Wall clock time and date at job start Tue Mar 31 2020 11:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86800 * 120.00059 * 2 1 4 4 H 1.48502 * 109.47507 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46985 * 299.99337 * 3 2 1 6 6 H 1.48501 * 109.47334 * 59.99503 * 3 2 1 7 7 C 1.39938 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00159 * 162.60260 * 7 2 1 9 9 C 1.41432 * 120.00281 * 342.59999 * 7 2 1 10 10 C 1.40782 * 120.17898 * 154.91252 * 9 7 2 11 11 C 1.37713 * 120.04192 * 180.02562 * 10 9 7 12 12 C 1.38376 * 120.41002 * 359.79301 * 11 10 9 13 13 C 1.39882 * 120.35896 * 0.46141 * 12 11 10 14 14 C 1.47883 * 120.02477 * 179.79069 * 13 12 11 15 15 O 1.21549 * 119.99605 * 179.72635 * 14 13 12 16 16 N 1.34768 * 120.00303 * 359.72817 * 14 13 12 17 17 C 1.46497 * 120.00316 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.47401 * 179.97438 * 17 16 14 19 19 H 1.09003 * 109.47156 * 305.00167 * 18 17 16 20 20 C 1.53003 * 109.47352 * 185.00264 * 18 17 16 21 21 C 1.52996 * 109.46912 * 175.00081 * 20 18 17 22 22 C 1.53002 * 117.49493 * 243.61710 * 21 20 18 23 23 C 1.53008 * 117.49315 * 174.99655 * 21 20 18 24 24 C 1.50697 * 109.47171 * 65.00104 * 18 17 16 25 25 O 1.20825 * 119.99854 * 359.97438 * 24 18 17 26 26 O 1.34228 * 120.00290 * 180.02562 * 24 18 17 27 27 C 1.39031 * 119.94709 * 359.51772 * 13 12 11 28 28 H 0.96996 * 119.99976 * 0.02562 * 1 2 3 29 29 H 1.08000 * 119.98373 * 0.02562 * 10 9 7 30 30 H 1.08003 * 119.79791 * 180.02562 * 11 10 9 31 31 H 1.08000 * 119.82033 * 180.23448 * 12 11 10 32 32 H 0.97005 * 119.99978 * 359.97438 * 16 14 13 33 33 H 1.08997 * 109.47361 * 299.99949 * 17 16 14 34 34 H 1.09007 * 109.47245 * 60.00121 * 17 16 14 35 35 H 1.09001 * 109.46733 * 294.99958 * 20 18 17 36 36 H 1.08996 * 109.46848 * 54.99695 * 20 18 17 37 37 H 1.08997 * 115.55405 * 29.33088 * 21 20 18 38 38 H 1.08999 * 117.50200 * 0.02562 * 22 21 20 39 39 H 1.09003 * 117.49608 * 145.02525 * 22 21 20 40 40 H 1.09003 * 117.49664 * 214.97390 * 23 21 20 41 41 H 1.08997 * 117.50258 * 359.97438 * 23 21 20 42 42 H 0.96694 * 117.00415 * 179.97438 * 26 24 18 43 43 H 1.08003 * 120.20175 * 180.22664 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3465 0.0006 5 1 1.8836 2.3964 -1.2126 6 1 1.8835 2.3965 1.2124 7 6 2.0079 -1.2119 0.0005 8 1 3.0509 -1.2334 -0.2791 9 6 1.3494 -2.4086 0.3673 10 6 1.8189 -3.6485 -0.1060 11 6 1.1752 -4.8119 0.2525 12 6 0.0680 -4.7729 1.0815 13 6 -0.4162 -3.5499 1.5573 14 6 -1.6029 -3.5165 2.4392 15 8 -2.0202 -2.4538 2.8564 16 7 -2.2216 -4.6641 2.7802 17 6 -3.3968 -4.6311 3.6543 18 6 -3.9029 -6.0568 3.8827 19 1 -4.0898 -6.5344 2.9209 20 6 -5.2009 -6.0138 4.6916 21 6 -5.7728 -7.4276 4.8134 22 6 -7.1328 -7.6976 4.1664 23 6 -7.0132 -7.6147 5.6896 24 6 -2.8644 -6.8431 4.6405 25 8 -1.8259 -6.3172 4.9643 26 8 -3.0928 -8.1279 4.9550 27 6 0.2225 -2.3663 1.2052 28 1 -0.4850 0.8400 -0.0004 29 1 2.6845 -3.6874 -0.7508 30 1 1.5390 -5.7610 -0.1126 31 1 -0.4273 -5.6915 1.3597 32 1 -1.8887 -5.5122 2.4470 33 1 -3.1259 -4.1838 4.6106 34 1 -4.1820 -4.0380 3.1852 35 1 -4.9961 -5.6177 5.6862 36 1 -5.9227 -5.3721 4.1864 37 1 -5.0397 -8.2341 4.8002 38 1 -7.6197 -6.8682 3.6536 39 1 -7.2945 -8.6820 3.7272 40 1 -7.0963 -8.5446 6.2523 41 1 -7.4214 -6.7307 6.1794 42 1 -2.3971 -8.5911 5.4413 43 1 -0.1457 -1.4200 1.5732 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583208644.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:33 Heat of formation + Delta-G solvation = -95.939863 kcal Electronic energy + Delta-G solvation = -25725.645354 eV Core-core repulsion = 21928.732275 eV Total energy + Delta-G solvation = -3796.913079 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.78390 -39.05574 -37.90064 -37.04136 -36.38747 -34.98871 -33.72141 -32.45268 -30.09859 -29.40055 -26.79585 -25.28824 -24.73234 -22.67127 -22.38166 -21.10215 -20.76540 -20.56240 -19.40176 -18.29290 -17.71068 -17.13579 -16.45727 -16.09633 -15.34491 -15.31237 -15.05061 -14.68196 -14.48977 -14.35347 -13.88484 -13.66291 -13.21002 -12.93921 -12.74307 -12.48893 -12.45543 -12.38629 -11.87545 -11.77434 -11.70840 -11.58561 -11.31346 -11.13761 -11.05271 -10.70217 -10.60503 -10.47533 -10.45839 -10.20357 -9.99102 -9.65588 -9.19516 -8.98797 -8.62657 -7.59167 -7.48396 -6.77069 -4.38355 2.04731 2.25274 2.77384 2.83561 3.10017 3.15025 3.17292 3.47255 3.63070 3.91570 3.95269 4.22389 4.44230 4.55319 4.64600 4.67740 4.83711 4.97525 5.14104 5.27794 5.35279 5.45155 5.51590 5.60462 5.61893 5.64866 5.80165 5.83367 5.95268 6.11282 6.15683 6.30214 6.32413 6.74251 6.85054 7.01816 7.05047 7.24239 7.41474 7.72695 7.73195 7.78814 7.95386 8.11463 8.21970 8.53906 8.83450 8.86679 8.99250 10.17903 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023113 B = 0.002689 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.130760 B =10409.316949 C =11083.112396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.073 3.927 3 Si 0.909 3.091 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.460 4.460 8 H 0.081 0.919 9 C 0.098 3.902 10 C -0.211 4.211 11 C -0.099 4.099 12 C -0.215 4.215 13 C -0.126 4.126 14 C 0.567 3.433 15 O -0.547 6.547 16 N -0.731 5.731 17 C 0.135 3.865 18 C -0.088 4.088 19 H 0.117 0.883 20 C -0.078 4.078 21 C -0.163 4.163 22 C -0.181 4.181 23 C -0.182 4.182 24 C 0.476 3.524 25 O -0.493 6.493 26 O -0.514 6.514 27 C -0.092 4.092 28 H 0.284 0.716 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.397 0.603 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.130 0.870 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.406 0.594 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.906 -14.552 8.121 20.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.489 4.489 8 H 0.099 0.901 9 C 0.096 3.904 10 C -0.231 4.231 11 C -0.117 4.117 12 C -0.235 4.235 13 C -0.129 4.129 14 C 0.358 3.642 15 O -0.425 6.425 16 N -0.384 5.384 17 C 0.011 3.989 18 C -0.108 4.108 19 H 0.135 0.865 20 C -0.116 4.116 21 C -0.181 4.181 22 C -0.218 4.218 23 C -0.219 4.219 24 C 0.317 3.683 25 O -0.379 6.379 26 O -0.327 6.327 27 C -0.112 4.112 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.232 0.768 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.148 0.852 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.265 0.735 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.438 -13.243 8.295 19.972 hybrid contribution 0.891 -0.141 0.115 0.910 sum -11.546 -13.384 8.409 19.574 Atomic orbital electron populations 1.69796 1.07562 1.29612 1.33888 1.25962 0.94777 1.01531 0.92335 0.86241 0.80880 0.80865 0.78646 1.18362 1.19941 1.19572 1.19605 0.98049 0.90984 1.40255 0.90066 1.17610 0.91216 0.92485 0.89133 1.21097 1.03436 0.92816 1.05716 1.20429 0.96110 0.96723 0.98446 1.20321 1.01422 0.94584 1.07187 1.19457 0.96562 0.95294 1.01617 1.18776 0.83134 0.82653 0.79630 1.90690 1.66360 1.30079 1.55389 1.45789 1.31009 1.09895 1.51752 1.21120 0.88893 0.92743 0.96138 1.21439 0.93487 0.95436 1.00419 0.86483 1.21099 0.94105 0.96082 1.00346 1.22711 0.91706 0.98691 1.04984 1.23053 1.00241 1.03074 0.95439 1.22944 1.02251 1.03148 0.93513 1.23419 0.87347 0.80255 0.77318 1.90835 1.27085 1.70030 1.49933 1.84529 1.50762 1.26173 1.71265 1.21632 0.96422 0.96418 0.96722 0.90535 0.88616 0.88948 0.89480 0.76809 0.90806 0.90152 0.90579 0.89595 0.85204 0.88751 0.88900 0.88923 0.88908 0.73515 0.84842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -21.04 10.97 55.55 0.61 -20.43 16 2 C 0.07 1.87 5.14 -17.34 -0.09 1.78 16 3 Si 0.91 19.06 29.59 -169.99 -5.03 14.03 16 4 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.46 -12.28 9.05 -37.73 -0.34 -12.62 16 8 H 0.08 2.06 7.90 -52.48 -0.41 1.65 16 9 C 0.10 2.65 5.57 -106.87 -0.59 2.05 16 10 C -0.21 -5.11 9.78 -38.81 -0.38 -5.49 16 11 C -0.10 -2.17 10.01 -39.72 -0.40 -2.57 16 12 C -0.22 -4.70 9.55 -38.92 -0.37 -5.07 16 13 C -0.13 -3.08 5.87 -105.04 -0.62 -3.70 16 14 C 0.57 12.88 7.77 -12.32 -0.10 12.79 16 15 O -0.55 -14.06 16.33 5.32 0.09 -13.98 16 16 N -0.73 -12.61 4.76 -61.24 -0.29 -12.90 16 17 C 0.14 1.86 4.63 -4.04 -0.02 1.84 16 18 C -0.09 -0.86 2.37 -91.77 -0.22 -1.07 16 19 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 20 C -0.08 -0.61 4.95 -26.73 -0.13 -0.74 16 21 C -0.16 -1.19 5.44 -90.62 -0.49 -1.68 16 22 C -0.18 -1.21 10.18 -26.73 -0.27 -1.48 16 23 C -0.18 -1.21 10.25 -26.72 -0.27 -1.48 16 24 C 0.48 5.15 7.28 36.00 0.26 5.41 16 25 O -0.49 -7.46 16.05 -18.75 -0.30 -7.76 16 26 O -0.51 -3.86 10.51 -39.25 -0.41 -4.27 16 27 C -0.09 -2.51 8.23 -38.44 -0.32 -2.83 16 28 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 29 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 30 H 0.09 1.72 8.06 -52.48 -0.42 1.29 16 31 H 0.09 1.60 6.38 -52.49 -0.33 1.27 16 32 H 0.40 6.18 6.17 -40.82 -0.25 5.92 16 33 H 0.07 1.13 7.96 -51.93 -0.41 0.72 16 34 H 0.08 1.06 8.14 -51.92 -0.42 0.64 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 0.60 7.87 -51.93 -0.41 0.19 16 37 H 0.13 0.99 5.24 -51.93 -0.27 0.72 16 38 H 0.09 0.60 8.03 -51.93 -0.42 0.18 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.41 1.66 9.10 45.56 0.41 2.07 16 43 H 0.13 3.94 5.76 -52.48 -0.30 3.63 16 LS Contribution 363.29 15.07 5.47 5.47 Total: -1.00 -33.13 363.29 -9.13 -42.26 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -4.92 Total: 12.44 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -4.35 Total: -14.87 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 0.32 Total: -33.33 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.63 Total: -26.01 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.13 -9.13 -42.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583208644.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.678 kcal (2) G-P(sol) polarization free energy of solvation -33.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds