Wall clock time and date at job start Tue Mar 31 2020 11:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37973 * 119.88260 * 2 1 4 4 C 1.38242 * 120.35092 * 180.02562 * 3 2 1 5 5 C 1.38397 * 119.76708 * 359.87170 * 4 3 2 6 6 C 1.37696 * 119.98171 * 359.95545 * 5 4 3 7 7 C 1.38928 * 120.77683 * 0.36669 * 6 5 4 8 8 O 1.36138 * 111.22328 * 178.94310 * 7 6 5 9 9 C 1.43769 * 109.24280 * 19.03021 * 8 7 6 10 10 H 1.09002 * 110.74991 * 90.57255 * 9 8 7 11 11 C 1.50700 * 110.90537 * 213.85054 * 9 8 7 12 12 O 1.21286 * 119.99872 * 0.97034 * 11 9 8 13 13 N 1.34771 * 120.00120 * 180.97614 * 11 9 8 14 14 C 1.47023 * 125.64687 * 0.02562 * 13 11 9 15 15 C 1.54326 * 107.26714 * 181.02271 * 14 13 11 16 16 C 1.55151 * 102.94357 * 22.19740 * 15 14 13 17 17 O 1.42906 * 111.00735 * 82.56983 * 16 15 14 18 18 C 1.50709 * 111.00459 * 206.41921 * 16 15 14 19 19 H 1.07997 * 119.99762 * 118.54284 * 18 16 15 20 20 C 1.37879 * 119.99968 * 298.54721 * 18 16 15 21 21 N 1.31511 * 120.00005 * 359.97438 * 20 18 16 22 22 Si 1.86800 * 119.99666 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47249 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.46768 * 119.99982 * 22 20 18 25 25 H 1.48497 * 109.46825 * 239.99664 * 22 20 18 26 26 C 1.47422 * 125.64837 * 179.71507 * 13 11 9 27 27 C 1.51642 * 132.18803 * 180.39950 * 6 5 4 28 28 H 1.09002 * 109.47149 * 269.97884 * 1 2 3 29 29 H 1.08996 * 109.46951 * 29.98063 * 1 2 3 30 30 H 1.08998 * 109.46977 * 149.98079 * 1 2 3 31 31 H 1.08000 * 119.82387 * 0.02562 * 3 2 1 32 32 H 1.07996 * 120.11811 * 179.87909 * 4 3 2 33 33 H 1.08006 * 120.00670 * 179.97438 * 5 4 3 34 34 H 1.08996 * 109.88247 * 300.44188 * 14 13 11 35 35 H 1.08999 * 109.88231 * 61.45450 * 14 13 11 36 36 H 1.09003 * 110.71803 * 140.55853 * 15 14 13 37 37 H 1.08997 * 110.72544 * 263.65138 * 15 14 13 38 38 H 0.96693 * 113.99649 * 61.45320 * 17 16 15 39 39 H 0.96996 * 119.99983 * 179.97438 * 21 20 18 40 40 H 1.08996 * 110.36782 * 274.74587 * 26 13 11 41 41 H 1.09004 * 110.36982 * 37.06810 * 26 13 11 42 42 H 1.08997 * 110.93874 * 46.43000 * 27 6 5 43 43 H 1.08998 * 110.96945 * 282.76282 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1963 0.0000 4 6 3.5768 1.2076 -0.0005 5 6 4.2737 0.0119 0.0016 6 6 3.5898 -1.1832 0.0052 7 6 2.2007 -1.2073 -0.0009 8 8 1.7301 -2.4846 -0.0193 9 6 2.7685 -3.3785 0.4162 10 1 2.7252 -3.5240 1.4956 11 6 2.6770 -4.6998 -0.3027 12 8 1.8146 -4.8781 -1.1366 13 7 3.5535 -5.6835 -0.0188 14 6 4.6427 -5.6029 0.9654 15 6 5.3945 -6.9501 0.9279 16 6 5.0385 -7.5079 -0.4755 17 8 5.8855 -6.9460 -1.4800 18 6 5.1093 -9.0132 -0.4924 19 1 4.2252 -9.5929 -0.7129 20 6 6.3028 -9.6502 -0.2262 21 7 7.3795 -8.9443 0.0419 22 14 6.3903 -11.5161 -0.2466 23 1 5.0519 -12.0709 -0.5722 24 1 7.3712 -11.9544 -1.2717 25 1 6.8173 -12.0061 1.0886 26 6 3.5748 -7.0207 -0.6392 27 6 4.0591 -2.6251 0.0160 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3633 -0.8898 -0.5141 31 1 1.6497 2.1288 0.0004 32 1 4.1111 2.1461 -0.0025 33 1 5.3538 0.0162 0.0008 34 1 5.3215 -4.7920 0.7015 35 1 4.2314 -5.4329 1.9604 36 1 6.4695 -6.7945 1.0197 37 1 5.0342 -7.6149 1.7129 38 1 6.8240 -7.1448 -1.3593 39 1 8.2190 -9.3925 0.2295 40 1 2.8892 -7.6906 -0.1203 41 1 3.3138 -6.9532 -1.6954 42 1 4.8431 -2.7740 0.7584 43 1 4.3986 -2.9323 -0.9731 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592853146.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:13 Heat of formation + Delta-G solvation = -86.679299 kcal Electronic energy + Delta-G solvation = -26711.580151 eV Core-core repulsion = 22915.068640 eV Total energy + Delta-G solvation = -3796.511511 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.45038 -39.39929 -37.77530 -36.95755 -34.46609 -33.64767 -32.28827 -31.32116 -30.36704 -29.35878 -28.21977 -26.90835 -25.48429 -24.08618 -22.32800 -22.09456 -20.98447 -19.89923 -19.05331 -17.75393 -17.21904 -16.89676 -16.73207 -15.95969 -15.23652 -15.13753 -15.00140 -14.48073 -14.10871 -14.03553 -13.82632 -13.47183 -13.26002 -13.16878 -12.97213 -12.84865 -12.40865 -12.39125 -12.05840 -11.94457 -11.76815 -11.59797 -11.42514 -11.33098 -11.17056 -10.95817 -10.89345 -10.69189 -10.49646 -10.10364 -9.53417 -9.41268 -8.83228 -8.74966 -8.30174 -8.18158 -8.13288 -6.34788 -4.42646 1.13567 1.23436 2.70146 2.84113 3.15241 3.24851 3.29476 3.48436 3.70556 4.21900 4.27803 4.40002 4.65596 4.76651 4.80042 4.92830 4.95771 5.08612 5.13244 5.33189 5.41485 5.45468 5.52323 5.56502 5.63053 5.65080 5.72739 5.78133 5.91485 6.08014 6.15659 6.22814 6.26498 6.33733 6.36631 6.47003 6.55592 6.78582 6.84682 7.08475 7.21054 7.25911 7.67266 7.91120 7.97169 8.44477 8.60673 9.23859 9.32711 10.72698 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.031815 B = 0.002931 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.874764 B = 9552.144554 C =10099.095254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.104 4.104 3 C -0.089 4.089 4 C -0.147 4.147 5 C -0.073 4.073 6 C -0.167 4.167 7 C 0.108 3.892 8 O -0.273 6.273 9 C 0.070 3.930 10 H 0.109 0.891 11 C 0.528 3.472 12 O -0.531 6.531 13 N -0.601 5.601 14 C 0.091 3.909 15 C -0.135 4.135 16 C 0.248 3.752 17 O -0.582 6.582 18 C -0.535 4.535 19 H 0.066 0.934 20 C 0.073 3.927 21 N -0.895 5.895 22 Si 0.903 3.097 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.122 3.878 27 C -0.097 4.097 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.129 0.871 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.381 0.619 39 H 0.268 0.732 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.102 0.898 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.348 17.133 4.986 18.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.105 4.105 3 C -0.107 4.107 4 C -0.166 4.166 5 C -0.091 4.091 6 C -0.168 4.168 7 C 0.062 3.938 8 O -0.185 6.185 9 C 0.011 3.989 10 H 0.127 0.873 11 C 0.314 3.686 12 O -0.408 6.408 13 N -0.334 5.334 14 C -0.031 4.031 15 C -0.174 4.174 16 C 0.208 3.792 17 O -0.390 6.390 18 C -0.573 4.573 19 H 0.084 0.916 20 C -0.130 4.130 21 N -0.534 5.534 22 Si 0.730 3.270 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 C 0.001 3.999 27 C -0.135 4.135 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.147 0.853 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.231 0.769 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.120 0.880 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.484 17.197 4.279 18.550 hybrid contribution 0.991 -1.262 0.429 1.661 sum -4.493 15.934 4.708 17.212 Atomic orbital electron populations 1.20693 0.90625 1.03012 1.02336 1.19115 0.96414 0.89386 1.05552 1.20759 0.94219 0.96410 0.99336 1.20991 0.94078 0.97674 1.03814 1.20297 0.99900 0.90408 0.98544 1.20764 0.93674 0.95329 1.07031 1.19466 0.91891 0.85532 0.96918 1.86920 1.36800 1.12764 1.82066 1.23127 0.86613 0.89672 0.99522 0.87344 1.19456 0.81812 0.83966 0.83367 1.90716 1.35249 1.81165 1.33624 1.48487 1.30193 1.14196 1.40571 1.22353 0.88761 1.01496 0.90504 1.23183 1.00629 0.92234 1.01357 1.19648 0.84614 0.91250 0.83689 1.86142 1.22284 1.77997 1.52617 1.21467 0.96391 0.90647 1.48804 0.91612 1.24983 0.95374 0.99179 0.93431 1.69714 1.00462 1.35858 1.47364 0.86358 0.78397 0.84494 0.77718 1.19559 1.20758 1.20830 1.22489 0.98810 0.80434 0.98206 1.21747 0.97096 0.89981 1.04633 0.91334 0.91569 0.91079 0.85266 0.85488 0.85637 0.92042 0.92652 0.89350 0.91176 0.76919 0.92250 0.90680 0.90937 0.87961 0.88311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 9.98 36.01 0.36 -0.77 16 2 C -0.10 -1.26 5.90 -104.35 -0.62 -1.88 16 3 C -0.09 -0.88 9.66 -39.68 -0.38 -1.27 16 4 C -0.15 -1.41 10.07 -39.52 -0.40 -1.81 16 5 C -0.07 -0.80 10.03 -39.72 -0.40 -1.20 16 6 C -0.17 -2.20 6.27 -104.10 -0.65 -2.86 16 7 C 0.11 1.56 6.73 -38.95 -0.26 1.30 16 8 O -0.27 -4.60 10.26 -39.14 -0.40 -5.00 16 9 C 0.07 1.08 3.41 -26.98 -0.09 0.99 16 10 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 11 C 0.53 10.15 7.18 -10.99 -0.08 10.07 16 12 O -0.53 -12.26 16.83 -13.41 -0.23 -12.49 16 13 N -0.60 -11.45 3.32 -170.38 -0.57 -12.02 16 14 C 0.09 1.52 6.25 -3.06 -0.02 1.50 16 15 C -0.14 -2.72 5.37 -24.90 -0.13 -2.86 16 16 C 0.25 5.73 0.87 -89.50 -0.08 5.65 16 17 O -0.58 -14.17 13.17 -35.23 -0.46 -14.63 16 18 C -0.53 -13.46 8.27 -34.44 -0.28 -13.74 16 19 H 0.07 1.67 7.79 -52.49 -0.41 1.26 16 20 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 21 N -0.89 -22.14 10.76 55.43 0.60 -21.54 16 22 Si 0.90 19.69 29.54 -169.99 -5.02 14.67 16 23 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 26 C 0.12 2.64 6.09 -2.41 -0.01 2.62 16 27 C -0.10 -1.30 5.59 -26.52 -0.15 -1.45 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 30 H 0.07 0.84 8.00 -51.93 -0.42 0.42 16 31 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.13 1.10 8.06 -52.48 -0.42 0.67 16 34 H 0.06 0.93 6.51 -51.93 -0.34 0.59 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.09 1.86 7.55 -51.93 -0.39 1.46 16 37 H 0.07 1.43 8.04 -51.93 -0.42 1.01 16 38 H 0.38 9.23 7.57 45.56 0.34 9.57 16 39 H 0.27 6.36 8.31 -40.82 -0.34 6.03 16 40 H 0.08 1.57 8.03 -51.93 -0.42 1.16 16 41 H 0.07 1.69 8.03 -51.93 -0.42 1.27 16 42 H 0.10 1.12 7.27 -51.93 -0.38 0.74 16 43 H 0.10 1.47 7.92 -51.93 -0.41 1.06 16 LS Contribution 353.88 15.07 5.33 5.33 Total: -1.00 -29.48 353.88 -9.39 -38.86 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -5.34 Total: 10.78 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -3.30 Total: -3.97 kcal Atomic # 7 Polarization: -33.59 SS G_CDS: 0.03 Total: -33.56 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -1.09 Total: -32.12 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.48 -9.39 -38.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592853146.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.818 kcal (2) G-P(sol) polarization free energy of solvation -29.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds