Wall clock time and date at job start Tue Mar 31 2020 11:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99884 * 2 1 4 4 C 1.53003 * 109.47060 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.46901 * 64.99869 * 4 3 2 6 6 C 1.46504 * 119.99759 * 84.66014 * 5 4 3 7 7 C 1.50702 * 109.47500 * 84.03105 * 6 5 4 8 8 H 1.07996 * 119.99626 * 0.02562 * 7 6 5 9 9 C 1.37869 * 119.99944 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00413 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99843 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.46960 * 60.00525 * 11 9 7 13 13 H 1.48498 * 109.47301 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.46852 * 300.00365 * 11 9 7 15 15 C 1.34776 * 120.00482 * 264.65066 * 5 4 3 16 16 O 1.21654 * 119.99437 * 5.91268 * 15 5 4 17 17 C 1.47079 * 120.00195 * 185.90184 * 15 5 4 18 18 C 1.36049 * 127.13717 * 41.53893 * 17 15 5 19 19 O 1.33803 * 109.85919 * 179.97438 * 18 17 15 20 20 C 1.34913 * 111.35090 * 359.97438 * 19 18 17 21 21 C 1.40266 * 107.62263 * 359.72535 * 20 19 18 22 22 C 1.39067 * 120.28989 * 180.28874 * 21 20 19 23 23 C 1.37884 * 119.62624 * 0.17626 * 22 21 20 24 24 C 1.38640 * 120.20125 * 0.02562 * 23 22 21 25 25 C 1.37894 * 120.65454 * 359.54649 * 24 23 22 26 26 C 1.50699 * 120.01018 * 179.91710 * 25 24 23 27 27 H 1.09005 * 109.47040 * 300.00246 * 1 2 3 28 28 H 1.09006 * 109.47400 * 59.99435 * 1 2 3 29 29 H 1.08995 * 109.47396 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47417 * 60.00316 * 3 2 1 31 31 H 1.09002 * 109.47500 * 300.00244 * 3 2 1 32 32 H 1.08997 * 109.47011 * 305.00295 * 4 3 2 33 33 H 1.08994 * 109.47171 * 185.00374 * 4 3 2 34 34 H 1.08999 * 109.47131 * 204.03882 * 6 5 4 35 35 H 1.09006 * 109.47002 * 324.03559 * 6 5 4 36 36 H 0.97000 * 120.00294 * 179.97438 * 10 9 7 37 37 H 1.08001 * 125.07226 * 0.02562 * 18 17 15 38 38 H 1.08005 * 120.18693 * 180.19341 * 22 21 20 39 39 H 1.07996 * 119.89703 * 179.97438 * 23 22 21 40 40 H 1.08000 * 119.67025 * 179.97438 * 24 23 22 41 41 H 1.08994 * 109.47560 * 270.77325 * 26 25 24 42 42 H 1.09000 * 109.47105 * 30.77684 * 26 25 24 43 43 H 1.09002 * 109.46682 * 150.76847 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.1735 1.3880 -2.4481 7 6 5.5493 2.0022 -2.4130 8 1 6.2102 1.7990 -1.5834 9 6 5.9644 2.8225 -3.4403 10 7 5.1597 3.0695 -4.4508 11 14 7.6700 3.5832 -3.3971 12 1 8.6916 2.5061 -3.3629 13 1 7.8705 4.4181 -4.6087 14 1 7.8033 4.4307 -2.1849 15 6 4.1986 -0.7637 -1.3050 16 8 3.9323 -1.4633 -0.3460 17 6 4.7637 -1.3673 -2.5213 18 6 5.7679 -0.8716 -3.2939 19 8 6.0069 -1.7013 -4.3161 20 6 5.1899 -2.7743 -4.2791 21 6 4.3643 -2.6408 -3.1530 22 6 3.4171 -3.6154 -2.8582 23 6 3.2955 -4.7177 -3.6776 24 6 4.1131 -4.8542 -4.7889 25 6 5.0496 -3.8896 -5.0955 26 6 5.9321 -4.0536 -6.3059 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8465 -0.8900 32 1 3.8514 0.5682 0.8409 33 1 3.9785 2.1765 0.0890 34 1 4.0758 0.7661 -3.3380 35 1 3.4233 2.1784 -2.4731 36 1 5.4517 3.6469 -5.1734 37 1 6.2943 0.0532 -3.1092 38 1 2.7801 -3.5094 -1.9924 39 1 2.5617 -5.4774 -3.4525 40 1 4.0108 -5.7212 -5.4246 41 1 6.8342 -4.5981 -6.0269 42 1 5.3951 -4.6097 -7.0744 43 1 6.2052 -3.0716 -6.6922 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591761381.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:39 Heat of formation + Delta-G solvation = -70.735737 kcal Electronic energy + Delta-G solvation = -27175.473621 eV Core-core repulsion = 23379.653474 eV Total energy + Delta-G solvation = -3795.820146 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.53082 -40.57312 -39.01326 -38.63797 -36.72624 -34.70909 -34.49163 -32.62171 -31.35313 -30.13977 -29.04059 -27.77206 -27.23256 -25.13138 -24.93407 -23.62105 -23.23711 -22.22681 -19.80227 -18.86679 -18.48318 -18.00396 -17.50560 -17.42640 -17.15094 -16.74050 -16.54776 -16.43092 -16.02024 -15.83898 -15.19490 -15.14468 -14.58159 -14.33792 -14.28964 -14.24117 -13.72110 -13.45114 -13.32126 -13.17005 -13.06408 -12.99447 -12.82193 -12.65818 -12.57924 -12.52247 -12.12721 -11.98034 -11.90857 -11.74053 -11.00756 -10.83170 -10.59629 -10.55535 -9.57131 -9.48311 -9.03352 -8.23516 -6.41304 -0.11359 0.36103 0.90860 1.44566 1.46740 1.53606 1.76835 2.04780 2.28942 2.45888 2.75016 2.95239 3.05942 3.54638 3.61564 3.91284 4.00661 4.13289 4.15698 4.27360 4.34577 4.40901 4.43086 4.50498 4.52048 4.57333 4.64917 4.69099 4.78647 4.81343 4.86376 4.86922 4.94457 5.11831 5.19312 5.34084 5.36264 5.44786 5.50507 5.64116 5.71362 5.82077 5.99956 6.14548 6.31266 6.53530 6.77557 7.26344 7.39388 8.80950 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.008583 B = 0.006461 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3261.655413 B = 4332.326472 C = 6995.098213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.407 6.407 3 C 0.050 3.950 4 C 0.118 3.882 5 N -0.590 5.590 6 C 0.251 3.749 7 C -0.553 4.553 8 H 0.066 0.934 9 C 0.032 3.968 10 N -0.910 5.910 11 Si 0.952 3.048 12 H -0.266 1.266 13 H -0.284 1.284 14 H -0.269 1.269 15 C 0.589 3.411 16 O -0.575 6.575 17 C -0.260 4.260 18 C 0.085 3.915 19 O -0.193 6.193 20 C 0.014 3.986 21 C -0.113 4.113 22 C -0.099 4.099 23 C -0.116 4.116 24 C -0.095 4.095 25 C -0.076 4.076 26 C -0.108 4.108 27 H 0.059 0.941 28 H 0.039 0.961 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.106 0.894 34 H 0.020 0.980 35 H 0.019 0.981 36 H 0.270 0.730 37 H 0.233 0.767 38 H 0.115 0.885 39 H 0.164 0.836 40 H 0.179 0.821 41 H 0.084 0.916 42 H 0.100 0.900 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.856 -10.069 -0.492 10.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.326 6.326 3 C -0.027 4.027 4 C -0.005 4.005 5 N -0.320 5.320 6 C 0.130 3.870 7 C -0.591 4.591 8 H 0.084 0.916 9 C -0.171 4.171 10 N -0.548 5.548 11 Si 0.777 3.223 12 H -0.191 1.191 13 H -0.210 1.210 14 H -0.194 1.194 15 C 0.378 3.622 16 O -0.457 6.457 17 C -0.265 4.265 18 C 0.017 3.983 19 O -0.093 6.093 20 C -0.032 4.032 21 C -0.115 4.115 22 C -0.117 4.117 23 C -0.134 4.134 24 C -0.113 4.113 25 C -0.077 4.077 26 C -0.165 4.165 27 H 0.077 0.923 28 H 0.057 0.943 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.124 0.876 34 H 0.038 0.962 35 H 0.037 0.963 36 H 0.079 0.921 37 H 0.249 0.751 38 H 0.133 0.867 39 H 0.182 0.818 40 H 0.196 0.804 41 H 0.102 0.898 42 H 0.119 0.881 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.727 -10.436 -0.386 11.088 hybrid contribution 0.393 1.486 0.223 1.553 sum -3.334 -8.950 -0.163 9.552 Atomic orbital electron populations 1.22858 0.80305 1.03154 1.00554 1.88060 1.20817 1.28282 1.95455 1.22992 0.93830 0.84856 1.01054 1.21543 0.92974 0.99551 0.86415 1.47945 1.64655 1.06415 1.12937 1.19152 0.96278 0.89522 0.82074 1.21617 1.00281 1.30034 1.07146 0.91614 1.25662 1.00928 0.95903 0.94579 1.70021 1.37849 1.36810 1.10109 0.85687 0.79973 0.78931 0.77716 1.19076 1.20983 1.19367 1.17226 0.77175 0.82100 0.85661 1.90659 1.54570 1.61998 1.38480 1.21012 1.05135 0.98569 1.01739 1.25714 0.96444 0.93027 0.83093 1.83853 1.52413 1.28666 1.44386 1.19983 0.93980 0.90808 0.98439 1.19768 1.00156 0.95254 0.96301 1.20660 0.97034 0.93665 1.00329 1.21411 1.00419 0.97124 0.94460 1.21281 0.93743 0.98520 0.97721 1.19326 1.00414 0.90549 0.97382 1.20792 0.98867 1.02889 0.93926 0.92293 0.94269 0.89427 0.89736 0.93888 0.90536 0.87577 0.96232 0.96250 0.92072 0.75137 0.86719 0.81801 0.80375 0.89768 0.88129 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 11.01 113.37 1.25 1.99 16 2 O -0.41 -15.16 9.88 -148.24 -1.47 -16.63 16 3 C 0.05 1.67 6.28 71.98 0.45 2.12 16 4 C 0.12 4.46 5.84 86.38 0.50 4.97 16 5 N -0.59 -26.47 2.42 -830.41 -2.01 -28.48 16 6 C 0.25 12.16 4.70 85.63 0.40 12.56 16 7 C -0.55 -27.09 6.72 25.60 0.17 -26.92 16 8 H 0.07 3.19 7.81 -2.91 -0.02 3.17 16 9 C 0.03 1.58 5.46 84.65 0.46 2.04 16 10 N -0.91 -48.46 13.29 21.44 0.28 -48.18 16 11 Si 0.95 39.34 29.54 68.60 2.03 41.36 16 12 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 13 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 14 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 15 C 0.59 28.18 7.36 86.56 0.64 28.82 16 16 O -0.58 -29.37 16.11 -3.46 -0.06 -29.43 16 17 C -0.26 -11.97 5.21 -18.98 -0.10 -12.06 16 18 C 0.08 3.74 9.93 67.31 0.67 4.41 16 19 O -0.19 -8.01 10.53 -3.85 -0.04 -8.05 16 20 C 0.01 0.53 7.05 22.93 0.16 0.69 16 21 C -0.11 -4.72 6.39 -20.10 -0.13 -4.85 16 22 C -0.10 -3.51 10.09 22.38 0.23 -3.29 16 23 C -0.12 -2.97 10.04 22.28 0.22 -2.75 16 24 C -0.10 -2.16 9.67 22.28 0.22 -1.94 16 25 C -0.08 -2.17 5.89 -19.78 -0.12 -2.28 16 26 C -0.11 -2.29 10.01 71.24 0.71 -1.58 16 27 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 28 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 29 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.04 1.48 8.04 -2.39 -0.02 1.46 16 32 H 0.08 2.98 7.35 -2.39 -0.02 2.96 16 33 H 0.11 3.67 8.11 -2.39 -0.02 3.65 16 34 H 0.02 1.04 5.98 -2.39 -0.01 1.03 16 35 H 0.02 0.99 8.01 -2.38 -0.02 0.97 16 36 H 0.27 13.70 8.31 -92.71 -0.77 12.93 16 37 H 0.23 10.49 5.21 -2.91 -0.02 10.47 16 38 H 0.11 4.28 8.06 -2.91 -0.02 4.26 16 39 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 40 H 0.18 2.34 8.06 -2.91 -0.02 2.31 16 41 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.10 1.47 8.09 -2.39 -0.02 1.46 16 43 H 0.05 1.33 8.09 -2.39 -0.02 1.31 16 Total: -1.00 -67.14 364.61 5.50 -61.64 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: 1.02 Total: 25.83 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: 5.74 Total: 1.94 kcal Atomic # 7 Polarization: -74.93 SS G_CDS: -1.72 Total: -76.66 kcal Atomic # 8 Polarization: -52.55 SS G_CDS: -1.56 Total: -54.11 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 2.03 Total: 41.36 kcal Total: -67.14 5.50 -61.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591761381.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.098 kcal (2) G-P(sol) polarization free energy of solvation -67.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds