Wall clock time and date at job start Tue Mar 31 2020 11:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 119.99886 * 2 1 4 4 H 1.48500 * 109.47419 * 240.00081 * 3 2 1 5 5 H 1.48498 * 109.47230 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47325 * 120.00325 * 3 2 1 7 7 C 1.37878 * 120.00155 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00077 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00238 * 0.02562 * 7 2 1 10 10 O 1.42902 * 110.77870 * 56.75785 * 9 7 2 11 11 C 1.55448 * 110.70612 * 293.54739 * 9 7 2 12 12 C 1.54905 * 101.45165 * 206.14440 * 11 9 7 13 13 N 1.47419 * 104.92834 * 37.00468 * 12 11 9 14 14 C 1.34780 * 125.65139 * 155.80015 * 13 12 11 15 15 O 1.21278 * 120.00092 * 179.97438 * 14 13 12 16 16 C 1.50698 * 119.99648 * 359.97096 * 14 13 12 17 17 H 1.09002 * 115.55451 * 34.41456 * 16 14 13 18 18 C 1.53006 * 117.49858 * 248.75143 * 16 14 13 19 19 C 1.53003 * 117.50063 * 180.09355 * 16 14 13 20 20 H 1.09001 * 117.49307 * 359.97048 * 19 16 14 21 21 C 1.50704 * 117.49799 * 214.98046 * 19 16 14 22 22 C 1.38287 * 119.96685 * 299.72028 * 21 19 16 23 23 C 1.38242 * 120.10625 * 179.72776 * 22 21 19 24 24 C 1.38165 * 120.05631 * 0.54852 * 23 22 21 25 25 C 1.38707 * 119.94657 * 359.72545 * 24 23 22 26 26 O 1.35900 * 120.06130 * 179.97438 * 25 24 23 27 27 C 1.38116 * 119.97012 * 119.99449 * 21 19 16 28 28 C 1.47026 * 108.70576 * 335.81449 * 13 12 11 29 29 H 0.96991 * 120.00306 * 359.97438 * 1 2 3 30 30 H 0.96694 * 113.99935 * 303.24085 * 10 9 7 31 31 H 1.09002 * 111.11560 * 88.08755 * 11 9 7 32 32 H 1.09004 * 111.00873 * 324.15164 * 11 9 7 33 33 H 1.09002 * 110.36692 * 278.10842 * 12 11 9 34 34 H 1.08995 * 110.36664 * 155.89643 * 12 11 9 35 35 H 1.08999 * 117.49607 * 359.97438 * 18 16 14 36 36 H 1.08999 * 117.49993 * 145.01805 * 18 16 14 37 37 H 1.07995 * 119.94956 * 359.97438 * 22 21 19 38 38 H 1.08006 * 119.97655 * 180.25420 * 23 22 21 39 39 H 1.08007 * 120.03088 * 179.70702 * 24 23 22 40 40 H 0.96697 * 113.99763 * 270.02112 * 26 25 24 41 41 H 1.07994 * 120.03565 * 0.02562 * 27 21 19 42 42 H 1.08998 * 109.88266 * 120.47537 * 28 13 12 43 43 H 1.09000 * 109.88221 * 241.64354 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 8 0.3638 -2.5714 -1.1195 11 6 0.4727 -2.6857 1.3309 12 6 0.3793 -4.2294 1.4190 13 7 1.6650 -4.7186 0.8890 14 6 2.2307 -5.9082 1.1743 15 8 3.2961 -6.2075 0.6781 16 6 1.5394 -6.8662 2.1099 17 1 0.4504 -6.8656 2.0632 18 6 2.1878 -7.1136 3.4735 19 6 2.2336 -8.1994 2.3955 20 1 3.1900 -8.3838 1.9063 21 6 1.3592 -9.4112 2.5911 22 6 0.4319 -9.4357 3.6166 23 6 -0.3755 -10.5436 3.7952 24 6 -0.2498 -11.6339 2.9559 25 6 0.6835 -11.6141 1.9300 26 8 0.8094 -12.6854 1.1034 27 6 1.4888 -10.4986 1.7493 28 6 2.2282 -3.6937 -0.0021 29 1 -0.4850 0.8399 0.0004 30 1 -0.2709 -1.8433 -1.1655 31 1 -0.5189 -2.2369 1.2725 32 1 1.0348 -2.2796 2.1719 33 1 -0.4465 -4.5950 0.8086 34 1 0.2521 -4.5432 2.4551 35 1 3.1146 -6.5838 3.6936 36 1 1.5254 -7.2762 4.3237 37 1 0.3355 -8.5864 4.2767 38 1 -1.1019 -10.5588 4.5943 39 1 -0.8776 -12.5011 3.0987 40 1 1.4496 -13.3434 1.4072 41 1 2.2165 -10.4809 0.9515 42 1 3.2027 -3.3755 0.3681 43 1 2.3251 -4.0930 -1.0117 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592854087.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:38 Heat of formation + Delta-G solvation = -96.419385 kcal Electronic energy + Delta-G solvation = -25873.706986 eV Core-core repulsion = 22076.773113 eV Total energy + Delta-G solvation = -3796.933873 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.49005 -40.65547 -39.34003 -38.21640 -36.61000 -36.13411 -34.16364 -32.00277 -31.46580 -30.49918 -30.09456 -27.47218 -25.30197 -24.72551 -23.62522 -23.31677 -21.71106 -21.37382 -20.07109 -19.23527 -18.95063 -18.34563 -17.46042 -17.06943 -16.94883 -16.68814 -16.31888 -16.15481 -15.98477 -15.61278 -15.01762 -14.80243 -14.62703 -14.22801 -13.85629 -13.66215 -13.57407 -13.36498 -13.25430 -13.14433 -13.01371 -12.67754 -12.65900 -12.55499 -12.44490 -12.29255 -12.00730 -11.75937 -11.58295 -11.32345 -11.30498 -10.95397 -10.63652 -10.15455 -9.75092 -9.66450 -9.47808 -8.26605 -6.40827 0.24292 0.35211 1.42491 1.43283 1.44602 1.51540 1.95169 2.38756 2.54263 2.98623 3.00696 3.20444 3.45364 3.69614 3.76262 3.83612 3.92760 3.98683 4.04489 4.17834 4.22469 4.26510 4.35934 4.40267 4.56490 4.64033 4.65521 4.72464 4.87500 4.91220 4.99047 5.01877 5.09909 5.16182 5.24184 5.44740 5.46663 5.48667 5.50438 5.62748 5.74980 5.91925 6.04059 6.55347 6.63422 6.85281 7.08495 7.29944 7.43303 8.79751 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.029414 B = 0.002496 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.690154 B =11215.872311 C =11303.914589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.037 3.963 3 Si 0.960 3.040 4 H -0.279 1.279 5 H -0.277 1.277 6 H -0.272 1.272 7 C -0.564 4.564 8 H 0.052 0.948 9 C 0.235 3.765 10 O -0.596 6.596 11 C -0.127 4.127 12 C 0.106 3.894 13 N -0.607 5.607 14 C 0.544 3.456 15 O -0.595 6.595 16 C -0.177 4.177 17 H 0.143 0.857 18 C -0.117 4.117 19 C -0.088 4.088 20 H 0.105 0.895 21 C -0.042 4.042 22 C -0.129 4.129 23 C -0.096 4.096 24 C -0.155 4.155 25 C 0.097 3.903 26 O -0.514 6.514 27 C -0.158 4.158 28 C 0.128 3.872 29 H 0.274 0.726 30 H 0.383 0.617 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.146 0.854 37 H 0.151 0.849 38 H 0.158 0.842 39 H 0.145 0.855 40 H 0.409 0.591 41 H 0.118 0.882 42 H 0.060 0.940 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.284 -19.296 12.658 23.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.164 4.164 3 Si 0.786 3.214 4 H -0.205 1.205 5 H -0.201 1.201 6 H -0.197 1.197 7 C -0.602 4.602 8 H 0.070 0.930 9 C 0.195 3.805 10 O -0.406 6.406 11 C -0.166 4.166 12 C -0.016 4.016 13 N -0.338 5.338 14 C 0.335 3.665 15 O -0.477 6.477 16 C -0.198 4.198 17 H 0.160 0.840 18 C -0.154 4.154 19 C -0.107 4.107 20 H 0.123 0.877 21 C -0.042 4.042 22 C -0.147 4.147 23 C -0.114 4.114 24 C -0.173 4.173 25 C 0.053 3.947 26 O -0.327 6.327 27 C -0.177 4.177 28 C 0.005 3.995 29 H 0.083 0.917 30 H 0.234 0.766 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.123 0.877 35 H 0.118 0.882 36 H 0.163 0.837 37 H 0.168 0.832 38 H 0.175 0.825 39 H 0.163 0.837 40 H 0.268 0.732 41 H 0.136 0.864 42 H 0.078 0.922 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.945 -19.652 11.954 23.190 hybrid contribution 0.782 1.396 -0.515 1.681 sum -2.164 -18.256 11.439 21.652 Atomic orbital electron populations 1.69612 1.06560 1.28634 1.49842 1.25593 0.95897 1.01974 0.92945 0.85577 0.78486 0.78767 0.78581 1.20452 1.20144 1.19712 1.21714 0.93443 0.91774 1.53271 0.92984 1.19648 0.86506 0.90468 0.83886 1.86087 1.51417 1.53068 1.50032 1.23149 1.01567 0.92894 0.98992 1.22510 0.84220 0.94982 0.99888 1.48606 1.23188 1.16008 1.46035 1.20038 0.84303 0.80664 0.81487 1.90628 1.24610 1.76758 1.55684 1.22262 1.00736 0.96868 0.99889 0.83972 1.23317 1.02904 0.98557 0.90620 1.20999 0.99195 0.86763 1.03747 0.87713 1.18983 0.96484 0.93017 0.95762 1.21382 0.95400 0.99985 0.97890 1.21376 0.98731 0.92086 0.99196 1.21700 0.99766 1.01035 0.94802 1.18572 0.96443 0.88397 0.91308 1.84780 1.66285 1.32583 1.49037 1.21359 1.01157 0.94603 1.00541 1.21812 0.97026 0.88220 0.92469 0.91681 0.76557 0.90393 0.91987 0.91342 0.87740 0.88193 0.83662 0.83171 0.82466 0.83746 0.73189 0.86393 0.92212 0.94250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.90 10.71 21.45 0.23 -45.67 16 2 C 0.04 1.89 5.28 84.66 0.45 2.34 16 3 Si 0.96 41.08 29.54 68.60 2.03 43.11 16 4 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 5 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 6 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.56 -29.86 8.22 25.60 0.21 -29.65 16 8 H 0.05 2.80 7.53 -2.91 -0.02 2.78 16 9 C 0.24 11.50 0.86 -10.25 -0.01 11.49 16 10 O -0.60 -30.74 13.09 -148.98 -1.95 -32.69 16 11 C -0.13 -5.33 5.69 32.09 0.18 -5.14 16 12 C 0.11 3.59 6.46 86.85 0.56 4.15 16 13 N -0.61 -23.97 3.33 -811.82 -2.70 -26.67 16 14 C 0.54 20.37 7.63 87.66 0.67 21.04 16 15 O -0.59 -26.71 16.58 -3.02 -0.05 -26.76 16 16 C -0.18 -4.58 4.89 -11.54 -0.06 -4.64 16 17 H 0.14 3.16 7.78 -2.39 -0.02 3.14 16 18 C -0.12 -2.25 9.57 30.62 0.29 -1.96 16 19 C -0.09 -2.08 5.56 -11.51 -0.06 -2.14 16 20 H 0.10 2.93 7.67 -2.39 -0.02 2.91 16 21 C -0.04 -0.87 5.61 -19.88 -0.11 -0.98 16 22 C -0.13 -1.98 9.30 22.28 0.21 -1.77 16 23 C -0.10 -1.27 10.04 22.25 0.22 -1.05 16 24 C -0.15 -2.39 9.99 22.36 0.22 -2.16 16 25 C 0.10 1.88 6.71 22.51 0.15 2.03 16 26 O -0.51 -9.07 13.50 -92.43 -1.25 -10.31 16 27 C -0.16 -3.49 9.68 22.37 0.22 -3.27 16 28 C 0.13 6.00 6.22 86.73 0.54 6.54 16 29 H 0.27 13.16 8.31 -92.71 -0.77 12.39 16 30 H 0.38 19.81 6.99 -74.06 -0.52 19.29 16 31 H 0.08 3.37 7.78 -2.39 -0.02 3.35 16 32 H 0.06 2.63 8.04 -2.38 -0.02 2.61 16 33 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.10 2.70 7.66 -2.39 -0.02 2.68 16 35 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.15 1.70 6.17 -2.39 -0.01 1.68 16 37 H 0.15 1.56 6.01 -2.91 -0.02 1.54 16 38 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 39 H 0.14 1.65 8.06 -2.91 -0.02 1.62 16 40 H 0.41 3.02 9.06 -74.06 -0.67 2.35 16 41 H 0.12 2.75 8.06 -2.91 -0.02 2.73 16 42 H 0.06 2.89 7.63 -2.39 -0.02 2.87 16 43 H 0.04 1.97 8.07 -2.39 -0.02 1.95 16 Total: -1.00 -67.46 358.93 -0.14 -67.61 By element: Atomic # 1 Polarization: 36.70 SS G_CDS: -0.13 Total: 36.57 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: 3.68 Total: -5.18 kcal Atomic # 7 Polarization: -69.87 SS G_CDS: -2.47 Total: -72.34 kcal Atomic # 8 Polarization: -66.51 SS G_CDS: -3.25 Total: -69.76 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Total: -67.46 -0.14 -67.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592854087.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.814 kcal (2) G-P(sol) polarization free energy of solvation -67.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds