Wall clock time and date at job start Tue Mar 31 2020 11:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 119.99886 * 2 1 4 4 H 1.48500 * 109.47419 * 240.00081 * 3 2 1 5 5 H 1.48498 * 109.47230 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47325 * 120.00325 * 3 2 1 7 7 C 1.37878 * 120.00155 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00077 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00238 * 0.02562 * 7 2 1 10 10 O 1.42902 * 110.77870 * 56.75785 * 9 7 2 11 11 C 1.55448 * 110.70612 * 293.54739 * 9 7 2 12 12 C 1.54905 * 101.45165 * 206.14440 * 11 9 7 13 13 N 1.47419 * 104.92834 * 37.00468 * 12 11 9 14 14 C 1.34780 * 125.65139 * 155.80015 * 13 12 11 15 15 O 1.21278 * 120.00092 * 179.97438 * 14 13 12 16 16 C 1.50698 * 119.99648 * 359.97096 * 14 13 12 17 17 H 1.09002 * 115.55451 * 34.41456 * 16 14 13 18 18 C 1.53006 * 117.49858 * 248.75143 * 16 14 13 19 19 C 1.53003 * 117.50063 * 180.09355 * 16 14 13 20 20 H 1.09001 * 117.49307 * 359.97048 * 19 16 14 21 21 C 1.50704 * 117.49799 * 214.98046 * 19 16 14 22 22 C 1.38287 * 119.96685 * 299.72028 * 21 19 16 23 23 C 1.38242 * 120.10625 * 179.72776 * 22 21 19 24 24 C 1.38165 * 120.05631 * 0.54852 * 23 22 21 25 25 C 1.38707 * 119.94657 * 359.72545 * 24 23 22 26 26 O 1.35900 * 120.06130 * 179.97438 * 25 24 23 27 27 C 1.38116 * 119.97012 * 119.99449 * 21 19 16 28 28 C 1.47026 * 108.70576 * 335.81449 * 13 12 11 29 29 H 0.96991 * 120.00306 * 359.97438 * 1 2 3 30 30 H 0.96694 * 113.99935 * 303.24085 * 10 9 7 31 31 H 1.09002 * 111.11560 * 88.08755 * 11 9 7 32 32 H 1.09004 * 111.00873 * 324.15164 * 11 9 7 33 33 H 1.09002 * 110.36692 * 278.10842 * 12 11 9 34 34 H 1.08995 * 110.36664 * 155.89643 * 12 11 9 35 35 H 1.08999 * 117.49607 * 359.97438 * 18 16 14 36 36 H 1.08999 * 117.49993 * 145.01805 * 18 16 14 37 37 H 1.07995 * 119.94956 * 359.97438 * 22 21 19 38 38 H 1.08006 * 119.97655 * 180.25420 * 23 22 21 39 39 H 1.08007 * 120.03088 * 179.70702 * 24 23 22 40 40 H 0.96697 * 113.99763 * 270.02112 * 26 25 24 41 41 H 1.07994 * 120.03565 * 0.02562 * 27 21 19 42 42 H 1.08998 * 109.88266 * 120.47537 * 28 13 12 43 43 H 1.09000 * 109.88221 * 241.64354 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 8 0.3638 -2.5714 -1.1195 11 6 0.4727 -2.6857 1.3309 12 6 0.3793 -4.2294 1.4190 13 7 1.6650 -4.7186 0.8890 14 6 2.2307 -5.9082 1.1743 15 8 3.2961 -6.2075 0.6781 16 6 1.5394 -6.8662 2.1099 17 1 0.4504 -6.8656 2.0632 18 6 2.1878 -7.1136 3.4735 19 6 2.2336 -8.1994 2.3955 20 1 3.1900 -8.3838 1.9063 21 6 1.3592 -9.4112 2.5911 22 6 0.4319 -9.4357 3.6166 23 6 -0.3755 -10.5436 3.7952 24 6 -0.2498 -11.6339 2.9559 25 6 0.6835 -11.6141 1.9300 26 8 0.8094 -12.6854 1.1034 27 6 1.4888 -10.4986 1.7493 28 6 2.2282 -3.6937 -0.0021 29 1 -0.4850 0.8399 0.0004 30 1 -0.2709 -1.8433 -1.1655 31 1 -0.5189 -2.2369 1.2725 32 1 1.0348 -2.2796 2.1719 33 1 -0.4465 -4.5950 0.8086 34 1 0.2521 -4.5432 2.4551 35 1 3.1146 -6.5838 3.6936 36 1 1.5254 -7.2762 4.3237 37 1 0.3355 -8.5864 4.2767 38 1 -1.1019 -10.5588 4.5943 39 1 -0.8776 -12.5011 3.0987 40 1 1.4496 -13.3434 1.4072 41 1 2.2165 -10.4809 0.9515 42 1 3.2027 -3.3755 0.3681 43 1 2.3251 -4.0930 -1.0117 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592854087.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:39 Heat of formation + Delta-G solvation = -75.427854 kcal Electronic energy + Delta-G solvation = -25872.796725 eV Core-core repulsion = 22076.773113 eV Total energy + Delta-G solvation = -3796.023612 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.39616 -39.53026 -37.97240 -37.05460 -35.65886 -34.34183 -32.17989 -31.18795 -29.93787 -29.61280 -28.41603 -25.73886 -24.14057 -23.63374 -22.72696 -21.99726 -20.80338 -19.65610 -18.65103 -18.17555 -17.35630 -17.09319 -16.61844 -15.87167 -15.42299 -15.30689 -15.02116 -14.94299 -14.70931 -14.14317 -13.89143 -13.54583 -13.10936 -12.98308 -12.82324 -12.39004 -12.10455 -12.03119 -11.89919 -11.78981 -11.59037 -11.41682 -11.37850 -10.90582 -10.83389 -10.73914 -10.63880 -10.54185 -10.46107 -10.14926 -9.52252 -9.37351 -9.01113 -8.74395 -8.68523 -8.23838 -8.03636 -6.32385 -4.39719 0.96150 1.06699 2.78971 3.19959 3.24907 3.25676 3.28980 3.47465 3.91453 3.98262 4.24192 4.43351 4.62835 4.71787 4.81351 4.85962 4.89125 4.95219 5.09229 5.18387 5.32589 5.51094 5.55484 5.63586 5.70447 5.75162 5.86883 5.90822 5.95545 6.01951 6.15255 6.17718 6.20994 6.38521 6.43508 6.56065 6.66502 6.88134 6.94252 7.26450 7.30758 7.38490 7.70619 7.97053 8.08573 8.58309 8.63313 9.28691 9.42845 10.75477 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.029414 B = 0.002496 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.690154 B =11215.872311 C =11303.914589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.904 3.096 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.535 4.535 8 H 0.064 0.936 9 C 0.248 3.752 10 O -0.587 6.587 11 C -0.137 4.137 12 C 0.096 3.904 13 N -0.602 5.602 14 C 0.550 3.450 15 O -0.555 6.555 16 C -0.165 4.165 17 H 0.123 0.877 18 C -0.143 4.143 19 C -0.091 4.091 20 H 0.128 0.872 21 C -0.030 4.030 22 C -0.129 4.129 23 C -0.100 4.100 24 C -0.152 4.152 25 C 0.106 3.894 26 O -0.499 6.499 27 C -0.135 4.135 28 C 0.122 3.878 29 H 0.270 0.730 30 H 0.386 0.614 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.389 0.611 41 H 0.131 0.869 42 H 0.072 0.928 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.675 -18.448 10.051 21.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.130 4.130 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.574 4.574 8 H 0.082 0.918 9 C 0.208 3.792 10 O -0.397 6.397 11 C -0.176 4.176 12 C -0.026 4.026 13 N -0.334 5.334 14 C 0.338 3.662 15 O -0.435 6.435 16 C -0.186 4.186 17 H 0.141 0.859 18 C -0.180 4.180 19 C -0.109 4.109 20 H 0.146 0.854 21 C -0.031 4.031 22 C -0.147 4.147 23 C -0.118 4.118 24 C -0.171 4.171 25 C 0.061 3.939 26 O -0.310 6.310 27 C -0.153 4.153 28 C 0.001 3.999 29 H 0.080 0.920 30 H 0.238 0.762 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.245 0.755 41 H 0.149 0.851 42 H 0.090 0.910 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.329 -18.779 9.328 21.010 hybrid contribution 0.245 1.210 0.351 1.283 sum -1.083 -17.569 9.679 20.088 Atomic orbital electron populations 1.69559 1.05976 1.27879 1.50371 1.24989 0.95043 0.99568 0.93429 0.86448 0.79526 0.81954 0.78906 1.19960 1.21079 1.20060 1.21507 0.93696 0.90229 1.51921 0.91750 1.19484 0.86138 0.90721 0.82892 1.86100 1.51310 1.53280 1.48997 1.23366 1.02814 0.90280 1.01108 1.22488 0.85158 0.97642 0.97357 1.48529 1.22555 1.15997 1.46320 1.19116 0.84713 0.80762 0.81586 1.90653 1.22620 1.76052 1.54136 1.22321 1.00215 0.97087 0.98998 0.85878 1.23130 1.03025 1.00846 0.91028 1.21092 1.00070 0.86450 1.03326 0.85438 1.19029 0.95653 0.93693 0.94681 1.21134 0.96180 0.98904 0.98441 1.21002 0.98867 0.92980 0.99001 1.21414 1.00234 1.00032 0.95375 1.18435 0.96168 0.88435 0.90815 1.84841 1.65386 1.32228 1.48499 1.21290 1.00419 0.93528 1.00107 1.22101 0.97441 0.87557 0.92836 0.92010 0.76177 0.89624 0.91433 0.91941 0.92021 0.87592 0.87465 0.85394 0.85480 0.85554 0.75502 0.85132 0.91000 0.92045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.81 10.71 55.43 0.59 -22.21 16 2 C 0.07 1.83 5.28 -17.82 -0.09 1.74 16 3 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.54 -13.87 8.22 -34.44 -0.28 -14.16 16 8 H 0.06 1.67 7.53 -52.48 -0.40 1.28 16 9 C 0.25 5.95 0.86 -89.78 -0.08 5.88 16 10 O -0.59 -14.81 13.09 -35.23 -0.46 -15.27 16 11 C -0.14 -2.90 5.69 -24.43 -0.14 -3.04 16 12 C 0.10 1.72 6.46 -2.53 -0.02 1.71 16 13 N -0.60 -11.93 3.33 -170.53 -0.57 -12.50 16 14 C 0.55 10.31 7.63 -10.98 -0.08 10.23 16 15 O -0.55 -12.06 16.58 5.56 0.09 -11.96 16 16 C -0.17 -2.30 4.89 -91.77 -0.45 -2.75 16 17 H 0.12 1.58 7.78 -51.93 -0.40 1.17 16 18 C -0.14 -1.59 9.57 -26.69 -0.26 -1.84 16 19 C -0.09 -1.12 5.56 -91.73 -0.51 -1.63 16 20 H 0.13 1.72 7.67 -51.93 -0.40 1.32 16 21 C -0.03 -0.34 5.61 -104.65 -0.59 -0.93 16 22 C -0.13 -1.22 9.30 -39.56 -0.37 -1.59 16 23 C -0.10 -0.86 10.04 -39.61 -0.40 -1.26 16 24 C -0.15 -1.39 9.99 -39.43 -0.39 -1.78 16 25 C 0.11 1.09 6.71 -39.21 -0.26 0.83 16 26 O -0.50 -4.63 13.50 -19.43 -0.26 -4.89 16 27 C -0.13 -1.51 9.68 -39.43 -0.38 -1.89 16 28 C 0.12 2.77 6.22 -3.06 -0.02 2.75 16 29 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 30 H 0.39 9.80 6.99 45.56 0.32 10.12 16 31 H 0.09 1.88 7.78 -51.93 -0.40 1.47 16 32 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.06 0.92 7.66 -51.93 -0.40 0.52 16 35 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.11 0.91 6.17 -51.93 -0.32 0.59 16 37 H 0.13 1.01 6.01 -52.49 -0.32 0.69 16 38 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 39 H 0.13 0.93 8.06 -52.48 -0.42 0.50 16 40 H 0.39 1.61 9.06 45.56 0.41 2.03 16 41 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 42 H 0.07 1.65 7.63 -51.93 -0.40 1.25 16 43 H 0.06 1.46 8.07 -51.93 -0.42 1.04 16 LS Contribution 358.93 15.07 5.41 5.41 Total: -1.00 -30.36 358.93 -8.92 -39.28 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -4.39 Total: 14.84 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -4.32 Total: -7.73 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: 0.03 Total: -34.71 kcal Atomic # 8 Polarization: -31.50 SS G_CDS: -0.63 Total: -32.13 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.36 -8.92 -39.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592854087.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.145 kcal (2) G-P(sol) polarization free energy of solvation -30.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds