Wall clock time and date at job start Tue Mar 31 2020 11:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37973 * 119.88260 * 2 1 4 4 C 1.38242 * 120.35092 * 180.02562 * 3 2 1 5 5 C 1.38397 * 119.76708 * 359.87170 * 4 3 2 6 6 C 1.37696 * 119.98171 * 359.95545 * 5 4 3 7 7 C 1.38928 * 120.77683 * 0.36669 * 6 5 4 8 8 O 1.36138 * 111.22328 * 178.94310 * 7 6 5 9 9 C 1.43769 * 109.24280 * 19.03021 * 8 7 6 10 10 H 1.09002 * 110.74991 * 90.57255 * 9 8 7 11 11 C 1.50700 * 110.90537 * 213.85054 * 9 8 7 12 12 O 1.21286 * 119.99872 * 0.97034 * 11 9 8 13 13 N 1.34771 * 120.00120 * 180.97614 * 11 9 8 14 14 C 1.47023 * 125.64687 * 0.02562 * 13 11 9 15 15 C 1.54326 * 107.26714 * 181.02271 * 14 13 11 16 16 C 1.55151 * 102.94357 * 22.19740 * 15 14 13 17 17 O 1.42906 * 111.00735 * 82.56983 * 16 15 14 18 18 C 1.50709 * 111.00459 * 206.41921 * 16 15 14 19 19 H 1.07997 * 119.99762 * 118.54284 * 18 16 15 20 20 C 1.37879 * 119.99968 * 298.54721 * 18 16 15 21 21 N 1.31511 * 120.00005 * 359.97438 * 20 18 16 22 22 Si 1.86800 * 119.99666 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47249 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.46768 * 119.99982 * 22 20 18 25 25 H 1.48497 * 109.46825 * 239.99664 * 22 20 18 26 26 C 1.47422 * 125.64837 * 179.71507 * 13 11 9 27 27 C 1.51642 * 132.18803 * 180.39950 * 6 5 4 28 28 H 1.09002 * 109.47149 * 269.97884 * 1 2 3 29 29 H 1.08996 * 109.46951 * 29.98063 * 1 2 3 30 30 H 1.08998 * 109.46977 * 149.98079 * 1 2 3 31 31 H 1.08000 * 119.82387 * 0.02562 * 3 2 1 32 32 H 1.07996 * 120.11811 * 179.87909 * 4 3 2 33 33 H 1.08006 * 120.00670 * 179.97438 * 5 4 3 34 34 H 1.08996 * 109.88247 * 300.44188 * 14 13 11 35 35 H 1.08999 * 109.88231 * 61.45450 * 14 13 11 36 36 H 1.09003 * 110.71803 * 140.55853 * 15 14 13 37 37 H 1.08997 * 110.72544 * 263.65138 * 15 14 13 38 38 H 0.96693 * 113.99649 * 61.45320 * 17 16 15 39 39 H 0.96996 * 119.99983 * 179.97438 * 21 20 18 40 40 H 1.08996 * 110.36782 * 274.74587 * 26 13 11 41 41 H 1.09004 * 110.36982 * 37.06810 * 26 13 11 42 42 H 1.08997 * 110.93874 * 46.43000 * 27 6 5 43 43 H 1.08998 * 110.96945 * 282.76282 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1963 0.0000 4 6 3.5768 1.2076 -0.0005 5 6 4.2737 0.0119 0.0016 6 6 3.5898 -1.1832 0.0052 7 6 2.2007 -1.2073 -0.0009 8 8 1.7301 -2.4846 -0.0193 9 6 2.7685 -3.3785 0.4162 10 1 2.7252 -3.5240 1.4956 11 6 2.6770 -4.6998 -0.3027 12 8 1.8146 -4.8781 -1.1366 13 7 3.5535 -5.6835 -0.0188 14 6 4.6427 -5.6029 0.9654 15 6 5.3945 -6.9501 0.9279 16 6 5.0385 -7.5079 -0.4755 17 8 5.8855 -6.9460 -1.4800 18 6 5.1093 -9.0132 -0.4924 19 1 4.2252 -9.5929 -0.7129 20 6 6.3028 -9.6502 -0.2262 21 7 7.3795 -8.9443 0.0419 22 14 6.3903 -11.5161 -0.2466 23 1 5.0519 -12.0709 -0.5722 24 1 7.3712 -11.9544 -1.2717 25 1 6.8173 -12.0061 1.0886 26 6 3.5748 -7.0207 -0.6392 27 6 4.0591 -2.6251 0.0160 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3633 -0.8898 -0.5141 31 1 1.6497 2.1288 0.0004 32 1 4.1111 2.1461 -0.0025 33 1 5.3538 0.0162 0.0008 34 1 5.3215 -4.7920 0.7015 35 1 4.2314 -5.4329 1.9604 36 1 6.4695 -6.7945 1.0197 37 1 5.0342 -7.6149 1.7129 38 1 6.8240 -7.1448 -1.3593 39 1 8.2190 -9.3925 0.2295 40 1 2.8892 -7.6906 -0.1203 41 1 3.3138 -6.9532 -1.6954 42 1 4.8431 -2.7740 0.7584 43 1 4.3986 -2.9323 -0.9731 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592853146.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:12 Heat of formation + Delta-G solvation = -104.885230 kcal Electronic energy + Delta-G solvation = -26712.369620 eV Core-core repulsion = 22915.068640 eV Total energy + Delta-G solvation = -3797.300979 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.52446 -40.86817 -39.11454 -38.27581 -36.19284 -34.59884 -34.21773 -32.41579 -31.65068 -30.70076 -29.80659 -27.71364 -27.16118 -25.42756 -23.68942 -23.07857 -21.94637 -21.58094 -20.51961 -19.22041 -18.71641 -18.19549 -17.82628 -17.18953 -16.92457 -16.62904 -16.22840 -16.11538 -15.42742 -15.23214 -14.91083 -14.76855 -14.50766 -14.28186 -14.17646 -13.96148 -13.89238 -13.59512 -13.44732 -13.23360 -13.22163 -13.07983 -12.84771 -12.61516 -12.48500 -12.40136 -12.25450 -12.13666 -11.86157 -11.74186 -11.29795 -11.00442 -10.64315 -10.16068 -9.70742 -9.65252 -9.11442 -8.24449 -6.38517 0.29885 0.37493 1.32371 1.40800 1.43870 1.47814 1.56070 2.37396 2.43177 2.72084 2.99889 3.13809 3.30365 3.62546 3.76387 3.79701 3.88169 3.96860 4.06838 4.25032 4.30546 4.35960 4.40786 4.48098 4.54609 4.55553 4.62545 4.71627 4.77245 4.77671 4.85489 4.96806 5.14296 5.17386 5.27291 5.41078 5.44697 5.46634 5.54871 5.55103 5.64890 5.77284 6.07466 6.16539 6.43225 6.64801 6.92507 7.31483 7.40268 8.81512 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.031815 B = 0.002931 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.874764 B = 9552.144554 C =10099.095254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.117 4.117 3 C -0.087 4.087 4 C -0.138 4.138 5 C -0.078 4.078 6 C -0.180 4.180 7 C 0.067 3.933 8 O -0.305 6.305 9 C 0.076 3.924 10 H 0.139 0.861 11 C 0.524 3.476 12 O -0.581 6.581 13 N -0.599 5.599 14 C 0.096 3.904 15 C -0.125 4.125 16 C 0.236 3.764 17 O -0.592 6.592 18 C -0.561 4.561 19 H 0.052 0.948 20 C 0.040 3.960 21 N -0.903 5.903 22 Si 0.957 3.043 23 H -0.276 1.276 24 H -0.281 1.281 25 H -0.274 1.274 26 C 0.125 3.875 27 C -0.091 4.091 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.045 0.955 31 H 0.162 0.838 32 H 0.162 0.838 33 H 0.148 0.852 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.379 0.621 39 H 0.271 0.729 40 H 0.077 0.923 41 H 0.044 0.956 42 H 0.131 0.869 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.349 19.630 6.659 20.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.118 4.118 3 C -0.104 4.104 4 C -0.156 4.156 5 C -0.096 4.096 6 C -0.181 4.181 7 C 0.023 3.977 8 O -0.218 6.218 9 C 0.017 3.983 10 H 0.156 0.844 11 C 0.312 3.688 12 O -0.462 6.462 13 N -0.332 5.332 14 C -0.025 4.025 15 C -0.164 4.164 16 C 0.196 3.804 17 O -0.401 6.401 18 C -0.599 4.599 19 H 0.071 0.929 20 C -0.162 4.162 21 N -0.542 5.542 22 Si 0.783 3.217 23 H -0.201 1.201 24 H -0.207 1.207 25 H -0.200 1.200 26 C 0.003 3.997 27 C -0.128 4.128 28 H 0.096 0.904 29 H 0.108 0.892 30 H 0.064 0.936 31 H 0.179 0.821 32 H 0.179 0.821 33 H 0.166 0.834 34 H 0.101 0.899 35 H 0.113 0.887 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.228 0.772 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.063 0.937 42 H 0.149 0.851 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.462 19.714 5.977 21.078 hybrid contribution 0.680 -1.968 -0.145 2.087 sum -3.783 17.746 5.832 19.059 Atomic orbital electron populations 1.20708 0.89916 1.02927 1.02950 1.19521 0.97353 0.89498 1.05432 1.21184 0.94769 0.96663 0.97820 1.21461 0.94122 0.98564 1.01460 1.20663 1.01188 0.89963 0.97813 1.20870 0.93270 0.95782 1.08133 1.19858 0.93037 0.85166 0.99651 1.86863 1.37730 1.14216 1.83026 1.23138 0.87653 0.87392 1.00129 0.84370 1.20241 0.80677 0.85119 0.82761 1.90680 1.37288 1.82225 1.35961 1.48496 1.30805 1.13212 1.40675 1.22468 0.88232 1.00045 0.91787 1.22957 1.00553 0.93866 0.98982 1.19786 0.84949 0.90598 0.85082 1.86133 1.22260 1.78062 1.53607 1.21662 0.96407 0.92003 1.49874 0.92949 1.25542 0.95097 1.02489 0.93079 1.69762 1.00581 1.36888 1.46937 0.85522 0.77856 0.80434 0.77846 1.20117 1.20729 1.19972 1.22269 0.98270 0.82261 0.96934 1.21704 0.96668 0.90177 1.04228 0.90361 0.89170 0.93582 0.82067 0.82077 0.83415 0.89881 0.88731 0.90120 0.91666 0.77178 0.91931 0.90538 0.93696 0.85071 0.90496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.12 9.98 71.24 0.71 -1.41 16 2 C -0.12 -2.68 5.90 -19.69 -0.12 -2.80 16 3 C -0.09 -1.42 9.66 22.21 0.21 -1.21 16 4 C -0.14 -2.09 10.07 22.31 0.22 -1.86 16 5 C -0.08 -1.46 10.03 22.18 0.22 -1.24 16 6 C -0.18 -4.46 6.27 -19.53 -0.12 -4.58 16 7 C 0.07 1.93 6.73 22.68 0.15 2.08 16 8 O -0.30 -10.48 10.26 -76.98 -0.79 -11.27 16 9 C 0.08 2.30 3.41 30.43 0.10 2.40 16 10 H 0.14 3.27 8.14 -2.39 -0.02 3.25 16 11 C 0.52 20.51 7.18 87.66 0.63 21.14 16 12 O -0.58 -28.22 16.83 15.09 0.25 -27.97 16 13 N -0.60 -22.89 3.32 -811.35 -2.70 -25.59 16 14 C 0.10 3.01 6.25 86.73 0.54 3.55 16 15 C -0.12 -4.94 5.37 31.78 0.17 -4.77 16 16 C 0.24 11.07 0.87 -10.07 -0.01 11.06 16 17 O -0.59 -29.43 13.17 -148.98 -1.96 -31.39 16 18 C -0.56 -28.82 8.27 25.60 0.21 -28.61 16 19 H 0.05 2.75 7.79 -2.91 -0.02 2.73 16 20 C 0.04 1.97 5.29 84.66 0.45 2.42 16 21 N -0.90 -44.40 10.76 21.45 0.23 -44.17 16 22 Si 0.96 40.39 29.54 68.60 2.03 42.42 16 23 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 24 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 25 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 26 C 0.13 5.61 6.09 86.93 0.53 6.14 16 27 C -0.09 -2.31 5.59 30.73 0.17 -2.14 16 28 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.09 1.27 8.08 -2.39 -0.02 1.25 16 30 H 0.05 1.12 8.00 -2.39 -0.02 1.10 16 31 H 0.16 1.55 8.06 -2.91 -0.02 1.52 16 32 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 33 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 34 H 0.08 2.29 6.51 -2.39 -0.02 2.27 16 35 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.08 3.31 7.55 -2.39 -0.02 3.30 16 37 H 0.06 2.61 8.04 -2.39 -0.02 2.59 16 38 H 0.38 18.65 7.57 -74.06 -0.56 18.09 16 39 H 0.27 12.69 8.31 -92.71 -0.77 11.92 16 40 H 0.08 3.35 8.03 -2.39 -0.02 3.33 16 41 H 0.04 2.22 8.03 -2.38 -0.02 2.20 16 42 H 0.13 2.47 7.27 -2.39 -0.02 2.45 16 43 H 0.08 2.28 7.92 -2.39 -0.02 2.26 16 Total: -1.00 -66.90 353.88 1.62 -65.28 By element: Atomic # 1 Polarization: 32.03 SS G_CDS: 0.47 Total: 32.51 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: 4.08 Total: 0.19 kcal Atomic # 7 Polarization: -67.29 SS G_CDS: -2.47 Total: -69.76 kcal Atomic # 8 Polarization: -68.13 SS G_CDS: -2.50 Total: -70.63 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 2.03 Total: 42.42 kcal Total: -66.90 1.62 -65.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592853146.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.608 kcal (2) G-P(sol) polarization free energy of solvation -66.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds