Wall clock time and date at job start Tue Mar 31 2020 11:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86804 * 119.99861 * 2 1 4 4 H 1.48500 * 109.46824 * 269.99615 * 3 2 1 5 5 H 1.48497 * 109.47126 * 29.99399 * 3 2 1 6 6 H 1.48496 * 109.47059 * 150.00042 * 3 2 1 7 7 C 1.39940 * 120.00239 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00033 * 162.60978 * 7 2 1 9 9 C 1.41438 * 119.99627 * 342.60527 * 7 2 1 10 10 C 1.40788 * 120.17264 * 154.91338 * 9 7 2 11 11 C 1.37715 * 120.04099 * 180.02562 * 10 9 7 12 12 C 1.38380 * 120.40867 * 359.78413 * 11 10 9 13 13 C 1.39882 * 120.35289 * 0.47161 * 12 11 10 14 14 C 1.47889 * 120.01998 * 179.78853 * 13 12 11 15 15 O 1.21546 * 120.00340 * 179.72492 * 14 13 12 16 16 N 1.34774 * 119.99933 * 359.71671 * 14 13 12 17 17 C 1.46500 * 120.00114 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.47390 * 180.02562 * 17 16 14 19 19 H 1.08994 * 109.47013 * 55.00140 * 18 17 16 20 20 C 1.52999 * 109.47164 * 175.00477 * 18 17 16 21 21 C 1.53001 * 109.47264 * 185.00354 * 20 18 17 22 22 C 1.53005 * 117.49671 * 243.62357 * 21 20 18 23 23 C 1.52992 * 117.50087 * 175.00115 * 21 20 18 24 24 C 1.50700 * 109.47349 * 295.00127 * 18 17 16 25 25 O 1.20833 * 119.99767 * 0.02562 * 24 18 17 26 26 O 1.34222 * 120.00373 * 179.97438 * 24 18 17 27 27 C 1.39027 * 119.95446 * 359.50960 * 13 12 11 28 28 H 0.96997 * 120.00326 * 0.02562 * 1 2 3 29 29 H 1.07997 * 119.98345 * 0.02562 * 10 9 7 30 30 H 1.07993 * 119.79893 * 180.02562 * 11 10 9 31 31 H 1.07994 * 119.81848 * 180.23157 * 12 11 10 32 32 H 0.97002 * 120.00761 * 0.02562 * 16 14 13 33 33 H 1.09001 * 109.47224 * 60.00777 * 17 16 14 34 34 H 1.08996 * 109.47373 * 300.00587 * 17 16 14 35 35 H 1.09000 * 109.47074 * 304.99595 * 20 18 17 36 36 H 1.09000 * 109.47822 * 65.00172 * 20 18 17 37 37 H 1.09005 * 115.55153 * 29.31929 * 21 20 18 38 38 H 1.08995 * 117.49924 * 359.97438 * 22 21 20 39 39 H 1.08999 * 117.50087 * 145.02098 * 22 21 20 40 40 H 1.09008 * 117.49766 * 214.97535 * 23 21 20 41 41 H 1.08994 * 117.50479 * 359.96754 * 23 21 20 42 42 H 0.96702 * 117.00216 * 179.97438 * 26 24 18 43 43 H 1.08003 * 120.20552 * 180.23106 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4396 2.6527 0.6999 6 1 3.5397 1.4402 0.7000 7 6 2.0080 -1.2119 0.0005 8 1 3.0510 -1.2334 -0.2790 9 6 1.3493 -2.4086 0.3673 10 6 1.8189 -3.6485 -0.1062 11 6 1.1752 -4.8120 0.2522 12 6 0.0679 -4.7730 1.0813 13 6 -0.4162 -3.5500 1.5570 14 6 -1.6029 -3.5165 2.4389 15 8 -2.0204 -2.4540 2.8562 16 7 -2.2217 -4.6643 2.7798 17 6 -3.3970 -4.6313 3.6538 18 6 -3.9024 -6.0571 3.8830 19 1 -3.0903 -6.6726 4.2698 20 6 -5.0512 -6.0347 4.8932 21 6 -5.4738 -7.4691 5.2168 22 6 -6.8926 -7.8919 4.8303 23 6 -6.5356 -7.6653 6.3007 24 6 -4.3915 -6.6324 2.5788 25 8 -4.3406 -5.9701 1.5695 26 8 -4.8828 -7.8808 2.5383 27 6 0.2225 -2.3663 1.2050 28 1 -0.4850 0.8400 -0.0004 29 1 2.6846 -3.6873 -0.7508 30 1 1.5390 -5.7610 -0.1129 31 1 -0.4274 -5.6916 1.3593 32 1 -1.8886 -5.5124 2.4470 33 1 -4.1821 -4.0382 3.1847 34 1 -3.1261 -4.1840 4.6102 35 1 -4.7226 -5.5381 5.8062 36 1 -5.8973 -5.4935 4.4696 37 1 -4.6867 -8.2195 5.1415 38 1 -7.5250 -7.1479 4.3459 39 1 -7.0392 -8.9204 4.5007 40 1 -6.4472 -8.5450 6.9385 41 1 -6.9328 -6.7726 6.7837 42 1 -5.1847 -8.2062 1.6791 43 1 -0.1457 -1.4200 1.5731 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583208645.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:36 Heat of formation + Delta-G solvation = -95.771029 kcal Electronic energy + Delta-G solvation = -25784.960790 eV Core-core repulsion = 21988.055032 eV Total energy + Delta-G solvation = -3796.905758 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.70718 -39.04204 -37.89142 -37.02850 -36.29757 -34.97164 -33.71759 -32.44366 -30.09350 -29.39759 -26.79505 -25.28545 -24.70834 -22.61845 -22.36609 -21.06407 -20.74985 -20.59606 -19.39072 -18.23177 -17.69284 -17.07205 -16.33518 -16.09801 -15.35259 -15.30297 -15.05669 -14.69526 -14.43193 -14.40199 -13.81271 -13.65018 -13.18039 -12.90230 -12.66382 -12.51266 -12.43224 -12.39428 -11.89604 -11.79310 -11.61019 -11.56589 -11.37444 -11.11757 -11.03267 -10.72542 -10.62895 -10.50249 -10.46243 -10.13289 -10.00268 -9.65851 -9.18153 -8.98556 -8.62137 -7.58768 -7.48052 -6.76128 -4.37956 2.10574 2.25804 2.84412 2.85784 3.09842 3.12973 3.18819 3.47571 3.65361 3.91721 3.95647 4.23252 4.42021 4.57131 4.68096 4.68604 4.82235 4.96302 5.19737 5.24721 5.36794 5.45389 5.50889 5.61914 5.63601 5.64804 5.80591 5.85023 5.95348 6.00698 6.11886 6.30731 6.39664 6.74562 6.85594 7.02149 7.05454 7.24635 7.41789 7.73448 7.78789 7.80070 7.95654 8.11763 8.22319 8.54002 8.83658 8.87056 8.99625 10.18659 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024775 B = 0.002678 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.883320 B =10452.801725 C =11085.534715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.460 4.460 8 H 0.081 0.919 9 C 0.098 3.902 10 C -0.211 4.211 11 C -0.099 4.099 12 C -0.216 4.216 13 C -0.126 4.126 14 C 0.567 3.433 15 O -0.547 6.547 16 N -0.731 5.731 17 C 0.135 3.865 18 C -0.088 4.088 19 H 0.116 0.884 20 C -0.079 4.079 21 C -0.144 4.144 22 C -0.170 4.170 23 C -0.185 4.185 24 C 0.475 3.525 25 O -0.495 6.495 26 O -0.510 6.510 27 C -0.092 4.092 28 H 0.284 0.716 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.397 0.603 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.405 0.595 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.932 -14.690 9.650 20.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.489 4.489 8 H 0.099 0.901 9 C 0.096 3.904 10 C -0.231 4.231 11 C -0.117 4.117 12 C -0.236 4.236 13 C -0.129 4.129 14 C 0.358 3.642 15 O -0.425 6.425 16 N -0.384 5.384 17 C 0.011 3.989 18 C -0.108 4.108 19 H 0.134 0.866 20 C -0.117 4.117 21 C -0.162 4.162 22 C -0.207 4.207 23 C -0.222 4.222 24 C 0.316 3.684 25 O -0.381 6.381 26 O -0.322 6.322 27 C -0.112 4.112 28 H 0.096 0.904 29 H 0.114 0.886 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.232 0.768 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.128 0.872 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.264 0.736 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.313 -13.405 10.041 20.212 hybrid contribution 0.180 -0.056 -0.928 0.947 sum -11.133 -13.461 9.113 19.702 Atomic orbital electron populations 1.69792 1.07563 1.29751 1.33655 1.25968 0.94766 1.01526 0.92368 0.86291 0.80597 0.80567 0.79187 1.19472 1.19968 1.18399 1.19564 0.98015 0.91003 1.40357 0.90114 1.17602 0.91217 0.92467 0.89124 1.21094 1.03478 0.92813 1.05718 1.20429 0.96136 0.96726 0.98401 1.20320 1.01270 0.94607 1.07369 1.19456 0.96431 0.95297 1.01720 1.18780 0.83220 0.82642 0.79554 1.90688 1.66607 1.30007 1.55226 1.45789 1.30548 1.09937 1.52153 1.21119 0.89261 0.92959 0.95557 1.21406 1.00269 0.97722 0.91367 0.86643 1.21120 0.96584 0.95792 0.98191 1.22218 0.93171 0.97252 1.03552 1.22930 0.98003 1.02399 0.97407 1.23001 1.03935 1.03291 0.92008 1.23354 0.74349 0.79383 0.91327 1.90847 1.50911 1.60142 1.36245 1.84578 1.74562 1.31741 1.41293 1.21626 0.96423 0.96401 0.96788 0.90449 0.88623 0.88959 0.89492 0.76817 0.90826 0.90180 0.89324 0.90837 0.87217 0.89227 0.88908 0.88902 0.88877 0.73636 0.84847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -21.23 10.97 55.55 0.61 -20.62 16 2 C 0.07 1.88 5.14 -17.34 -0.09 1.79 16 3 Si 0.91 19.06 29.59 -169.99 -5.03 14.03 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.46 -12.30 9.05 -37.73 -0.34 -12.64 16 8 H 0.08 2.04 7.90 -52.49 -0.41 1.62 16 9 C 0.10 2.66 5.57 -106.87 -0.59 2.07 16 10 C -0.21 -5.13 9.78 -38.81 -0.38 -5.51 16 11 C -0.10 -2.17 10.01 -39.72 -0.40 -2.57 16 12 C -0.22 -4.72 9.55 -38.91 -0.37 -5.09 16 13 C -0.13 -3.08 5.87 -105.04 -0.62 -3.70 16 14 C 0.57 12.90 7.77 -12.31 -0.10 12.80 16 15 O -0.55 -14.08 16.33 5.32 0.09 -13.99 16 16 N -0.73 -12.62 4.76 -61.24 -0.29 -12.91 16 17 C 0.14 1.86 4.63 -4.04 -0.02 1.84 16 18 C -0.09 -0.85 2.33 -91.77 -0.21 -1.06 16 19 H 0.12 0.92 8.14 -51.93 -0.42 0.49 16 20 C -0.08 -0.60 4.95 -26.73 -0.13 -0.73 16 21 C -0.14 -1.00 4.12 -90.62 -0.37 -1.38 16 22 C -0.17 -1.16 9.68 -26.73 -0.26 -1.42 16 23 C -0.19 -1.18 10.25 -26.74 -0.27 -1.46 16 24 C 0.48 5.25 7.28 36.01 0.26 5.51 16 25 O -0.50 -7.74 16.05 -18.76 -0.30 -8.04 16 26 O -0.51 -3.97 11.30 -39.24 -0.44 -4.41 16 27 C -0.09 -2.53 8.23 -38.45 -0.32 -2.84 16 28 H 0.28 7.08 8.30 -40.82 -0.34 6.74 16 29 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 30 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 31 H 0.09 1.60 6.38 -52.49 -0.33 1.27 16 32 H 0.40 6.19 6.17 -40.82 -0.25 5.94 16 33 H 0.07 1.15 7.96 -51.93 -0.41 0.74 16 34 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.59 7.87 -51.93 -0.41 0.18 16 37 H 0.11 0.77 8.02 -51.93 -0.42 0.35 16 38 H 0.09 0.63 8.03 -51.93 -0.42 0.22 16 39 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.53 8.14 -51.92 -0.42 0.11 16 41 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.41 1.87 9.10 45.56 0.41 2.28 16 43 H 0.13 3.94 5.76 -52.48 -0.30 3.63 16 LS Contribution 365.00 15.07 5.50 5.50 Total: -1.00 -33.36 365.00 -9.14 -42.51 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -5.06 Total: 12.33 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -4.21 Total: -14.39 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: 0.32 Total: -33.53 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.66 Total: -26.44 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.36 -9.14 -42.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583208645.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.264 kcal (2) G-P(sol) polarization free energy of solvation -33.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds