Wall clock time and date at job start Tue Mar 31 2020 11:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86800 * 120.00059 * 2 1 4 4 H 1.48502 * 109.47507 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46985 * 299.99337 * 3 2 1 6 6 H 1.48501 * 109.47334 * 59.99503 * 3 2 1 7 7 C 1.39938 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00159 * 162.60260 * 7 2 1 9 9 C 1.41432 * 120.00281 * 342.59999 * 7 2 1 10 10 C 1.40782 * 120.17898 * 154.91252 * 9 7 2 11 11 C 1.37713 * 120.04192 * 180.02562 * 10 9 7 12 12 C 1.38376 * 120.41002 * 359.79301 * 11 10 9 13 13 C 1.39882 * 120.35896 * 0.46141 * 12 11 10 14 14 C 1.47883 * 120.02477 * 179.79069 * 13 12 11 15 15 O 1.21549 * 119.99605 * 179.72635 * 14 13 12 16 16 N 1.34768 * 120.00303 * 359.72817 * 14 13 12 17 17 C 1.46497 * 120.00316 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.47401 * 179.97438 * 17 16 14 19 19 H 1.09003 * 109.47156 * 305.00167 * 18 17 16 20 20 C 1.53003 * 109.47352 * 185.00264 * 18 17 16 21 21 C 1.52996 * 109.46912 * 175.00081 * 20 18 17 22 22 C 1.53002 * 117.49493 * 243.61710 * 21 20 18 23 23 C 1.53008 * 117.49315 * 174.99655 * 21 20 18 24 24 C 1.50697 * 109.47171 * 65.00104 * 18 17 16 25 25 O 1.20825 * 119.99854 * 359.97438 * 24 18 17 26 26 O 1.34228 * 120.00290 * 180.02562 * 24 18 17 27 27 C 1.39031 * 119.94709 * 359.51772 * 13 12 11 28 28 H 0.96996 * 119.99976 * 0.02562 * 1 2 3 29 29 H 1.08000 * 119.98373 * 0.02562 * 10 9 7 30 30 H 1.08003 * 119.79791 * 180.02562 * 11 10 9 31 31 H 1.08000 * 119.82033 * 180.23448 * 12 11 10 32 32 H 0.97005 * 119.99978 * 359.97438 * 16 14 13 33 33 H 1.08997 * 109.47361 * 299.99949 * 17 16 14 34 34 H 1.09007 * 109.47245 * 60.00121 * 17 16 14 35 35 H 1.09001 * 109.46733 * 294.99958 * 20 18 17 36 36 H 1.08996 * 109.46848 * 54.99695 * 20 18 17 37 37 H 1.08997 * 115.55405 * 29.33088 * 21 20 18 38 38 H 1.08999 * 117.50200 * 0.02562 * 22 21 20 39 39 H 1.09003 * 117.49608 * 145.02525 * 22 21 20 40 40 H 1.09003 * 117.49664 * 214.97390 * 23 21 20 41 41 H 1.08997 * 117.50258 * 359.97438 * 23 21 20 42 42 H 0.96694 * 117.00415 * 179.97438 * 26 24 18 43 43 H 1.08003 * 120.20175 * 180.22664 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3465 0.0006 5 1 1.8836 2.3964 -1.2126 6 1 1.8835 2.3965 1.2124 7 6 2.0079 -1.2119 0.0005 8 1 3.0509 -1.2334 -0.2791 9 6 1.3494 -2.4086 0.3673 10 6 1.8189 -3.6485 -0.1060 11 6 1.1752 -4.8119 0.2525 12 6 0.0680 -4.7729 1.0815 13 6 -0.4162 -3.5499 1.5573 14 6 -1.6029 -3.5165 2.4392 15 8 -2.0202 -2.4538 2.8564 16 7 -2.2216 -4.6641 2.7802 17 6 -3.3968 -4.6311 3.6543 18 6 -3.9029 -6.0568 3.8827 19 1 -4.0898 -6.5344 2.9209 20 6 -5.2009 -6.0138 4.6916 21 6 -5.7728 -7.4276 4.8134 22 6 -7.1328 -7.6976 4.1664 23 6 -7.0132 -7.6147 5.6896 24 6 -2.8644 -6.8431 4.6405 25 8 -1.8259 -6.3172 4.9643 26 8 -3.0928 -8.1279 4.9550 27 6 0.2225 -2.3663 1.2052 28 1 -0.4850 0.8400 -0.0004 29 1 2.6845 -3.6874 -0.7508 30 1 1.5390 -5.7610 -0.1126 31 1 -0.4273 -5.6915 1.3597 32 1 -1.8887 -5.5122 2.4470 33 1 -3.1259 -4.1838 4.6106 34 1 -4.1820 -4.0380 3.1852 35 1 -4.9961 -5.6177 5.6862 36 1 -5.9227 -5.3721 4.1864 37 1 -5.0397 -8.2341 4.8002 38 1 -7.6197 -6.8682 3.6536 39 1 -7.2945 -8.6820 3.7272 40 1 -7.0963 -8.5446 6.2523 41 1 -7.4214 -6.7307 6.1794 42 1 -2.3971 -8.5911 5.4413 43 1 -0.1457 -1.4200 1.5732 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583208644.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:32 Heat of formation + Delta-G solvation = -116.812961 kcal Electronic energy + Delta-G solvation = -25726.550480 eV Core-core repulsion = 21928.732275 eV Total energy + Delta-G solvation = -3797.818205 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.71612 -40.71363 -38.86897 -38.47302 -37.29388 -36.20134 -35.59516 -33.69777 -31.88028 -31.28192 -27.93500 -27.07727 -25.72322 -24.01780 -23.14959 -22.81941 -21.81845 -21.48825 -20.88093 -19.49857 -19.10293 -18.07946 -17.89875 -17.36200 -16.89189 -16.58068 -16.40790 -16.00479 -15.92281 -15.47449 -15.05184 -14.96333 -14.76332 -14.40105 -14.27235 -13.88800 -13.61841 -13.46551 -13.27314 -12.95998 -12.79630 -12.68686 -12.53898 -12.51978 -12.26523 -12.18779 -11.98402 -11.90634 -11.51261 -11.49665 -11.08661 -11.05600 -10.80598 -10.71550 -10.16647 -9.47652 -9.39571 -8.66780 -6.38660 0.37172 0.99341 1.19961 1.36198 1.46213 1.52673 2.02520 2.10434 2.19423 2.20122 2.78483 2.98676 3.33507 3.68773 3.70960 3.92082 4.02445 4.07817 4.17369 4.33278 4.38973 4.40767 4.56556 4.57873 4.70083 4.71749 4.87378 4.90110 4.92056 5.01738 5.08242 5.13957 5.17806 5.30321 5.35691 5.40954 5.51132 5.58391 5.64398 5.85042 5.91048 6.04320 6.27006 6.47691 6.64988 6.87336 6.93691 7.01228 7.28255 8.30527 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023113 B = 0.002689 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.130760 B =10409.316949 C =11083.112396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.028 3.972 3 Si 0.984 3.016 4 H -0.252 1.252 5 H -0.262 1.262 6 H -0.271 1.271 7 C -0.496 4.496 8 H 0.084 0.916 9 C 0.066 3.934 10 C -0.216 4.216 11 C -0.096 4.096 12 C -0.198 4.198 13 C -0.139 4.139 14 C 0.561 3.439 15 O -0.589 6.589 16 N -0.708 5.708 17 C 0.131 3.869 18 C -0.077 4.077 19 H 0.141 0.859 20 C -0.074 4.074 21 C -0.167 4.167 22 C -0.180 4.180 23 C -0.183 4.183 24 C 0.484 3.516 25 O -0.543 6.543 26 O -0.499 6.499 27 C -0.131 4.131 28 H 0.287 0.713 29 H 0.110 0.890 30 H 0.139 0.861 31 H 0.130 0.870 32 H 0.408 0.592 33 H 0.055 0.945 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.130 0.870 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.423 0.577 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.502 -17.265 7.982 22.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.187 4.187 3 Si 0.804 3.196 4 H -0.175 1.175 5 H -0.187 1.187 6 H -0.196 1.196 7 C -0.525 4.525 8 H 0.102 0.898 9 C 0.064 3.936 10 C -0.236 4.236 11 C -0.114 4.114 12 C -0.218 4.218 13 C -0.142 4.142 14 C 0.351 3.649 15 O -0.470 6.470 16 N -0.360 5.360 17 C 0.008 3.992 18 C -0.096 4.096 19 H 0.159 0.841 20 C -0.112 4.112 21 C -0.185 4.185 22 C -0.216 4.216 23 C -0.220 4.220 24 C 0.328 3.672 25 O -0.432 6.432 26 O -0.313 6.313 27 C -0.152 4.152 28 H 0.097 0.903 29 H 0.128 0.872 30 H 0.157 0.843 31 H 0.148 0.852 32 H 0.245 0.755 33 H 0.073 0.927 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.115 0.885 37 H 0.147 0.853 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.112 0.888 42 H 0.285 0.715 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.056 -16.054 8.161 22.244 hybrid contribution 0.989 0.431 0.223 1.102 sum -12.067 -15.623 8.384 21.447 Atomic orbital electron populations 1.69892 1.09240 1.30569 1.35331 1.26876 0.95455 1.05004 0.91347 0.85139 0.79629 0.76042 0.78795 1.17466 1.18686 1.19614 1.19878 0.98409 0.92111 1.42145 0.89758 1.17971 0.91773 0.94030 0.89817 1.21410 1.03889 0.92766 1.05505 1.20918 0.95315 0.97783 0.97345 1.20794 1.00816 0.94959 1.05219 1.19786 0.97076 0.95551 1.01766 1.18683 0.83113 0.83503 0.79583 1.90661 1.67457 1.31909 1.57015 1.45599 1.31038 1.08576 1.50766 1.21311 0.87561 0.95874 0.94496 1.21366 0.93732 0.92668 1.01867 0.84137 1.21084 0.93209 0.96961 0.99902 1.22629 0.91978 0.97971 1.05900 1.23128 0.99507 1.03571 0.95435 1.23019 1.01657 1.03560 0.93769 1.23522 0.86484 0.80895 0.76349 1.90836 1.29091 1.71175 1.52144 1.84487 1.51302 1.24578 1.70909 1.21440 0.98323 0.96343 0.99051 0.90277 0.87177 0.84332 0.85245 0.75531 0.92679 0.89412 0.91007 0.88505 0.85274 0.88433 0.88284 0.88326 0.88772 0.71453 0.88295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.75 10.97 21.82 0.24 -46.51 16 2 C 0.03 1.49 5.14 85.25 0.44 1.93 16 3 Si 0.98 40.37 29.59 68.60 2.03 42.40 16 4 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 5 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 6 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 7 C -0.50 -27.58 9.05 23.47 0.21 -27.36 16 8 H 0.08 4.42 7.90 -2.91 -0.02 4.40 16 9 C 0.07 3.71 5.57 -21.32 -0.12 3.59 16 10 C -0.22 -10.35 9.78 22.77 0.22 -10.13 16 11 C -0.10 -3.93 10.01 22.18 0.22 -3.71 16 12 C -0.20 -8.20 9.55 22.70 0.22 -7.98 16 13 C -0.14 -6.86 5.87 -20.14 -0.12 -6.98 16 14 C 0.56 25.93 7.77 86.80 0.67 26.60 16 15 O -0.59 -31.68 16.33 -3.87 -0.06 -31.74 16 16 N -0.71 -23.68 4.76 -465.95 -2.22 -25.90 16 17 C 0.13 3.48 4.63 86.38 0.40 3.88 16 18 C -0.08 -1.31 2.37 -11.54 -0.03 -1.34 16 19 H 0.14 1.81 8.14 -2.39 -0.02 1.79 16 20 C -0.07 -0.98 4.95 30.59 0.15 -0.83 16 21 C -0.17 -1.97 5.44 -10.79 -0.06 -2.03 16 22 C -0.18 -1.90 10.18 30.60 0.31 -1.59 16 23 C -0.18 -2.00 10.25 30.60 0.31 -1.68 16 24 C 0.48 9.41 7.28 71.24 0.52 9.93 16 25 O -0.54 -15.78 16.05 21.97 0.35 -15.43 16 26 O -0.50 -5.95 10.51 -51.40 -0.54 -6.49 16 27 C -0.13 -7.52 8.23 23.01 0.19 -7.33 16 28 H 0.29 14.90 8.30 -92.71 -0.77 14.13 16 29 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 30 H 0.14 4.43 8.06 -2.91 -0.02 4.41 16 31 H 0.13 4.20 6.38 -2.91 -0.02 4.18 16 32 H 0.41 11.64 6.17 -92.70 -0.57 11.06 16 33 H 0.05 1.71 7.96 -2.39 -0.02 1.69 16 34 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 35 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.10 1.11 7.87 -2.39 -0.02 1.09 16 37 H 0.13 1.55 5.24 -2.39 -0.01 1.54 16 38 H 0.10 0.98 8.03 -2.39 -0.02 0.96 16 39 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.10 0.95 8.14 -2.39 -0.02 0.94 16 41 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.42 2.18 9.10 -74.06 -0.67 1.50 16 43 H 0.10 6.30 5.76 -2.91 -0.02 6.28 16 Total: -1.00 -76.85 363.29 3.16 -73.68 By element: Atomic # 1 Polarization: 35.20 SS G_CDS: -0.19 Total: 35.02 kcal Atomic # 6 Polarization: -28.58 SS G_CDS: 3.55 Total: -25.03 kcal Atomic # 7 Polarization: -70.43 SS G_CDS: -1.98 Total: -72.41 kcal Atomic # 8 Polarization: -53.41 SS G_CDS: -0.25 Total: -53.66 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.40 kcal Total: -76.85 3.16 -73.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583208644.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.132 kcal (2) G-P(sol) polarization free energy of solvation -76.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds