Wall clock time and date at job start Tue Mar 31 2020 11:08:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31519 * 1
3 3 Si 1.86794 * 120.00413 * 2 1
4 4 H 1.48495 * 109.47287 * 239.99936 * 3 2 1
5 5 H 1.48504 * 109.47287 * 0.02562 * 3 2 1
6 6 H 1.48499 * 109.46996 * 119.99741 * 3 2 1
7 7 C 1.37879 * 119.99817 * 179.97438 * 2 1 3
8 8 H 1.07999 * 120.00415 * 180.02562 * 7 2 1
9 9 C 1.50707 * 119.99711 * 0.02562 * 7 2 1
10 10 C 1.53001 * 109.46636 * 179.97438 * 9 7 2
11 11 C 1.53350 * 109.41733 * 295.12332 * 10 9 7
12 12 C 1.53194 * 109.14576 * 178.67740 * 11 10 9
13 13 N 1.46921 * 108.89556 * 54.58069 * 12 11 10
14 14 C 1.34781 * 120.63320 * 126.29208 * 13 12 11
15 15 O 1.21552 * 119.99967 * 354.40583 * 14 13 12
16 16 C 1.47854 * 120.00163 * 174.39746 * 14 13 12
17 17 C 1.39714 * 120.07537 * 324.43343 * 16 14 13
18 18 C 1.38061 * 120.15650 * 179.71815 * 17 16 14
19 19 C 1.38079 * 120.30373 * 0.55330 * 18 17 16
20 20 C 1.39715 * 120.14129 * 359.71838 * 19 18 17
21 21 C 1.47741 * 120.08458 * 179.97438 * 20 19 18
22 22 O 1.21463 * 120.00600 * 180.02562 * 21 20 19
23 23 O 1.34710 * 119.99449 * 0.02660 * 21 20 19
24 24 C 1.39283 * 120.07231 * 144.70138 * 16 14 13
25 25 C 1.46924 * 118.73878 * 306.32281 * 13 12 11
26 26 C 1.53049 * 109.45716 * 175.00037 * 10 9 7
27 27 H 0.96997 * 119.99376 * 0.02562 * 1 2 3
28 28 H 1.08998 * 109.47148 * 60.00384 * 9 7 2
29 29 H 1.08999 * 109.47255 * 299.99790 * 9 7 2
30 30 H 1.08992 * 109.46141 * 55.02875 * 10 9 7
31 31 H 1.08997 * 109.68589 * 58.71620 * 11 10 9
32 32 H 1.09000 * 109.47788 * 298.51222 * 11 10 9
33 33 H 1.09001 * 109.59025 * 294.72029 * 12 11 10
34 34 H 1.09007 * 109.58395 * 174.44003 * 12 11 10
35 35 H 1.07999 * 119.91632 * 359.96999 * 17 16 14
36 36 H 1.08007 * 119.84679 * 180.27606 * 18 17 16
37 37 H 1.08001 * 119.93249 * 179.70460 * 19 18 17
38 38 H 0.96704 * 116.99863 * 179.97438 * 23 21 20
39 39 H 1.08001 * 120.14972 * 0.02569 * 24 16 14
40 40 H 1.09008 * 109.58875 * 173.39233 * 25 13 12
41 41 H 1.09004 * 109.58368 * 293.66934 * 25 13 12
42 42 H 1.09001 * 109.49380 * 61.43234 * 26 10 9
43 43 H 1.08997 * 109.49272 * 301.33576 * 26 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2493 1.6176 0.0000
4 1 3.1030 1.6963 -1.2124
5 1 1.2844 2.7465 0.0006
6 1 3.1030 1.6962 1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1942 0.0010
9 6 1.2509 -2.4992 0.0005
10 6 2.2452 -3.6621 0.0005
11 6 3.0432 -3.6506 -1.3089
12 6 4.0591 -4.7970 -1.2883
13 7 3.3502 -6.0562 -1.0229
14 6 3.4912 -7.1112 -1.8498
15 8 4.1276 -6.9959 -2.8789
16 6 2.8720 -8.4088 -1.5049
17 6 2.8076 -8.8215 -0.1717
18 6 2.2245 -10.0302 0.1527
19 6 1.7116 -10.8444 -0.8375
20 6 1.7743 -10.4466 -2.1753
21 6 1.2256 -11.3190 -3.2339
22 8 1.2813 -10.9720 -4.3965
23 8 0.6634 -12.4994 -2.9095
24 6 2.3566 -9.2249 -2.5090
25 6 2.4841 -6.1434 0.1607
26 6 1.4838 -4.9838 0.1263
27 1 -0.4849 0.8401 -0.0004
28 1 0.6246 -2.5571 -0.8897
29 1 0.6239 -2.5567 0.8903
30 1 2.9288 -3.5554 0.8426
31 1 3.5684 -2.7009 -1.4105
32 1 2.3629 -3.7825 -2.1503
33 1 4.7947 -4.6194 -0.5037
34 1 4.5618 -4.8571 -2.2536
35 1 3.2112 -8.1917 0.6072
36 1 2.1734 -10.3423 1.1855
37 1 1.2610 -11.7909 -0.5773
38 1 0.3178 -13.0356 -3.6363
39 1 2.4081 -8.9127 -3.5417
40 1 1.9455 -7.0911 0.1504
41 1 3.0915 -6.0782 1.0635
42 1 0.8180 -5.1028 -0.7285
43 1 0.8988 -4.9805 1.0460
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000581012377.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:08:31
Heat of formation + Delta-G solvation = -105.498849 kcal
Electronic energy + Delta-G solvation = -25928.054372 eV
Core-core repulsion = 22130.726784 eV
Total energy + Delta-G solvation = -3797.327588 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 317.146 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-41.01462 -40.26030 -38.54521 -37.32513 -36.45638 -34.20459 -32.54030 -31.85463
-31.55144 -30.51937 -28.13449 -25.33475 -25.04031 -23.90453 -22.69855 -21.97094
-21.45929 -20.21361 -19.14694 -18.27600 -17.77958 -16.88615 -16.41494 -16.22512
-15.99926 -15.80258 -15.43593 -14.80002 -14.54896 -14.46473 -13.94584 -13.71488
-13.70906 -13.35652 -13.13917 -12.93047 -12.78788 -12.39016 -12.12350 -11.95137
-11.87196 -11.68131 -11.21134 -11.08733 -11.00489 -10.79874 -10.71053 -10.45779
-10.25648 -9.92496 -9.68425 -9.51049 -9.39107 -9.25544 -8.99089 -8.44174
-8.36449 -6.01717 -4.03790 0.18329 0.68624 2.04731 2.50942 2.74800
3.01781 3.31641 3.36691 3.38548 3.43962 4.21170 4.38793 4.44037
4.46742 4.68724 4.73407 4.95041 4.99521 5.22617 5.28548 5.33085
5.38696 5.45411 5.51509 5.59695 5.75128 5.78985 5.83775 5.84866
5.91619 6.01069 6.07981 6.25336 6.29899 6.32882 6.48095 6.59964
6.93590 6.97561 7.07708 7.42378 7.49863 7.63316 7.78005 7.97469
8.11832 8.39831 9.02372 9.60204 11.09525
Molecular weight = 317.15amu
Principal moments of inertia in cm(-1)
A = 0.024327 B = 0.002547 C = 0.002529
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1150.713942 B =10991.300457 C =11067.022686
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.896 5.896
2 C 0.057 3.943
3 Si 0.890 3.110
4 H -0.277 1.277
5 H -0.288 1.288
6 H -0.277 1.277
7 C -0.517 4.517
8 H 0.055 0.945
9 C 0.028 3.972
10 C -0.081 4.081
11 C -0.118 4.118
12 C 0.109 3.891
13 N -0.597 5.597
14 C 0.557 3.443
15 O -0.538 6.538
16 C -0.135 4.135
17 C -0.054 4.054
18 C -0.140 4.140
19 C -0.041 4.041
20 C -0.137 4.137
21 C 0.528 3.472
22 O -0.508 6.508
23 O -0.513 6.513
24 C -0.001 4.001
25 C 0.093 3.907
26 C -0.131 4.131
27 H 0.261 0.739
28 H 0.015 0.985
29 H 0.016 0.984
30 H 0.059 0.941
31 H 0.086 0.914
32 H 0.059 0.941
33 H 0.066 0.934
34 H 0.087 0.913
35 H 0.144 0.856
36 H 0.141 0.859
37 H 0.143 0.857
38 H 0.416 0.584
39 H 0.148 0.852
40 H 0.087 0.913
41 H 0.071 0.929
42 H 0.062 0.938
43 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.104 -24.522 1.795 24.783
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.535 5.535
2 C -0.144 4.144
3 Si 0.718 3.282
4 H -0.202 1.202
5 H -0.214 1.214
6 H -0.203 1.203
7 C -0.556 4.556
8 H 0.074 0.926
9 C -0.009 4.009
10 C -0.100 4.100
11 C -0.156 4.156
12 C -0.013 4.013
13 N -0.329 5.329
14 C 0.345 3.655
15 O -0.416 6.416
16 C -0.138 4.138
17 C -0.072 4.072
18 C -0.158 4.158
19 C -0.060 4.060
20 C -0.138 4.138
21 C 0.372 3.628
22 O -0.396 6.396
23 O -0.325 6.325
24 C -0.020 4.020
25 C -0.029 4.029
26 C -0.169 4.169
27 H 0.070 0.930
28 H 0.034 0.966
29 H 0.034 0.966
30 H 0.077 0.923
31 H 0.104 0.896
32 H 0.077 0.923
33 H 0.085 0.915
34 H 0.105 0.895
35 H 0.162 0.838
36 H 0.158 0.842
37 H 0.161 0.839
38 H 0.275 0.725
39 H 0.165 0.835
40 H 0.105 0.895
41 H 0.089 0.911
42 H 0.081 0.919
43 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges 3.464 -23.976 1.254 24.257
hybrid contribution 0.059 0.684 -0.396 0.793
sum 3.523 -23.291 0.858 23.572
Atomic orbital electron populations
1.69952 1.06057 1.26679 1.50821 1.25019 0.94811 0.99201 0.95412
0.86699 0.79615 0.83337 0.78597 1.20243 1.21366 1.20294 1.21197
0.92907 0.90952 1.50512 0.92635 1.19115 0.93574 0.91027 0.97164
1.21258 0.97987 0.94483 0.96230 1.21957 0.97625 0.97206 0.98836
1.21845 0.94891 0.82373 1.02174 1.48056 1.46102 1.12747 1.25983
1.18166 0.80600 0.83466 0.83312 1.90787 1.42182 1.84102 1.24505
1.19894 1.03670 0.96304 0.93927 1.21903 0.94269 0.95625 0.95415
1.21154 1.00115 0.94309 1.00190 1.21643 0.93976 0.99242 0.91114
1.18919 1.06717 0.95674 0.92517 1.20786 0.74544 0.79619 0.87814
1.90930 1.54437 1.73335 1.20947 1.84529 1.71378 1.31447 1.45140
1.21310 0.89985 0.90206 1.00478 1.22327 0.92851 1.00553 0.87217
1.22047 0.97536 0.94895 1.02428 0.92978 0.96645 0.96608 0.92278
0.89604 0.92255 0.91530 0.89464 0.83824 0.84167 0.83944 0.72522
0.83452 0.89507 0.91076 0.91891 0.90880
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.46 13.29 55.43 0.74 -25.73 16
2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16
3 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16
4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
5 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16
6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16
7 C -0.52 -13.92 8.39 -34.44 -0.29 -14.21 16
8 H 0.06 1.44 7.06 -52.49 -0.37 1.07 16
9 C 0.03 0.69 4.45 -27.88 -0.12 0.56 16
10 C -0.08 -1.50 2.10 -90.41 -0.19 -1.69 16
11 C -0.12 -2.11 5.21 -26.45 -0.14 -2.24 16
12 C 0.11 1.64 6.43 -3.71 -0.02 1.62 16
13 N -0.60 -8.41 2.97 -173.88 -0.52 -8.92 16
14 C 0.56 8.32 7.38 -12.32 -0.09 8.22 16
15 O -0.54 -9.88 16.24 5.32 0.09 -9.80 16
16 C -0.13 -1.60 5.28 -105.02 -0.55 -2.16 16
17 C -0.05 -0.46 7.35 -39.10 -0.29 -0.75 16
18 C -0.14 -0.93 10.02 -39.70 -0.40 -1.33 16
19 C -0.04 -0.30 9.61 -39.09 -0.38 -0.68 16
20 C -0.14 -1.37 5.87 -105.03 -0.62 -1.99 16
21 C 0.53 5.35 8.27 34.61 0.29 5.63 16
22 O -0.51 -6.85 17.13 -19.24 -0.33 -7.18 16
23 O -0.51 -3.30 12.67 -40.52 -0.51 -3.81 16
24 C 0.00 -0.01 9.15 -38.76 -0.35 -0.36 16
25 C 0.09 1.10 4.78 -3.71 -0.02 1.08 16
26 C -0.13 -1.97 5.36 -26.61 -0.14 -2.12 16
27 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16
28 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16
29 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16
30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16
31 H 0.09 1.63 6.93 -51.93 -0.36 1.27 16
32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16
33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16
34 H 0.09 1.39 7.00 -51.92 -0.36 1.02 16
35 H 0.14 1.02 6.05 -52.49 -0.32 0.70 16
36 H 0.14 0.53 8.06 -52.48 -0.42 0.11 16
37 H 0.14 0.74 7.60 -52.49 -0.40 0.34 16
38 H 0.42 0.90 9.11 45.56 0.42 1.31 16
39 H 0.15 1.99 7.59 -52.49 -0.40 1.60 16
40 H 0.09 0.85 4.45 -51.92 -0.23 0.62 16
41 H 0.07 0.72 8.05 -51.93 -0.42 0.30 16
42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16
43 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16
LS Contribution 355.46 15.07 5.36 5.36
Total: -1.00 -34.52 355.46 -8.57 -43.09
By element:
Atomic # 1 Polarization: 4.62 SS G_CDS: -4.96 Total: -0.34 kcal
Atomic # 6 Polarization: -5.51 SS G_CDS: -3.41 Total: -8.93 kcal
Atomic # 7 Polarization: -34.87 SS G_CDS: 0.22 Total: -34.65 kcal
Atomic # 8 Polarization: -20.03 SS G_CDS: -0.76 Total: -20.79 kcal
Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal
Total LS contribution 5.36 Total: 5.36 kcal
Total: -34.52 -8.57 -43.09 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000581012377.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -62.407 kcal
(2) G-P(sol) polarization free energy of solvation -34.517 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.925 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.091 kcal
(6) G-S(sol) free energy of system = (1) + (5) -105.499 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds