 109.47090 * 178.24819 * 1 2 3 30 30 H 1.08997 * 109.47343 * 181.74701 * 3 2 1 31 31 H 1.09003 * 109.47163 * 301.75083 * 3 2 1 32 32 H 1.09000 * 109.47429 * 61.75059 * 3 2 1 33 33 H 1.08996 * 110.94343 * 148.85298 * 4 2 1 34 34 H 1.08998 * 110.94250 * 25.16370 * 4 2 1 35 35 H 1.08001 * 120.07554 * 0.92049 * 6 5 4 36 36 H 1.09003 * 113.77080 * 41.04943 * 11 10 8 37 37 H 1.09000 * 113.87028 * 269.66736 * 11 10 8 38 38 H 0.96697 * 113.99973 * 178.07114 * 13 12 11 39 39 H 0.97002 * 119.99567 * 180.02562 * 17 16 14 40 40 H 1.09005 * 113.76502 * 90.38778 * 22 10 8 41 41 H 1.08998 * 113.84070 * 318.92550 * 22 10 8 42 42 H 1.08005 * 119.89617 * 179.55981 * 23 7 6 43 43 H 1.07993 * 119.78770 * 180.30689 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0699 1.4316 0.0000 4 6 2.0780 -0.7965 -1.2077 5 6 2.2613 -2.1797 -0.6132 6 6 2.4418 -3.4125 -1.1902 7 6 2.5672 -4.5472 -0.3832 8 6 2.7621 -5.8768 -0.9939 9 8 2.9950 -6.8406 -0.2905 10 7 2.6819 -6.0222 -2.3314 11 6 2.9161 -7.1400 -3.2660 12 6 1.9521 -6.4086 -4.2177 13 8 0.5857 -6.7978 -4.0635 14 6 2.4037 -6.4070 -5.6554 15 1 3.3127 -6.9179 -5.9365 16 6 1.6564 -5.7531 -6.6120 17 7 0.5497 -5.1304 -6.2696 18 14 2.2166 -5.7505 -8.3941 19 1 1.2461 -4.9847 -9.2169 20 1 3.5564 -5.1174 -8.4909 21 1 2.2922 -7.1477 -8.8912 22 6 2.3216 -5.1262 -3.4504 23 6 2.5013 -4.4132 1.0064 24 6 2.3295 -3.1730 1.5741 25 6 2.2076 -2.0383 0.7703 26 8 2.0391 -0.7361 1.1249 27 1 -0.3633 0.4865 0.9053 28 1 -0.3633 0.5407 -0.8739 29 1 -0.3633 -1.0272 -0.0314 30 1 3.1591 1.4092 -0.0313 31 1 1.6921 1.9624 -0.8739 32 1 1.7430 1.9432 0.9052 33 1 3.0307 -0.3876 -1.5442 34 1 1.3543 -0.8154 -2.0226 35 1 2.4865 -3.5055 -2.2653 36 1 2.5382 -8.0980 -2.9087 37 1 3.9395 -7.1981 -3.6367 38 1 -0.0268 -6.3196 -4.6389 39 1 0.0239 -4.6707 -6.9427 40 1 3.1705 -4.5898 -3.8744 41 1 1.4700 -4.4792 -3.2401 42 1 2.5902 -5.2860 1.6362 43 1 2.2844 -3.0766 2.6488 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577113093.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:40 Heat of formation + Delta-G solvation = -68.884576 kcal Electronic energy + Delta-G solvation = -26766.705922 eV Core-core repulsion = 22970.966048 eV Total energy + Delta-G solvation = -3795.739874 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.48759 -41.31478 -39.37263 -38.12092 -35.87992 -34.90566 -34.15198 -32.65342 -32.02738 -29.94780 -28.39922 -27.73033 -27.18384 -27.12900 -24.40020 -22.86425 -21.90974 -21.51182 -20.25491 -19.31660 -18.56882 -17.99769 -17.59446 -17.08715 -16.82012 -16.49998 -16.34351 -15.98753 -15.43098 -15.24142 -14.87784 -14.85216 -14.45968 -14.29741 -14.19896 -13.86311 -13.75109 -13.58470 -13.43047 -13.40539 -13.20444 -12.93116 -12.84039 -12.75434 -12.67264 -12.27117 -12.22358 -12.10766 -11.81262 -11.66943 -11.41867 -11.03047 -10.64527 -10.23533 -10.05473 -9.68388 -9.22943 -8.25908 -6.43064 -0.25577 0.20468 1.49032 1.51671 1.58318 1.69980 1.87765 2.11415 2.41571 2.70453 2.96547 3.27215 3.36793 3.48275 3.74642 3.77636 3.81334 3.99607 4.05890 4.12431 4.19243 4.39416 4.44644 4.56436 4.60482 4.63504 4.66502 4.72004 4.76915 4.81122 4.83836 4.87803 4.91588 4.95360 5.08983 5.18637 5.20436 5.21044 5.27901 5.33567 5.46490 5.72781 5.92553 6.07387 6.62360 6.75649 7.07564 7.30332 7.43777 8.80117 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013582 B = 0.003972 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.090852 B = 7046.802337 C = 8579.554018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.095 3.905 3 C -0.137 4.137 4 C -0.101 4.101 5 C -0.188 4.188 6 C -0.050 4.050 7 C -0.177 4.177 8 C 0.569 3.431 9 O -0.596 6.596 10 N -0.630 5.630 11 C 0.111 3.889 12 C 0.221 3.779 13 O -0.586 6.586 14 C -0.558 4.558 15 H 0.073 0.927 16 C 0.037 3.963 17 N -0.915 5.915 18 Si 0.966 3.034 19 H -0.282 1.282 20 H -0.267 1.267 21 H -0.277 1.277 22 C 0.090 3.910 23 C -0.031 4.031 24 C -0.147 4.147 25 C 0.128 3.872 26 O -0.302 6.302 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.044 0.956 30 H 0.066 0.934 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.141 0.859 36 H 0.060 0.940 37 H 0.107 0.893 38 H 0.388 0.612 39 H 0.276 0.724 40 H 0.097 0.903 41 H 0.072 0.928 42 H 0.144 0.856 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.346 15.441 8.569 17.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.059 3.941 3 C -0.194 4.194 4 C -0.137 4.137 5 C -0.189 4.189 6 C -0.068 4.068 7 C -0.180 4.180 8 C 0.362 3.638 9 O -0.480 6.480 10 N -0.362 5.362 11 C -0.011 4.011 12 C 0.180 3.820 13 O -0.398 6.398 14 C -0.596 4.596 15 H 0.091 0.909 16 C -0.164 4.164 17 N -0.555 5.555 18 Si 0.792 3.208 19 H -0.207 1.207 20 H -0.192 1.192 21 H -0.202 1.202 22 C -0.032 4.032 23 C -0.050 4.050 24 C -0.165 4.165 25 C 0.082 3.918 26 O -0.217 6.217 27 H 0.095 0.905 28 H 0.116 0.884 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.120 0.880 32 H 0.094 0.906 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.158 0.842 36 H 0.078 0.922 37 H 0.125 0.875 38 H 0.242 0.758 39 H 0.086 0.914 40 H 0.115 0.885 41 H 0.090 0.910 42 H 0.162 0.838 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 1.601 14.819 9.692 17.779 hybrid contribution -0.140 -0.156 -1.374 1.390 sum 1.460 14.663 8.318 16.921 Atomic orbital electron populations 1.22238 0.92523 1.02612 1.04656 1.23111 0.95128 0.93787 0.82122 1.21878 1.01980 0.90828 1.04702 1.22041 1.03951 0.88997 0.98756 1.20935 1.07512 0.95997 0.94422 1.21073 0.94426 0.90257 1.01078 1.19721 1.11185 0.92056 0.95028 1.18263 0.76277 0.88725 0.80568 1.90660 1.53604 1.42149 1.61608 1.50090 1.65603 1.16738 1.03778 1.23507 1.00259 0.91225 0.86071 1.20114 0.80450 0.89249 0.92179 1.86065 1.18758 1.67595 1.67384 1.21685 1.10216 1.35222 0.92506 0.90896 1.25702 0.94455 0.93088 1.03137 1.69460 1.15356 1.34436 1.36203 0.85474 0.78390 0.78175 0.78796 1.20736 1.19163 1.20210 1.24265 0.99313 0.96972 0.82620 1.21027 0.93440 0.97713 0.92842 1.20366 1.06873 0.88162 1.01111 1.19989 0.93413 0.85510 0.92922 1.86833 1.79518 1.15731 1.39594 0.90469 0.88381 0.93667 0.91448 0.87951 0.90577 0.87606 0.87735 0.84185 0.92170 0.87521 0.75827 0.91399 0.88511 0.90989 0.83805 0.82322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 8.84 71.98 0.64 -1.99 16 2 C 0.10 1.71 1.26 -10.21 -0.01 1.70 16 3 C -0.14 -1.63 8.96 71.98 0.64 -0.98 16 4 C -0.10 -2.04 6.19 30.74 0.19 -1.85 16 5 C -0.19 -5.21 6.25 -19.55 -0.12 -5.33 16 6 C -0.05 -1.64 9.07 22.43 0.20 -1.43 16 7 C -0.18 -6.45 5.88 -20.06 -0.12 -6.57 16 8 C 0.57 24.87 7.98 86.72 0.69 25.56 16 9 O -0.60 -29.09 17.11 -3.95 -0.07 -29.16 16 10 N -0.63 -27.42 3.60 -843.30 -3.03 -30.46 16 11 C 0.11 4.92 8.23 86.49 0.71 5.63 16 12 C 0.22 10.51 1.40 -10.88 -0.02 10.50 16 13 O -0.59 -30.48 13.48 -148.98 -2.01 -32.49 16 14 C -0.56 -27.22 8.61 25.60 0.22 -27.00 16 15 H 0.07 3.44 7.81 -2.91 -0.02 3.42 16 16 C 0.04 1.78 5.39 84.66 0.46 2.23 16 17 N -0.91 -44.60 11.20 21.45 0.24 -44.36 16 18 Si 0.97 38.19 29.54 68.60 2.03 40.21 16 19 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 20 H -0.27 -10.19 7.11 99.48 0.71 -9.49 16 21 H -0.28 -11.03 7.11 99.48 0.71 -10.33 16 22 C 0.09 3.80 5.61 86.44 0.48 4.29 16 23 C -0.03 -0.98 9.57 22.46 0.21 -0.77 16 24 C -0.15 -3.88 10.05 22.41 0.23 -3.65 16 25 C 0.13 3.46 6.95 22.82 0.16 3.62 16 26 O -0.30 -7.24 10.51 -93.67 -0.98 -8.22 16 27 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.04 0.92 8.12 -2.39 -0.02 0.90 16 30 H 0.07 0.83 8.12 -2.39 -0.02 0.81 16 31 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.11 1.86 7.91 -2.39 -0.02 1.84 16 34 H 0.10 1.94 7.92 -2.39 -0.02 1.92 16 35 H 0.14 4.67 4.11 -2.91 -0.01 4.65 16 36 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 37 H 0.11 4.22 8.09 -2.39 -0.02 4.20 16 38 H 0.39 20.19 6.60 -74.06 -0.49 19.70 16 39 H 0.28 12.78 8.31 -92.71 -0.77 12.01 16 40 H 0.10 3.79 8.00 -2.38 -0.02 3.77 16 41 H 0.07 3.04 6.90 -2.39 -0.02 3.02 16 42 H 0.14 4.37 7.67 -2.91 -0.02 4.35 16 43 H 0.16 3.25 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -61.54 355.32 1.29 -60.24 By element: Atomic # 1 Polarization: 39.72 SS G_CDS: 0.55 Total: 40.28 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: 4.57 Total: 3.96 kcal Atomic # 7 Polarization: -72.02 SS G_CDS: -2.79 Total: -74.81 kcal Atomic # 8 Polarization: -66.81 SS G_CDS: -3.06 Total: -69.87 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 2.03 Total: 40.21 kcal Total: -61.54 1.29 -60.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577113093.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.640 kcal (2) G-P(sol) polarization free energy of solvation -61.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds