Wall clock time and date at job start Tue Mar 31 2020 11:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99884 * 2 1 4 4 C 1.53003 * 109.47060 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.46901 * 64.99869 * 4 3 2 6 6 C 1.46504 * 119.99759 * 84.66014 * 5 4 3 7 7 C 1.50702 * 109.47500 * 84.03105 * 6 5 4 8 8 H 1.07996 * 119.99626 * 0.02562 * 7 6 5 9 9 C 1.37869 * 119.99944 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00413 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99843 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.46960 * 60.00525 * 11 9 7 13 13 H 1.48498 * 109.47301 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.46852 * 300.00365 * 11 9 7 15 15 C 1.34776 * 120.00482 * 264.65066 * 5 4 3 16 16 O 1.21654 * 119.99437 * 5.91268 * 15 5 4 17 17 C 1.47079 * 120.00195 * 185.90184 * 15 5 4 18 18 C 1.36049 * 127.13717 * 41.53893 * 17 15 5 19 19 O 1.33803 * 109.85919 * 179.97438 * 18 17 15 20 20 C 1.34913 * 111.35090 * 359.97438 * 19 18 17 21 21 C 1.40266 * 107.62263 * 359.72535 * 20 19 18 22 22 C 1.39067 * 120.28989 * 180.28874 * 21 20 19 23 23 C 1.37884 * 119.62624 * 0.17626 * 22 21 20 24 24 C 1.38640 * 120.20125 * 0.02562 * 23 22 21 25 25 C 1.37894 * 120.65454 * 359.54649 * 24 23 22 26 26 C 1.50699 * 120.01018 * 179.91710 * 25 24 23 27 27 H 1.09005 * 109.47040 * 300.00246 * 1 2 3 28 28 H 1.09006 * 109.47400 * 59.99435 * 1 2 3 29 29 H 1.08995 * 109.47396 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47417 * 60.00316 * 3 2 1 31 31 H 1.09002 * 109.47500 * 300.00244 * 3 2 1 32 32 H 1.08997 * 109.47011 * 305.00295 * 4 3 2 33 33 H 1.08994 * 109.47171 * 185.00374 * 4 3 2 34 34 H 1.08999 * 109.47131 * 204.03882 * 6 5 4 35 35 H 1.09006 * 109.47002 * 324.03559 * 6 5 4 36 36 H 0.97000 * 120.00294 * 179.97438 * 10 9 7 37 37 H 1.08001 * 125.07226 * 0.02562 * 18 17 15 38 38 H 1.08005 * 120.18693 * 180.19341 * 22 21 20 39 39 H 1.07996 * 119.89703 * 179.97438 * 23 22 21 40 40 H 1.08000 * 119.67025 * 179.97438 * 24 23 22 41 41 H 1.08994 * 109.47560 * 270.77325 * 26 25 24 42 42 H 1.09000 * 109.47105 * 30.77684 * 26 25 24 43 43 H 1.09002 * 109.46682 * 150.76847 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.1735 1.3880 -2.4481 7 6 5.5493 2.0022 -2.4130 8 1 6.2102 1.7990 -1.5834 9 6 5.9644 2.8225 -3.4403 10 7 5.1597 3.0695 -4.4508 11 14 7.6700 3.5832 -3.3971 12 1 8.6916 2.5061 -3.3629 13 1 7.8705 4.4181 -4.6087 14 1 7.8033 4.4307 -2.1849 15 6 4.1986 -0.7637 -1.3050 16 8 3.9323 -1.4633 -0.3460 17 6 4.7637 -1.3673 -2.5213 18 6 5.7679 -0.8716 -3.2939 19 8 6.0069 -1.7013 -4.3161 20 6 5.1899 -2.7743 -4.2791 21 6 4.3643 -2.6408 -3.1530 22 6 3.4171 -3.6154 -2.8582 23 6 3.2955 -4.7177 -3.6776 24 6 4.1131 -4.8542 -4.7889 25 6 5.0496 -3.8896 -5.0955 26 6 5.9321 -4.0536 -6.3059 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8465 -0.8900 32 1 3.8514 0.5682 0.8409 33 1 3.9785 2.1765 0.0890 34 1 4.0758 0.7661 -3.3380 35 1 3.4233 2.1784 -2.4731 36 1 5.4517 3.6469 -5.1734 37 1 6.2943 0.0532 -3.1092 38 1 2.7801 -3.5094 -1.9924 39 1 2.5617 -5.4774 -3.4525 40 1 4.0108 -5.7212 -5.4246 41 1 6.8342 -4.5981 -6.0269 42 1 5.3951 -4.6097 -7.0744 43 1 6.2052 -3.0716 -6.6922 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591761381.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:40 Heat of formation + Delta-G solvation = -54.166440 kcal Electronic energy + Delta-G solvation = -27174.755122 eV Core-core repulsion = 23379.653474 eV Total energy + Delta-G solvation = -3795.101648 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.06283 -38.87607 -37.74275 -37.24575 -34.93864 -33.25804 -32.75673 -31.25349 -29.92027 -28.69232 -27.20501 -26.65962 -26.00974 -23.51116 -23.15257 -22.26083 -21.89880 -20.75780 -18.22581 -17.26813 -16.70097 -16.45962 -16.14269 -15.88581 -15.69158 -15.34004 -15.00791 -14.98936 -14.49845 -14.33077 -13.88570 -13.58853 -13.28096 -13.18763 -12.77235 -12.51870 -12.22973 -12.20579 -12.05309 -11.70331 -11.60530 -11.54771 -11.37367 -11.30962 -11.07072 -10.83933 -10.70930 -10.59116 -10.29509 -9.88758 -9.47120 -9.31967 -9.06130 -8.69892 -8.24780 -7.73167 -7.60764 -6.32743 -4.44289 1.24712 1.65726 2.47228 3.13931 3.21775 3.23076 3.24026 3.70822 3.90801 4.09351 4.17966 4.29528 4.88502 4.94476 5.05396 5.10294 5.31551 5.40895 5.41694 5.49298 5.63744 5.65762 5.67611 5.68823 5.70745 5.77660 5.84007 5.88543 5.94790 5.99831 6.15287 6.24967 6.39779 6.60974 6.65690 6.72936 6.77856 6.84216 6.98550 7.15273 7.46945 7.56356 7.58074 7.65131 7.91921 8.35853 8.67554 9.09966 9.25860 10.71716 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.008583 B = 0.006461 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3261.655413 B = 4332.326472 C = 6995.098213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.370 6.370 3 C 0.045 3.955 4 C 0.125 3.875 5 N -0.590 5.590 6 C 0.232 3.768 7 C -0.555 4.555 8 H 0.066 0.934 9 C 0.070 3.930 10 N -0.877 5.877 11 Si 0.893 3.107 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.274 1.274 15 C 0.593 3.407 16 O -0.551 6.551 17 C -0.237 4.237 18 C 0.090 3.910 19 O -0.188 6.188 20 C 0.038 3.962 21 C -0.081 4.081 22 C -0.071 4.071 23 C -0.135 4.135 24 C -0.110 4.110 25 C -0.073 4.073 26 C -0.110 4.110 27 H 0.034 0.966 28 H 0.035 0.965 29 H 0.079 0.921 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.042 0.958 35 H 0.034 0.966 36 H 0.269 0.731 37 H 0.243 0.757 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.129 0.871 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.701 -8.341 0.320 9.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.288 6.288 3 C -0.033 4.033 4 C 0.001 3.999 5 N -0.321 5.321 6 C 0.112 3.888 7 C -0.593 4.593 8 H 0.084 0.916 9 C -0.135 4.135 10 N -0.514 5.514 11 Si 0.720 3.280 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.199 1.199 15 C 0.382 3.618 16 O -0.431 6.431 17 C -0.241 4.241 18 C 0.023 3.977 19 O -0.087 6.087 20 C -0.009 4.009 21 C -0.083 4.083 22 C -0.090 4.090 23 C -0.154 4.154 24 C -0.129 4.129 25 C -0.074 4.074 26 C -0.167 4.167 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.098 0.902 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.112 0.888 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.079 0.921 37 H 0.258 0.742 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.146 0.854 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.562 -8.715 0.411 9.424 hybrid contribution 0.441 1.093 -0.003 1.179 sum -3.121 -7.622 0.408 8.246 Atomic orbital electron populations 1.22666 0.82534 1.02084 0.99202 1.88112 1.18222 1.27341 1.95168 1.23041 0.95445 0.85023 0.99783 1.21306 0.91142 0.99391 0.88037 1.47919 1.64959 1.06758 1.12475 1.19513 0.96758 0.90454 0.82097 1.21543 1.00224 1.30306 1.07215 0.91563 1.25012 0.97827 0.95622 0.95085 1.69918 1.36104 1.35934 1.09395 0.86621 0.83874 0.79706 0.77806 1.19712 1.20958 1.19889 1.17010 0.77404 0.81902 0.85528 1.90701 1.53234 1.61571 1.37598 1.20857 1.04464 0.97144 1.01683 1.26059 0.96294 0.92874 0.82490 1.83914 1.51841 1.28132 1.44838 1.19440 0.93833 0.90025 0.97559 1.19518 0.98379 0.95045 0.95336 1.20544 0.96789 0.92321 0.99302 1.20932 1.00542 0.98223 0.95665 1.20675 0.95953 0.98092 0.98132 1.18712 0.99818 0.91754 0.97078 1.20709 0.98444 1.02886 0.94640 0.94775 0.94618 0.90235 0.93288 0.93123 0.89976 0.88820 0.93988 0.94835 0.92093 0.74214 0.85370 0.85711 0.85352 0.91275 0.91423 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.56 16 2 O -0.37 -6.84 9.88 -36.00 -0.36 -7.19 16 3 C 0.04 0.75 6.28 37.16 0.23 0.98 16 4 C 0.12 2.31 5.84 -4.04 -0.02 2.29 16 5 N -0.59 -12.69 2.42 -176.45 -0.43 -13.11 16 6 C 0.23 5.38 4.70 -5.19 -0.02 5.35 16 7 C -0.55 -13.23 6.72 -34.44 -0.23 -13.46 16 8 H 0.07 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 10 N -0.88 -22.84 13.29 55.43 0.74 -22.10 16 11 Si 0.89 19.08 29.54 -169.99 -5.02 14.06 16 12 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 13 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 14 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 15 C 0.59 13.47 7.36 -12.68 -0.09 13.38 16 16 O -0.55 -13.45 16.11 4.46 0.07 -13.37 16 17 C -0.24 -5.15 5.21 -103.25 -0.54 -5.69 16 18 C 0.09 1.87 9.93 29.95 0.30 2.17 16 19 O -0.19 -3.73 10.53 5.33 0.06 -3.68 16 20 C 0.04 0.72 7.05 -38.57 -0.27 0.45 16 21 C -0.08 -1.63 6.39 -104.98 -0.67 -2.31 16 22 C -0.07 -1.27 10.09 -39.40 -0.40 -1.66 16 23 C -0.14 -1.93 10.04 -39.56 -0.40 -2.33 16 24 C -0.11 -1.48 9.67 -39.56 -0.38 -1.87 16 25 C -0.07 -1.12 5.89 -104.49 -0.62 -1.74 16 26 C -0.11 -1.33 10.01 36.01 0.36 -0.97 16 27 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.86 8.04 -51.93 -0.42 0.44 16 32 H 0.08 1.55 7.35 -51.93 -0.38 1.17 16 33 H 0.09 1.60 8.11 -51.93 -0.42 1.18 16 34 H 0.04 1.05 5.98 -51.93 -0.31 0.74 16 35 H 0.03 0.82 8.01 -51.93 -0.42 0.40 16 36 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 37 H 0.24 5.13 5.21 -52.49 -0.27 4.85 16 38 H 0.13 2.30 8.06 -52.48 -0.42 1.87 16 39 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 40 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 43 H 0.07 0.89 8.09 -51.93 -0.42 0.47 16 LS Contribution 364.61 15.07 5.49 5.49 Total: -1.00 -29.52 364.61 -7.17 -36.69 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -5.99 Total: 5.44 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -1.74 Total: -2.23 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: 0.31 Total: -35.22 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.23 Total: -24.24 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.02 Total: 14.06 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.52 -7.17 -36.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591761381.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.475 kcal (2) G-P(sol) polarization free energy of solvation -29.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds