Wall clock time and date at job start Tue Mar 31 2020 11:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00413 * 2 1 4 4 H 1.48495 * 109.47287 * 239.99936 * 3 2 1 5 5 H 1.48504 * 109.47287 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46996 * 119.99741 * 3 2 1 7 7 C 1.37879 * 119.99817 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00415 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99711 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46636 * 179.97438 * 9 7 2 11 11 C 1.53350 * 109.41733 * 295.12332 * 10 9 7 12 12 C 1.53194 * 109.14576 * 178.67740 * 11 10 9 13 13 N 1.46921 * 108.89556 * 54.58069 * 12 11 10 14 14 C 1.34781 * 120.63320 * 126.29208 * 13 12 11 15 15 O 1.21552 * 119.99967 * 354.40583 * 14 13 12 16 16 C 1.47854 * 120.00163 * 174.39746 * 14 13 12 17 17 C 1.39714 * 120.07537 * 324.43343 * 16 14 13 18 18 C 1.38061 * 120.15650 * 179.71815 * 17 16 14 19 19 C 1.38079 * 120.30373 * 0.55330 * 18 17 16 20 20 C 1.39715 * 120.14129 * 359.71838 * 19 18 17 21 21 C 1.47741 * 120.08458 * 179.97438 * 20 19 18 22 22 O 1.21463 * 120.00600 * 180.02562 * 21 20 19 23 23 O 1.34710 * 119.99449 * 0.02660 * 21 20 19 24 24 C 1.39283 * 120.07231 * 144.70138 * 16 14 13 25 25 C 1.46924 * 118.73878 * 306.32281 * 13 12 11 26 26 C 1.53049 * 109.45716 * 175.00037 * 10 9 7 27 27 H 0.96997 * 119.99376 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47148 * 60.00384 * 9 7 2 29 29 H 1.08999 * 109.47255 * 299.99790 * 9 7 2 30 30 H 1.08992 * 109.46141 * 55.02875 * 10 9 7 31 31 H 1.08997 * 109.68589 * 58.71620 * 11 10 9 32 32 H 1.09000 * 109.47788 * 298.51222 * 11 10 9 33 33 H 1.09001 * 109.59025 * 294.72029 * 12 11 10 34 34 H 1.09007 * 109.58395 * 174.44003 * 12 11 10 35 35 H 1.07999 * 119.91632 * 359.96999 * 17 16 14 36 36 H 1.08007 * 119.84679 * 180.27606 * 18 17 16 37 37 H 1.08001 * 119.93249 * 179.70460 * 19 18 17 38 38 H 0.96704 * 116.99863 * 179.97438 * 23 21 20 39 39 H 1.08001 * 120.14972 * 0.02569 * 24 16 14 40 40 H 1.09008 * 109.58875 * 173.39233 * 25 13 12 41 41 H 1.09004 * 109.58368 * 293.66934 * 25 13 12 42 42 H 1.09001 * 109.49380 * 61.43234 * 26 10 9 43 43 H 1.08997 * 109.49272 * 301.33576 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2844 2.7465 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 3.0432 -3.6506 -1.3089 12 6 4.0591 -4.7970 -1.2883 13 7 3.3502 -6.0562 -1.0229 14 6 3.4912 -7.1112 -1.8498 15 8 4.1276 -6.9959 -2.8789 16 6 2.8720 -8.4088 -1.5049 17 6 2.8076 -8.8215 -0.1717 18 6 2.2245 -10.0302 0.1527 19 6 1.7116 -10.8444 -0.8375 20 6 1.7743 -10.4466 -2.1753 21 6 1.2256 -11.3190 -3.2339 22 8 1.2813 -10.9720 -4.3965 23 8 0.6634 -12.4994 -2.9095 24 6 2.3566 -9.2249 -2.5090 25 6 2.4841 -6.1434 0.1607 26 6 1.4838 -4.9838 0.1263 27 1 -0.4849 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6239 -2.5567 0.8903 30 1 2.9288 -3.5554 0.8426 31 1 3.5684 -2.7009 -1.4105 32 1 2.3629 -3.7825 -2.1503 33 1 4.7947 -4.6194 -0.5037 34 1 4.5618 -4.8571 -2.2536 35 1 3.2112 -8.1917 0.6072 36 1 2.1734 -10.3423 1.1855 37 1 1.2610 -11.7909 -0.5773 38 1 0.3178 -13.0356 -3.6363 39 1 2.4081 -8.9127 -3.5417 40 1 1.9455 -7.0911 0.1504 41 1 3.0915 -6.0782 1.0635 42 1 0.8180 -5.1028 -0.7285 43 1 0.8988 -4.9805 1.0460 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581012377.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:31 Heat of formation + Delta-G solvation = -105.498849 kcal Electronic energy + Delta-G solvation = -25928.054372 eV Core-core repulsion = 22130.726784 eV Total energy + Delta-G solvation = -3797.327588 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.01462 -40.26030 -38.54521 -37.32513 -36.45638 -34.20459 -32.54030 -31.85463 -31.55144 -30.51937 -28.13449 -25.33475 -25.04031 -23.90453 -22.69855 -21.97094 -21.45929 -20.21361 -19.14694 -18.27600 -17.77958 -16.88615 -16.41494 -16.22512 -15.99926 -15.80258 -15.43593 -14.80002 -14.54896 -14.46473 -13.94584 -13.71488 -13.70906 -13.35652 -13.13917 -12.93047 -12.78788 -12.39016 -12.12350 -11.95137 -11.87196 -11.68131 -11.21134 -11.08733 -11.00489 -10.79874 -10.71053 -10.45779 -10.25648 -9.92496 -9.68425 -9.51049 -9.39107 -9.25544 -8.99089 -8.44174 -8.36449 -6.01717 -4.03790 0.18329 0.68624 2.04731 2.50942 2.74800 3.01781 3.31641 3.36691 3.38548 3.43962 4.21170 4.38793 4.44037 4.46742 4.68724 4.73407 4.95041 4.99521 5.22617 5.28548 5.33085 5.38696 5.45411 5.51509 5.59695 5.75128 5.78985 5.83775 5.84866 5.91619 6.01069 6.07981 6.25336 6.29899 6.32882 6.48095 6.59964 6.93590 6.97561 7.07708 7.42378 7.49863 7.63316 7.78005 7.97469 8.11832 8.39831 9.02372 9.60204 11.09525 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024327 B = 0.002547 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.713942 B =10991.300457 C =11067.022686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.028 3.972 10 C -0.081 4.081 11 C -0.118 4.118 12 C 0.109 3.891 13 N -0.597 5.597 14 C 0.557 3.443 15 O -0.538 6.538 16 C -0.135 4.135 17 C -0.054 4.054 18 C -0.140 4.140 19 C -0.041 4.041 20 C -0.137 4.137 21 C 0.528 3.472 22 O -0.508 6.508 23 O -0.513 6.513 24 C -0.001 4.001 25 C 0.093 3.907 26 C -0.131 4.131 27 H 0.261 0.739 28 H 0.015 0.985 29 H 0.016 0.984 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.416 0.584 39 H 0.148 0.852 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.104 -24.522 1.795 24.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.009 4.009 10 C -0.100 4.100 11 C -0.156 4.156 12 C -0.013 4.013 13 N -0.329 5.329 14 C 0.345 3.655 15 O -0.416 6.416 16 C -0.138 4.138 17 C -0.072 4.072 18 C -0.158 4.158 19 C -0.060 4.060 20 C -0.138 4.138 21 C 0.372 3.628 22 O -0.396 6.396 23 O -0.325 6.325 24 C -0.020 4.020 25 C -0.029 4.029 26 C -0.169 4.169 27 H 0.070 0.930 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.077 0.923 31 H 0.104 0.896 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.162 0.838 36 H 0.158 0.842 37 H 0.161 0.839 38 H 0.275 0.725 39 H 0.165 0.835 40 H 0.105 0.895 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.464 -23.976 1.254 24.257 hybrid contribution 0.059 0.684 -0.396 0.793 sum 3.523 -23.291 0.858 23.572 Atomic orbital electron populations 1.69952 1.06057 1.26679 1.50821 1.25019 0.94811 0.99201 0.95412 0.86699 0.79615 0.83337 0.78597 1.20243 1.21366 1.20294 1.21197 0.92907 0.90952 1.50512 0.92635 1.19115 0.93574 0.91027 0.97164 1.21258 0.97987 0.94483 0.96230 1.21957 0.97625 0.97206 0.98836 1.21845 0.94891 0.82373 1.02174 1.48056 1.46102 1.12747 1.25983 1.18166 0.80600 0.83466 0.83312 1.90787 1.42182 1.84102 1.24505 1.19894 1.03670 0.96304 0.93927 1.21903 0.94269 0.95625 0.95415 1.21154 1.00115 0.94309 1.00190 1.21643 0.93976 0.99242 0.91114 1.18919 1.06717 0.95674 0.92517 1.20786 0.74544 0.79619 0.87814 1.90930 1.54437 1.73335 1.20947 1.84529 1.71378 1.31447 1.45140 1.21310 0.89985 0.90206 1.00478 1.22327 0.92851 1.00553 0.87217 1.22047 0.97536 0.94895 1.02428 0.92978 0.96645 0.96608 0.92278 0.89604 0.92255 0.91530 0.89464 0.83824 0.84167 0.83944 0.72522 0.83452 0.89507 0.91076 0.91891 0.90880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.46 13.29 55.43 0.74 -25.73 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -13.92 8.39 -34.44 -0.29 -14.21 16 8 H 0.06 1.44 7.06 -52.49 -0.37 1.07 16 9 C 0.03 0.69 4.45 -27.88 -0.12 0.56 16 10 C -0.08 -1.50 2.10 -90.41 -0.19 -1.69 16 11 C -0.12 -2.11 5.21 -26.45 -0.14 -2.24 16 12 C 0.11 1.64 6.43 -3.71 -0.02 1.62 16 13 N -0.60 -8.41 2.97 -173.88 -0.52 -8.92 16 14 C 0.56 8.32 7.38 -12.32 -0.09 8.22 16 15 O -0.54 -9.88 16.24 5.32 0.09 -9.80 16 16 C -0.13 -1.60 5.28 -105.02 -0.55 -2.16 16 17 C -0.05 -0.46 7.35 -39.10 -0.29 -0.75 16 18 C -0.14 -0.93 10.02 -39.70 -0.40 -1.33 16 19 C -0.04 -0.30 9.61 -39.09 -0.38 -0.68 16 20 C -0.14 -1.37 5.87 -105.03 -0.62 -1.99 16 21 C 0.53 5.35 8.27 34.61 0.29 5.63 16 22 O -0.51 -6.85 17.13 -19.24 -0.33 -7.18 16 23 O -0.51 -3.30 12.67 -40.52 -0.51 -3.81 16 24 C 0.00 -0.01 9.15 -38.76 -0.35 -0.36 16 25 C 0.09 1.10 4.78 -3.71 -0.02 1.08 16 26 C -0.13 -1.97 5.36 -26.61 -0.14 -2.12 16 27 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.09 1.63 6.93 -51.93 -0.36 1.27 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.09 1.39 7.00 -51.92 -0.36 1.02 16 35 H 0.14 1.02 6.05 -52.49 -0.32 0.70 16 36 H 0.14 0.53 8.06 -52.48 -0.42 0.11 16 37 H 0.14 0.74 7.60 -52.49 -0.40 0.34 16 38 H 0.42 0.90 9.11 45.56 0.42 1.31 16 39 H 0.15 1.99 7.59 -52.49 -0.40 1.60 16 40 H 0.09 0.85 4.45 -51.92 -0.23 0.62 16 41 H 0.07 0.72 8.05 -51.93 -0.42 0.30 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 355.46 15.07 5.36 5.36 Total: -1.00 -34.52 355.46 -8.57 -43.09 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -4.96 Total: -0.34 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -3.41 Total: -8.93 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: 0.22 Total: -34.65 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.76 Total: -20.79 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.52 -8.57 -43.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581012377.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.407 kcal (2) G-P(sol) polarization free energy of solvation -34.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds