Wall clock time and date at job start Tue Mar 31 2020 11:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00101 * 2 1 4 4 H 1.48507 * 109.47047 * 240.00224 * 3 2 1 5 5 H 1.48500 * 109.47239 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47306 * 120.00090 * 3 2 1 7 7 C 1.37875 * 120.00102 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00153 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00136 * 359.97438 * 7 2 1 10 10 O 1.42908 * 110.63842 * 298.31206 * 9 7 2 11 11 C 1.55160 * 110.72114 * 61.45080 * 9 7 2 12 12 C 1.54905 * 101.57970 * 153.86535 * 11 9 7 13 13 N 1.47427 * 104.83654 * 322.99386 * 12 11 9 14 14 C 1.34775 * 125.64722 * 204.08981 * 13 12 11 15 15 O 1.21286 * 119.99711 * 180.02562 * 14 13 12 16 16 C 1.50697 * 120.00215 * 0.02648 * 14 13 12 17 17 H 1.09002 * 115.54932 * 34.41541 * 16 14 13 18 18 C 1.53000 * 117.50034 * 248.74477 * 16 14 13 19 19 C 1.53002 * 117.49992 * 180.08704 * 16 14 13 20 20 H 1.08999 * 117.49664 * 0.02562 * 19 16 14 21 21 C 1.50695 * 117.50044 * 215.00770 * 19 16 14 22 22 C 1.38295 * 119.96937 * 299.72124 * 21 19 16 23 23 C 1.38242 * 120.11218 * 179.72823 * 22 21 19 24 24 C 1.38162 * 120.05593 * 0.54667 * 23 22 21 25 25 C 1.38716 * 119.94177 * 359.72746 * 24 23 22 26 26 O 1.35899 * 120.05335 * 179.97438 * 25 24 23 27 27 C 1.38122 * 119.97799 * 119.99665 * 21 19 16 28 28 C 1.47024 * 108.70039 * 24.35775 * 13 12 11 29 29 H 0.97002 * 120.00043 * 359.97438 * 1 2 3 30 30 H 0.96703 * 113.99790 * 61.68938 * 10 9 7 31 31 H 1.09000 * 110.99835 * 35.79349 * 11 9 7 32 32 H 1.08990 * 111.00565 * 271.94180 * 11 9 7 33 33 H 1.09003 * 110.37000 * 204.15673 * 12 11 9 34 34 H 1.08997 * 110.36548 * 81.83613 * 12 11 9 35 35 H 1.09008 * 117.49673 * 359.97438 * 18 16 14 36 36 H 1.08999 * 117.49942 * 144.97208 * 18 16 14 37 37 H 1.08007 * 119.94247 * 359.97438 * 22 21 19 38 38 H 1.07999 * 119.97210 * 180.25836 * 23 22 21 39 39 H 1.07999 * 120.03011 * 179.70813 * 24 23 22 40 40 H 0.96701 * 114.00375 * 270.02426 * 26 25 24 41 41 H 1.07997 * 120.02256 * 0.02562 * 27 21 19 42 42 H 1.09000 * 109.88393 * 118.13128 * 28 13 12 43 43 H 1.09001 * 109.88043 * 239.29352 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 8 0.4504 -2.6185 1.1771 11 6 0.3754 -2.6275 -1.2750 12 6 0.2710 -4.1656 -1.4268 13 7 1.5923 -4.6759 -1.0182 14 6 2.1322 -5.8511 -1.3976 15 8 3.2317 -6.1706 -0.9976 16 6 1.3697 -6.7681 -2.3188 17 1 0.7517 -6.2738 -3.0684 18 6 0.8552 -8.0861 -1.7366 19 6 2.0355 -8.0886 -2.7112 20 1 3.0249 -8.2942 -2.3027 21 6 1.7869 -8.6061 -4.1045 22 6 0.4979 -8.8933 -4.5150 23 6 0.2659 -9.3629 -5.7944 24 6 1.3231 -9.5573 -6.6625 25 6 2.6175 -9.2754 -6.2512 26 8 3.6591 -9.4662 -7.1030 27 6 2.8472 -8.7988 -4.9685 28 6 2.2209 -3.6934 -0.1231 29 1 -0.4850 0.8401 0.0004 30 1 -0.2277 -1.9344 1.2627 31 1 0.8727 -2.1827 -2.1370 32 1 -0.6074 -2.1825 -1.1202 33 1 0.0658 -4.4314 -2.4638 34 1 -0.5067 -4.5594 -0.7724 35 1 1.0686 -8.2902 -0.6873 36 1 -0.1015 -8.4587 -2.1029 37 1 -0.3293 -8.7466 -3.8363 38 1 -0.7420 -9.5824 -6.1140 39 1 1.1418 -9.9286 -7.6603 40 1 4.0478 -10.3505 -7.0571 41 1 3.8541 -8.5790 -4.6457 42 1 2.3889 -4.1392 0.8573 43 1 3.1674 -3.3579 -0.5472 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592854094.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:41 Heat of formation + Delta-G solvation = -96.105517 kcal Electronic energy + Delta-G solvation = -25899.252909 eV Core-core repulsion = 22102.332646 eV Total energy + Delta-G solvation = -3796.920263 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.49252 -40.65836 -39.35297 -38.21584 -36.60853 -36.11004 -34.22066 -31.99765 -31.43700 -30.49718 -30.10257 -27.47321 -25.30428 -24.72936 -23.62608 -23.31555 -21.73000 -21.38184 -20.06807 -19.23993 -18.92579 -18.30687 -17.48426 -17.03794 -16.93441 -16.78317 -16.33091 -16.12069 -16.00899 -15.41597 -15.28394 -14.79743 -14.55517 -14.16409 -13.90839 -13.77974 -13.57749 -13.29207 -13.27010 -13.12129 -12.99304 -12.68629 -12.66800 -12.58171 -12.42653 -12.29176 -12.00311 -11.76513 -11.56621 -11.33396 -11.27006 -10.94968 -10.63699 -10.16568 -9.75345 -9.66253 -9.47394 -8.25908 -6.40188 0.24370 0.35384 1.41733 1.43309 1.44126 1.50406 1.94768 2.38579 2.54185 2.98835 3.01240 3.20757 3.45275 3.69259 3.74180 3.85412 3.92215 3.98275 4.01702 4.15903 4.21290 4.25782 4.36082 4.43351 4.55890 4.64215 4.65952 4.72356 4.88204 4.90942 4.99139 5.01892 5.09782 5.15433 5.24111 5.45348 5.46799 5.48748 5.52004 5.62855 5.74816 5.92015 6.06625 6.55385 6.63571 6.85528 7.08569 7.29741 7.39423 8.79855 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021300 B = 0.002638 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.263911 B =10610.744858 C =10873.646573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.039 3.961 3 Si 0.957 3.043 4 H -0.275 1.275 5 H -0.275 1.275 6 H -0.278 1.278 7 C -0.566 4.566 8 H 0.048 0.952 9 C 0.236 3.764 10 O -0.592 6.592 11 C -0.126 4.126 12 C 0.106 3.894 13 N -0.607 5.607 14 C 0.544 3.456 15 O -0.595 6.595 16 C -0.177 4.177 17 H 0.144 0.856 18 C -0.118 4.118 19 C -0.088 4.088 20 H 0.105 0.895 21 C -0.042 4.042 22 C -0.129 4.129 23 C -0.096 4.096 24 C -0.155 4.155 25 C 0.097 3.903 26 O -0.514 6.514 27 C -0.157 4.157 28 C 0.128 3.872 29 H 0.272 0.728 30 H 0.380 0.620 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.145 0.855 37 H 0.151 0.849 38 H 0.158 0.842 39 H 0.145 0.855 40 H 0.409 0.591 41 H 0.118 0.882 42 H 0.043 0.957 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.773 -19.171 -12.330 23.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.163 4.163 3 Si 0.783 3.217 4 H -0.200 1.200 5 H -0.200 1.200 6 H -0.204 1.204 7 C -0.604 4.604 8 H 0.067 0.933 9 C 0.197 3.803 10 O -0.401 6.401 11 C -0.165 4.165 12 C -0.016 4.016 13 N -0.338 5.338 14 C 0.335 3.665 15 O -0.477 6.477 16 C -0.197 4.197 17 H 0.162 0.838 18 C -0.155 4.155 19 C -0.107 4.107 20 H 0.123 0.877 21 C -0.042 4.042 22 C -0.147 4.147 23 C -0.114 4.114 24 C -0.173 4.173 25 C 0.053 3.947 26 O -0.327 6.327 27 C -0.176 4.176 28 C 0.005 3.995 29 H 0.082 0.918 30 H 0.230 0.770 31 H 0.073 0.927 32 H 0.101 0.899 33 H 0.117 0.883 34 H 0.095 0.905 35 H 0.117 0.883 36 H 0.163 0.837 37 H 0.168 0.832 38 H 0.175 0.825 39 H 0.162 0.838 40 H 0.268 0.732 41 H 0.136 0.864 42 H 0.062 0.938 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.054 -19.221 -12.206 23.127 hybrid contribution 0.869 1.414 0.377 1.702 sum -3.185 -17.807 -11.829 21.614 Atomic orbital electron populations 1.69729 1.06409 1.28498 1.49509 1.25553 0.95917 1.01801 0.92979 0.85629 0.78561 0.79010 0.78505 1.20009 1.20031 1.20388 1.21683 0.93325 0.91920 1.53477 0.93330 1.19567 0.87493 0.90221 0.83061 1.86120 1.51863 1.56317 1.45770 1.23087 1.01569 0.92963 0.98870 1.22547 0.83437 0.94628 1.00967 1.48618 1.20008 1.18054 1.47123 1.20032 0.85324 0.80423 0.80748 1.90631 1.22671 1.75150 1.59268 1.22274 1.05076 0.89822 1.02564 0.83843 1.23303 0.99111 0.93934 0.99112 1.20992 0.99062 0.97113 0.93505 0.87719 1.18980 0.93853 0.98528 0.92868 1.21383 0.96139 0.99795 0.97338 1.21372 1.00010 0.97296 0.92716 1.21699 0.91832 1.02205 1.01557 1.18574 0.87965 0.99734 0.88465 1.84781 1.47806 1.39494 1.60605 1.21355 0.99802 1.02897 0.93558 1.21789 0.96302 0.89012 0.92370 0.91807 0.76990 0.92682 0.89909 0.88339 0.90509 0.88322 0.83696 0.83193 0.82478 0.83758 0.73185 0.86381 0.93815 0.92636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.56 10.67 21.45 0.23 -45.33 16 2 C 0.04 2.02 5.28 84.65 0.45 2.46 16 3 Si 0.96 41.49 29.54 68.60 2.03 43.52 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 6 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.57 -30.24 8.22 25.60 0.21 -30.03 16 8 H 0.05 2.66 7.58 -2.91 -0.02 2.64 16 9 C 0.24 11.53 0.85 -10.35 -0.01 11.52 16 10 O -0.59 -29.74 13.07 -148.98 -1.95 -31.69 16 11 C -0.13 -5.33 5.47 31.99 0.17 -5.15 16 12 C 0.11 3.58 6.68 86.85 0.58 4.16 16 13 N -0.61 -23.91 3.33 -811.77 -2.70 -26.61 16 14 C 0.54 20.35 7.63 87.66 0.67 21.02 16 15 O -0.59 -26.73 16.59 -3.05 -0.05 -26.78 16 16 C -0.18 -4.58 5.17 -11.54 -0.06 -4.64 16 17 H 0.14 3.16 7.07 -2.39 -0.02 3.14 16 18 C -0.12 -2.29 9.56 30.62 0.29 -2.00 16 19 C -0.09 -2.07 5.55 -11.52 -0.06 -2.14 16 20 H 0.10 2.93 7.67 -2.39 -0.02 2.91 16 21 C -0.04 -0.87 5.61 -19.88 -0.11 -0.98 16 22 C -0.13 -1.98 9.30 22.28 0.21 -1.77 16 23 C -0.10 -1.28 10.04 22.25 0.22 -1.05 16 24 C -0.15 -2.39 9.99 22.37 0.22 -2.17 16 25 C 0.10 1.88 6.70 22.51 0.15 2.03 16 26 O -0.51 -9.08 13.50 -92.42 -1.25 -10.33 16 27 C -0.16 -3.48 9.68 22.36 0.22 -3.26 16 28 C 0.13 6.01 6.23 86.73 0.54 6.55 16 29 H 0.27 13.09 8.31 -92.71 -0.77 12.32 16 30 H 0.38 18.96 7.46 -74.06 -0.55 18.41 16 31 H 0.05 2.43 8.04 -2.39 -0.02 2.41 16 32 H 0.08 3.58 7.54 -2.39 -0.02 3.56 16 33 H 0.10 2.62 7.01 -2.39 -0.02 2.60 16 34 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 36 H 0.15 1.73 6.17 -2.39 -0.01 1.72 16 37 H 0.15 1.57 6.01 -2.91 -0.02 1.55 16 38 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 39 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 40 H 0.41 3.03 9.06 -74.06 -0.67 2.36 16 41 H 0.12 2.75 8.06 -2.91 -0.02 2.73 16 42 H 0.04 2.15 8.07 -2.39 -0.02 2.13 16 43 H 0.06 2.73 7.66 -2.39 -0.02 2.71 16 Total: -1.00 -67.40 358.07 -0.16 -67.56 By element: Atomic # 1 Polarization: 35.27 SS G_CDS: -0.16 Total: 35.11 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: 3.69 Total: -5.44 kcal Atomic # 7 Polarization: -69.48 SS G_CDS: -2.47 Total: -71.95 kcal Atomic # 8 Polarization: -65.56 SS G_CDS: -3.25 Total: -68.80 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -67.40 -0.16 -67.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592854094.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.544 kcal (2) G-P(sol) polarization free energy of solvation -67.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds