Wall clock time and date at job start Tue Mar 31 2020 11:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86804 * 119.99861 * 2 1 4 4 H 1.48500 * 109.46824 * 269.99615 * 3 2 1 5 5 H 1.48497 * 109.47126 * 29.99399 * 3 2 1 6 6 H 1.48496 * 109.47059 * 150.00042 * 3 2 1 7 7 C 1.39940 * 120.00239 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00033 * 162.60978 * 7 2 1 9 9 C 1.41438 * 119.99627 * 342.60527 * 7 2 1 10 10 C 1.40788 * 120.17264 * 154.91338 * 9 7 2 11 11 C 1.37715 * 120.04099 * 180.02562 * 10 9 7 12 12 C 1.38380 * 120.40867 * 359.78413 * 11 10 9 13 13 C 1.39882 * 120.35289 * 0.47161 * 12 11 10 14 14 C 1.47889 * 120.01998 * 179.78853 * 13 12 11 15 15 O 1.21546 * 120.00340 * 179.72492 * 14 13 12 16 16 N 1.34774 * 119.99933 * 359.71671 * 14 13 12 17 17 C 1.46500 * 120.00114 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.47390 * 180.02562 * 17 16 14 19 19 H 1.08994 * 109.47013 * 55.00140 * 18 17 16 20 20 C 1.52999 * 109.47164 * 175.00477 * 18 17 16 21 21 C 1.53001 * 109.47264 * 185.00354 * 20 18 17 22 22 C 1.53005 * 117.49671 * 243.62357 * 21 20 18 23 23 C 1.52992 * 117.50087 * 175.00115 * 21 20 18 24 24 C 1.50700 * 109.47349 * 295.00127 * 18 17 16 25 25 O 1.20833 * 119.99767 * 0.02562 * 24 18 17 26 26 O 1.34222 * 120.00373 * 179.97438 * 24 18 17 27 27 C 1.39027 * 119.95446 * 359.50960 * 13 12 11 28 28 H 0.96997 * 120.00326 * 0.02562 * 1 2 3 29 29 H 1.07997 * 119.98345 * 0.02562 * 10 9 7 30 30 H 1.07993 * 119.79893 * 180.02562 * 11 10 9 31 31 H 1.07994 * 119.81848 * 180.23157 * 12 11 10 32 32 H 0.97002 * 120.00761 * 0.02562 * 16 14 13 33 33 H 1.09001 * 109.47224 * 60.00777 * 17 16 14 34 34 H 1.08996 * 109.47373 * 300.00587 * 17 16 14 35 35 H 1.09000 * 109.47074 * 304.99595 * 20 18 17 36 36 H 1.09000 * 109.47822 * 65.00172 * 20 18 17 37 37 H 1.09005 * 115.55153 * 29.31929 * 21 20 18 38 38 H 1.08995 * 117.49924 * 359.97438 * 22 21 20 39 39 H 1.08999 * 117.50087 * 145.02098 * 22 21 20 40 40 H 1.09008 * 117.49766 * 214.97535 * 23 21 20 41 41 H 1.08994 * 117.50479 * 359.96754 * 23 21 20 42 42 H 0.96702 * 117.00216 * 179.97438 * 26 24 18 43 43 H 1.08003 * 120.20552 * 180.23106 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4396 2.6527 0.6999 6 1 3.5397 1.4402 0.7000 7 6 2.0080 -1.2119 0.0005 8 1 3.0510 -1.2334 -0.2790 9 6 1.3493 -2.4086 0.3673 10 6 1.8189 -3.6485 -0.1062 11 6 1.1752 -4.8120 0.2522 12 6 0.0679 -4.7730 1.0813 13 6 -0.4162 -3.5500 1.5570 14 6 -1.6029 -3.5165 2.4389 15 8 -2.0204 -2.4540 2.8562 16 7 -2.2217 -4.6643 2.7798 17 6 -3.3970 -4.6313 3.6538 18 6 -3.9024 -6.0571 3.8830 19 1 -3.0903 -6.6726 4.2698 20 6 -5.0512 -6.0347 4.8932 21 6 -5.4738 -7.4691 5.2168 22 6 -6.8926 -7.8919 4.8303 23 6 -6.5356 -7.6653 6.3007 24 6 -4.3915 -6.6324 2.5788 25 8 -4.3406 -5.9701 1.5695 26 8 -4.8828 -7.8808 2.5383 27 6 0.2225 -2.3663 1.2050 28 1 -0.4850 0.8400 -0.0004 29 1 2.6846 -3.6873 -0.7508 30 1 1.5390 -5.7610 -0.1129 31 1 -0.4274 -5.6916 1.3593 32 1 -1.8886 -5.5124 2.4470 33 1 -4.1821 -4.0382 3.1847 34 1 -3.1261 -4.1840 4.6102 35 1 -4.7226 -5.5381 5.8062 36 1 -5.8973 -5.4935 4.4696 37 1 -4.6867 -8.2195 5.1415 38 1 -7.5250 -7.1479 4.3459 39 1 -7.0392 -8.9204 4.5007 40 1 -6.4472 -8.5450 6.9385 41 1 -6.9328 -6.7726 6.7837 42 1 -5.1847 -8.2062 1.6791 43 1 -0.1457 -1.4200 1.5731 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583208645.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:35 Heat of formation + Delta-G solvation = -116.998688 kcal Electronic energy + Delta-G solvation = -25785.881291 eV Core-core repulsion = 21988.055032 eV Total energy + Delta-G solvation = -3797.826258 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.66695 -40.69794 -38.86546 -38.46050 -37.22168 -36.18652 -35.59662 -33.68826 -31.87797 -31.28254 -27.92757 -27.07761 -25.71731 -24.00182 -23.10739 -22.81766 -21.75746 -21.50651 -20.88737 -19.49272 -19.06117 -18.07455 -17.82236 -17.35587 -16.84961 -16.51654 -16.40465 -16.11692 -15.82561 -15.50263 -15.06374 -14.98104 -14.67961 -14.38508 -14.27109 -13.84806 -13.57113 -13.40596 -13.28435 -12.97493 -12.78539 -12.69323 -12.54829 -12.41431 -12.27908 -12.20721 -12.04202 -11.92075 -11.53216 -11.51191 -11.08045 -11.06979 -10.78727 -10.67681 -10.16202 -9.47606 -9.39548 -8.66567 -6.38854 0.37364 0.99861 1.24031 1.36002 1.46217 1.52839 2.05946 2.12350 2.18644 2.21971 2.78766 3.01264 3.36102 3.68440 3.69435 3.95112 4.02863 4.11323 4.17445 4.35300 4.39627 4.42953 4.56437 4.58663 4.63877 4.74521 4.89660 4.90666 4.96112 4.99671 5.08018 5.15241 5.17925 5.30129 5.36799 5.41360 5.47296 5.51211 5.67950 5.85090 5.91038 6.04212 6.27135 6.47732 6.65110 6.87079 6.93887 7.05258 7.28546 8.30409 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024775 B = 0.002678 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.883320 B =10452.801725 C =11085.534715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.027 3.973 3 Si 0.985 3.015 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.253 1.253 7 C -0.496 4.496 8 H 0.086 0.914 9 C 0.066 3.934 10 C -0.216 4.216 11 C -0.096 4.096 12 C -0.198 4.198 13 C -0.139 4.139 14 C 0.561 3.439 15 O -0.589 6.589 16 N -0.707 5.707 17 C 0.131 3.869 18 C -0.077 4.077 19 H 0.144 0.856 20 C -0.075 4.075 21 C -0.144 4.144 22 C -0.177 4.177 23 C -0.181 4.181 24 C 0.483 3.517 25 O -0.548 6.548 26 O -0.494 6.494 27 C -0.131 4.131 28 H 0.286 0.714 29 H 0.110 0.890 30 H 0.139 0.861 31 H 0.130 0.870 32 H 0.408 0.592 33 H 0.050 0.950 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.065 0.935 37 H 0.117 0.883 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.422 0.578 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.745 -17.567 10.469 23.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.187 4.187 3 Si 0.805 3.195 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.177 1.177 7 C -0.526 4.526 8 H 0.104 0.896 9 C 0.064 3.936 10 C -0.236 4.236 11 C -0.114 4.114 12 C -0.218 4.218 13 C -0.142 4.142 14 C 0.351 3.649 15 O -0.471 6.471 16 N -0.359 5.359 17 C 0.007 3.993 18 C -0.096 4.096 19 H 0.162 0.838 20 C -0.112 4.112 21 C -0.162 4.162 22 C -0.214 4.214 23 C -0.218 4.218 24 C 0.326 3.674 25 O -0.439 6.439 26 O -0.307 6.307 27 C -0.152 4.152 28 H 0.097 0.903 29 H 0.128 0.872 30 H 0.157 0.843 31 H 0.148 0.852 32 H 0.245 0.755 33 H 0.069 0.931 34 H 0.109 0.891 35 H 0.121 0.879 36 H 0.084 0.916 37 H 0.135 0.865 38 H 0.101 0.899 39 H 0.117 0.883 40 H 0.120 0.880 41 H 0.113 0.887 42 H 0.283 0.717 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.146 -16.381 10.869 22.599 hybrid contribution 0.013 0.567 -1.150 1.282 sum -11.133 -15.815 9.719 21.645 Atomic orbital electron populations 1.69902 1.09358 1.30637 1.35389 1.26909 0.95406 1.05124 0.91301 0.85171 0.79078 0.75590 0.79697 1.18162 1.19742 1.17666 1.19861 0.98450 0.92086 1.42164 0.89621 1.17970 0.91778 0.94029 0.89807 1.21410 1.03932 0.92755 1.05484 1.20919 0.95352 0.97795 0.97306 1.20795 1.00631 0.94987 1.05390 1.19789 0.96923 0.95559 1.01910 1.18688 0.83223 0.83494 0.79497 1.90660 1.67702 1.31835 1.56866 1.45599 1.30503 1.08611 1.51236 1.21319 0.87220 0.95891 0.94833 1.21359 1.01762 0.95112 0.91366 0.83839 1.21113 0.95485 0.96634 0.97997 1.22182 0.93376 0.96632 1.04051 1.22968 0.97897 1.02555 0.97930 1.23066 1.03174 1.03736 0.91860 1.23539 0.73254 0.79672 0.90885 1.90847 1.53394 1.61564 1.38058 1.84536 1.73634 1.29929 1.42565 1.21440 0.98301 0.96329 0.99113 0.90321 0.87157 0.84338 0.85244 0.75540 0.93119 0.89071 0.87927 0.91590 0.86550 0.89873 0.88350 0.88014 0.88737 0.71709 0.88296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.55 10.97 21.83 0.24 -47.31 16 2 C 0.03 1.46 5.14 85.26 0.44 1.90 16 3 Si 0.98 40.39 29.59 68.60 2.03 42.42 16 4 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 5 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 6 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 7 C -0.50 -27.58 9.05 23.47 0.21 -27.37 16 8 H 0.09 4.46 7.90 -2.91 -0.02 4.44 16 9 C 0.07 3.71 5.57 -21.32 -0.12 3.59 16 10 C -0.22 -10.37 9.78 22.77 0.22 -10.14 16 11 C -0.10 -3.94 10.01 22.18 0.22 -3.72 16 12 C -0.20 -8.21 9.55 22.70 0.22 -8.00 16 13 C -0.14 -6.87 5.87 -20.13 -0.12 -6.99 16 14 C 0.56 25.95 7.77 86.80 0.67 26.63 16 15 O -0.59 -31.74 16.33 -3.86 -0.06 -31.80 16 16 N -0.71 -23.67 4.76 -465.94 -2.22 -25.89 16 17 C 0.13 3.46 4.63 86.38 0.40 3.86 16 18 C -0.08 -1.28 2.33 -11.54 -0.03 -1.31 16 19 H 0.14 1.67 8.14 -2.39 -0.02 1.65 16 20 C -0.07 -0.96 4.95 30.59 0.15 -0.80 16 21 C -0.14 -1.58 4.12 -10.79 -0.04 -1.63 16 22 C -0.18 -2.00 9.68 30.60 0.30 -1.70 16 23 C -0.18 -1.84 10.25 30.59 0.31 -1.53 16 24 C 0.48 9.63 7.28 71.24 0.52 10.15 16 25 O -0.55 -16.61 16.05 21.94 0.35 -16.26 16 26 O -0.49 -6.19 11.30 -51.34 -0.58 -6.78 16 27 C -0.13 -7.55 8.23 23.01 0.19 -7.36 16 28 H 0.29 15.17 8.30 -92.71 -0.77 14.40 16 29 H 0.11 4.85 8.06 -2.91 -0.02 4.82 16 30 H 0.14 4.43 8.06 -2.91 -0.02 4.41 16 31 H 0.13 4.20 6.38 -2.91 -0.02 4.18 16 32 H 0.41 11.63 6.17 -92.71 -0.57 11.06 16 33 H 0.05 1.61 7.96 -2.39 -0.02 1.59 16 34 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.07 0.97 7.87 -2.39 -0.02 0.95 16 37 H 0.12 1.17 8.02 -2.38 -0.02 1.15 16 38 H 0.08 1.05 8.03 -2.39 -0.02 1.03 16 39 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 41 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.42 2.67 9.10 -74.06 -0.67 2.00 16 43 H 0.10 6.31 5.76 -2.91 -0.02 6.29 16 Total: -1.00 -77.86 365.00 3.12 -74.75 By element: Atomic # 1 Polarization: 35.47 SS G_CDS: -0.19 Total: 35.28 kcal Atomic # 6 Polarization: -27.96 SS G_CDS: 3.55 Total: -24.41 kcal Atomic # 7 Polarization: -71.22 SS G_CDS: -1.98 Total: -73.20 kcal Atomic # 8 Polarization: -54.54 SS G_CDS: -0.29 Total: -54.84 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 2.03 Total: 42.42 kcal Total: -77.86 3.12 -74.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583208645.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.252 kcal (2) G-P(sol) polarization free energy of solvation -77.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds