Wall clock time and date at job start Tue Mar 31 2020 11:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00101 * 2 1 4 4 H 1.48507 * 109.47047 * 240.00224 * 3 2 1 5 5 H 1.48500 * 109.47239 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47306 * 120.00090 * 3 2 1 7 7 C 1.37875 * 120.00102 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00153 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00136 * 359.97438 * 7 2 1 10 10 O 1.42908 * 110.63842 * 298.31206 * 9 7 2 11 11 C 1.55160 * 110.72114 * 61.45080 * 9 7 2 12 12 C 1.54905 * 101.57970 * 153.86535 * 11 9 7 13 13 N 1.47427 * 104.83654 * 322.99386 * 12 11 9 14 14 C 1.34775 * 125.64722 * 204.08981 * 13 12 11 15 15 O 1.21286 * 119.99711 * 180.02562 * 14 13 12 16 16 C 1.50697 * 120.00215 * 0.02648 * 14 13 12 17 17 H 1.09002 * 115.54932 * 34.41541 * 16 14 13 18 18 C 1.53000 * 117.50034 * 248.74477 * 16 14 13 19 19 C 1.53002 * 117.49992 * 180.08704 * 16 14 13 20 20 H 1.08999 * 117.49664 * 0.02562 * 19 16 14 21 21 C 1.50695 * 117.50044 * 215.00770 * 19 16 14 22 22 C 1.38295 * 119.96937 * 299.72124 * 21 19 16 23 23 C 1.38242 * 120.11218 * 179.72823 * 22 21 19 24 24 C 1.38162 * 120.05593 * 0.54667 * 23 22 21 25 25 C 1.38716 * 119.94177 * 359.72746 * 24 23 22 26 26 O 1.35899 * 120.05335 * 179.97438 * 25 24 23 27 27 C 1.38122 * 119.97799 * 119.99665 * 21 19 16 28 28 C 1.47024 * 108.70039 * 24.35775 * 13 12 11 29 29 H 0.97002 * 120.00043 * 359.97438 * 1 2 3 30 30 H 0.96703 * 113.99790 * 61.68938 * 10 9 7 31 31 H 1.09000 * 110.99835 * 35.79349 * 11 9 7 32 32 H 1.08990 * 111.00565 * 271.94180 * 11 9 7 33 33 H 1.09003 * 110.37000 * 204.15673 * 12 11 9 34 34 H 1.08997 * 110.36548 * 81.83613 * 12 11 9 35 35 H 1.09008 * 117.49673 * 359.97438 * 18 16 14 36 36 H 1.08999 * 117.49942 * 144.97208 * 18 16 14 37 37 H 1.08007 * 119.94247 * 359.97438 * 22 21 19 38 38 H 1.07999 * 119.97210 * 180.25836 * 23 22 21 39 39 H 1.07999 * 120.03011 * 179.70813 * 24 23 22 40 40 H 0.96701 * 114.00375 * 270.02426 * 26 25 24 41 41 H 1.07997 * 120.02256 * 0.02562 * 27 21 19 42 42 H 1.09000 * 109.88393 * 118.13128 * 28 13 12 43 43 H 1.09001 * 109.88043 * 239.29352 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 8 0.4504 -2.6185 1.1771 11 6 0.3754 -2.6275 -1.2750 12 6 0.2710 -4.1656 -1.4268 13 7 1.5923 -4.6759 -1.0182 14 6 2.1322 -5.8511 -1.3976 15 8 3.2317 -6.1706 -0.9976 16 6 1.3697 -6.7681 -2.3188 17 1 0.7517 -6.2738 -3.0684 18 6 0.8552 -8.0861 -1.7366 19 6 2.0355 -8.0886 -2.7112 20 1 3.0249 -8.2942 -2.3027 21 6 1.7869 -8.6061 -4.1045 22 6 0.4979 -8.8933 -4.5150 23 6 0.2659 -9.3629 -5.7944 24 6 1.3231 -9.5573 -6.6625 25 6 2.6175 -9.2754 -6.2512 26 8 3.6591 -9.4662 -7.1030 27 6 2.8472 -8.7988 -4.9685 28 6 2.2209 -3.6934 -0.1231 29 1 -0.4850 0.8401 0.0004 30 1 -0.2277 -1.9344 1.2627 31 1 0.8727 -2.1827 -2.1370 32 1 -0.6074 -2.1825 -1.1202 33 1 0.0658 -4.4314 -2.4638 34 1 -0.5067 -4.5594 -0.7724 35 1 1.0686 -8.2902 -0.6873 36 1 -0.1015 -8.4587 -2.1029 37 1 -0.3293 -8.7466 -3.8363 38 1 -0.7420 -9.5824 -6.1140 39 1 1.1418 -9.9286 -7.6603 40 1 4.0478 -10.3505 -7.0571 41 1 3.8541 -8.5790 -4.6457 42 1 2.3889 -4.1392 0.8573 43 1 3.1674 -3.3579 -0.5472 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592854094.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:42 Heat of formation + Delta-G solvation = -75.021281 kcal Electronic energy + Delta-G solvation = -25898.338627 eV Core-core repulsion = 22102.332646 eV Total energy + Delta-G solvation = -3796.005981 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.39465 -39.53312 -37.98332 -37.06006 -35.65729 -34.32885 -32.23631 -31.18573 -29.92099 -29.59222 -28.42582 -25.73381 -24.13909 -23.63365 -22.72611 -21.99277 -20.80477 -19.68265 -18.64565 -18.18128 -17.38947 -17.00233 -16.61557 -15.87203 -15.48468 -15.26613 -15.11903 -14.96414 -14.43446 -14.22215 -13.95756 -13.66940 -13.02540 -12.89209 -12.82034 -12.49483 -12.13062 -12.08921 -11.93070 -11.74940 -11.52249 -11.38130 -11.37350 -10.89648 -10.84120 -10.75044 -10.65420 -10.52219 -10.44082 -10.13195 -9.51764 -9.34925 -9.00913 -8.74073 -8.68173 -8.25181 -8.03732 -6.30457 -4.37967 0.96377 1.06986 2.79734 3.21402 3.25408 3.25930 3.30222 3.47455 3.91655 3.98401 4.25666 4.43820 4.62963 4.71573 4.81030 4.86384 4.89635 4.97399 5.09140 5.15879 5.32883 5.51829 5.54422 5.63455 5.68904 5.72586 5.88007 5.92782 5.96229 6.02243 6.15450 6.18072 6.20838 6.38730 6.42381 6.56333 6.67065 6.88465 6.94545 7.27588 7.32706 7.38873 7.71252 8.00049 8.08206 8.58840 8.64861 9.28001 9.37046 10.77075 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021300 B = 0.002638 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.263911 B =10610.744858 C =10873.646573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.064 0.936 9 C 0.247 3.753 10 O -0.585 6.585 11 C -0.135 4.135 12 C 0.096 3.904 13 N -0.602 5.602 14 C 0.550 3.450 15 O -0.555 6.555 16 C -0.165 4.165 17 H 0.124 0.876 18 C -0.143 4.143 19 C -0.091 4.091 20 H 0.128 0.872 21 C -0.030 4.030 22 C -0.129 4.129 23 C -0.100 4.100 24 C -0.152 4.152 25 C 0.106 3.894 26 O -0.499 6.499 27 C -0.135 4.135 28 C 0.123 3.877 29 H 0.269 0.731 30 H 0.382 0.618 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.389 0.611 41 H 0.131 0.869 42 H 0.061 0.939 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.486 -18.001 -10.610 21.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.730 3.270 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.574 4.574 8 H 0.082 0.918 9 C 0.207 3.793 10 O -0.394 6.394 11 C -0.174 4.174 12 C -0.027 4.027 13 N -0.334 5.334 14 C 0.338 3.662 15 O -0.435 6.435 16 C -0.186 4.186 17 H 0.142 0.858 18 C -0.180 4.180 19 C -0.110 4.110 20 H 0.146 0.854 21 C -0.031 4.031 22 C -0.147 4.147 23 C -0.119 4.119 24 C -0.170 4.170 25 C 0.061 3.939 26 O -0.309 6.309 27 C -0.153 4.153 28 C 0.001 3.999 29 H 0.078 0.922 30 H 0.232 0.768 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.245 0.755 41 H 0.149 0.851 42 H 0.079 0.921 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.754 -18.026 -10.474 20.921 hybrid contribution 0.091 1.094 -0.152 1.108 sum -1.663 -16.932 -10.626 20.059 Atomic orbital electron populations 1.69681 1.05939 1.27759 1.50164 1.24978 0.95044 0.99515 0.93445 0.86469 0.79552 0.82019 0.78914 1.20047 1.21103 1.19984 1.21471 0.93662 0.90204 1.52019 0.91827 1.19461 0.86956 0.90625 0.82239 1.86135 1.51846 1.56479 1.44978 1.23308 1.02906 0.90205 1.00967 1.22525 0.84276 0.97501 0.98384 1.48542 1.19412 1.17990 1.47423 1.19113 0.85544 0.80607 0.80935 1.90656 1.20720 1.74408 1.57707 1.22327 1.04073 0.89781 1.02461 0.85830 1.23121 0.98077 0.97213 0.99583 1.21087 0.99392 0.98332 0.92140 0.85447 1.19030 0.92906 0.97391 0.93731 1.21137 0.96569 1.00454 0.96507 1.20999 0.98794 0.98708 0.93355 1.21414 0.92322 1.02776 1.00537 1.18435 0.87076 0.99580 0.88763 1.84841 1.47677 1.37572 1.60859 1.21288 0.99993 1.01493 0.92557 1.22087 0.96786 0.88480 0.92532 0.92153 0.76770 0.91440 0.89298 0.92160 0.91818 0.87639 0.87471 0.85398 0.85484 0.85555 0.75500 0.85128 0.92070 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.74 10.67 55.43 0.59 -22.15 16 2 C 0.07 1.86 5.28 -17.82 -0.09 1.76 16 3 Si 0.90 20.21 29.54 -169.99 -5.02 15.19 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.54 -13.95 8.22 -34.44 -0.28 -14.24 16 8 H 0.06 1.67 7.58 -52.48 -0.40 1.27 16 9 C 0.25 5.92 0.85 -89.93 -0.08 5.84 16 10 O -0.59 -14.50 13.07 -35.23 -0.46 -14.96 16 11 C -0.14 -2.88 5.47 -24.58 -0.13 -3.01 16 12 C 0.10 1.71 6.68 -2.53 -0.02 1.69 16 13 N -0.60 -11.91 3.33 -170.51 -0.57 -12.48 16 14 C 0.55 10.30 7.63 -10.99 -0.08 10.22 16 15 O -0.56 -12.06 16.59 5.55 0.09 -11.97 16 16 C -0.17 -2.30 5.17 -91.77 -0.47 -2.78 16 17 H 0.12 1.58 7.07 -51.93 -0.37 1.21 16 18 C -0.14 -1.59 9.56 -26.70 -0.26 -1.84 16 19 C -0.09 -1.12 5.55 -91.74 -0.51 -1.63 16 20 H 0.13 1.72 7.67 -51.93 -0.40 1.32 16 21 C -0.03 -0.34 5.61 -104.65 -0.59 -0.93 16 22 C -0.13 -1.23 9.30 -39.56 -0.37 -1.60 16 23 C -0.10 -0.87 10.04 -39.61 -0.40 -1.26 16 24 C -0.15 -1.39 9.99 -39.43 -0.39 -1.78 16 25 C 0.11 1.09 6.70 -39.22 -0.26 0.83 16 26 O -0.50 -4.65 13.50 -19.42 -0.26 -4.91 16 27 C -0.13 -1.51 9.68 -39.44 -0.38 -1.89 16 28 C 0.12 2.78 6.23 -3.06 -0.02 2.76 16 29 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 30 H 0.38 9.42 7.46 45.56 0.34 9.76 16 31 H 0.07 1.49 8.04 -51.93 -0.42 1.07 16 32 H 0.09 1.95 7.54 -51.93 -0.39 1.56 16 33 H 0.06 0.91 7.01 -51.93 -0.36 0.55 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.11 1.23 8.14 -51.92 -0.42 0.80 16 36 H 0.11 0.91 6.17 -51.93 -0.32 0.59 16 37 H 0.13 1.01 6.01 -52.48 -0.32 0.69 16 38 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 39 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.39 1.63 9.06 45.56 0.41 2.04 16 41 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 42 H 0.06 1.43 8.07 -51.93 -0.42 1.01 16 43 H 0.07 1.68 7.66 -51.93 -0.40 1.28 16 LS Contribution 358.07 15.07 5.40 5.40 Total: -1.00 -30.40 358.07 -8.85 -39.25 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -4.28 Total: 14.50 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -4.34 Total: -7.86 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: 0.02 Total: -34.63 kcal Atomic # 8 Polarization: -31.22 SS G_CDS: -0.63 Total: -31.85 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.40 -8.85 -39.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592854094.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.772 kcal (2) G-P(sol) polarization free energy of solvation -30.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds