Wall clock time and date at job start Tue Mar 31 2020 11:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48506 * 109.46812 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47258 * 299.99482 * 3 2 1 6 6 H 1.48499 * 109.47344 * 60.00017 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00020 * 163.07870 * 7 2 1 9 9 N 1.36937 * 120.00219 * 343.07619 * 7 2 1 10 10 C 1.46930 * 120.63259 * 331.83653 * 9 7 2 11 11 C 1.53183 * 108.89468 * 233.51494 * 10 9 7 12 12 C 1.53076 * 109.29478 * 305.57480 * 11 10 9 13 13 N 1.46906 * 109.45030 * 181.24098 * 12 11 10 14 14 C 1.46901 * 110.99389 * 84.79156 * 13 12 11 15 15 C 1.50708 * 109.46638 * 179.97438 * 14 13 12 16 16 C 1.32099 * 124.29710 * 89.72825 * 15 14 13 17 17 C 1.44893 * 114.82920 * 179.80495 * 16 15 14 18 18 C 1.41415 * 130.45916 * 180.20367 * 17 16 15 19 19 C 1.36119 * 119.28169 * 180.31070 * 18 17 16 20 20 N 1.32308 * 121.46311 * 359.95803 * 19 18 17 21 21 C 1.31476 * 122.06546 * 0.02562 * 20 19 18 22 22 C 1.39534 * 120.60984 * 359.97438 * 21 20 19 23 23 S 1.75357 * 124.30215 * 270.02330 * 15 14 13 24 24 C 1.53033 * 109.65646 * 61.15632 * 12 11 10 25 25 C 1.46925 * 120.63413 * 151.81378 * 9 7 2 26 26 H 0.96995 * 120.00379 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.58138 * 353.37071 * 10 9 7 28 28 H 1.08998 * 109.58912 * 113.65314 * 10 9 7 29 29 H 1.09005 * 109.50135 * 65.38839 * 11 10 9 30 30 H 1.09004 * 109.49749 * 185.48051 * 11 10 9 31 31 H 1.08990 * 109.33376 * 301.13470 * 12 11 10 32 32 H 1.00900 * 110.99917 * 208.73907 * 13 12 11 33 33 H 1.08994 * 109.47662 * 299.99237 * 14 13 12 34 34 H 1.09000 * 109.47510 * 60.00123 * 14 13 12 35 35 H 1.08002 * 122.58145 * 359.97438 * 16 15 14 36 36 H 1.08002 * 120.35872 * 0.31528 * 18 17 16 37 37 H 1.08006 * 119.27015 * 179.97438 * 19 18 17 38 38 H 1.07995 * 119.69220 * 180.02562 * 21 20 19 39 39 H 1.09003 * 109.49897 * 178.74799 * 24 12 11 40 40 H 1.09004 * 109.50093 * 58.65268 * 24 12 11 41 41 H 1.09001 * 109.58688 * 246.20238 * 25 9 7 42 42 H 1.08996 * 109.58570 * 6.47946 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2224 -0.2717 9 7 1.3702 -2.3622 0.3463 10 6 0.2263 -2.3400 1.2681 11 6 0.4942 -3.3197 2.4148 12 6 0.8122 -4.7007 1.8363 13 7 1.0405 -5.6501 2.9339 14 6 -0.2284 -6.2095 3.4185 15 6 0.0454 -7.1771 4.5410 16 6 0.1027 -6.8401 5.8170 17 6 0.3750 -7.9365 6.7242 18 6 0.5015 -7.9523 8.1326 19 6 0.7700 -9.1281 8.7638 20 7 0.9145 -10.2569 8.0889 21 6 0.8080 -10.3057 6.7793 22 6 0.5342 -9.1510 6.0453 23 16 0.3358 -8.8921 4.3185 24 6 2.0675 -4.6173 0.9650 25 6 1.8138 -3.6528 -0.1979 26 1 -0.4850 0.8400 -0.0004 27 1 0.0995 -1.3342 1.6688 28 1 -0.6774 -2.6380 0.7364 29 1 1.3429 -2.9691 3.0021 30 1 -0.3879 -3.3839 3.0520 31 1 -0.0281 -5.0406 1.2310 32 1 1.6745 -6.3828 2.6521 33 1 -0.8661 -5.4032 3.7809 34 1 -0.7303 -6.7313 2.6037 35 1 -0.0450 -5.8259 6.1578 36 1 0.3862 -7.0414 8.7013 37 1 0.8671 -9.1399 9.8394 38 1 0.9328 -11.2482 6.2672 39 1 2.3043 -5.6062 0.5724 40 1 2.9025 -4.2536 1.5638 41 1 1.0401 -4.0605 -0.8485 42 1 2.7331 -3.5130 -0.7666 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594921625.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:47 Heat of formation + Delta-G solvation = 75.263066 kcal Electronic energy + Delta-G solvation = -23050.318361 eV Core-core repulsion = 19735.874820 eV Total energy + Delta-G solvation = -3314.443541 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.54929 -38.30818 -36.74811 -34.95290 -32.55891 -31.71749 -30.93189 -29.96761 -29.07703 -26.16249 -24.47764 -24.23981 -22.83544 -22.20971 -21.28729 -20.71330 -19.14723 -18.13121 -16.81083 -16.72520 -16.61382 -15.38571 -15.15634 -15.01169 -14.72800 -14.46026 -14.35170 -14.11114 -13.82997 -13.49921 -13.17546 -12.93762 -12.58583 -12.39171 -12.16452 -12.00180 -11.84123 -11.39747 -11.07851 -11.02117 -10.85997 -10.74063 -10.25422 -10.22343 -10.19896 -9.99017 -9.93488 -9.62070 -9.57747 -9.20813 -8.50841 -8.29560 -8.12184 -6.68502 -5.79818 -3.22172 0.28443 0.68379 1.11967 1.61858 1.99609 3.36683 3.43812 3.44734 3.47061 4.02957 4.12214 4.37555 4.41772 4.49153 4.60847 4.79473 5.05294 5.08905 5.26673 5.28978 5.34201 5.40062 5.41860 5.56061 5.64152 5.66838 5.83735 5.84716 6.05958 6.08754 6.23146 6.29686 6.34200 6.51204 6.60013 6.71363 6.74162 6.95809 7.21761 7.35982 7.46789 7.57995 7.66420 7.79664 8.44653 9.20756 9.84029 10.40638 11.28904 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.029055 B = 0.002368 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.455635 B =11821.963185 C =12290.273612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.250 4.250 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.170 3.830 11 C -0.125 4.125 12 C 0.096 3.904 13 N -0.681 5.681 14 C 0.123 3.877 15 C -0.130 4.130 16 C -0.114 4.114 17 C -0.031 4.031 18 C -0.130 4.130 19 C 0.080 3.920 20 N -0.476 5.476 21 C 0.156 3.844 22 C -0.205 4.205 23 S 0.112 5.888 24 C -0.133 4.133 25 C 0.148 3.852 26 H 0.253 0.747 27 H 0.088 0.912 28 H 0.015 0.985 29 H 0.061 0.939 30 H 0.045 0.955 31 H 0.038 0.962 32 H 0.336 0.664 33 H 0.097 0.903 34 H 0.043 0.957 35 H 0.153 0.847 36 H 0.140 0.860 37 H 0.159 0.841 38 H 0.160 0.840 39 H 0.047 0.953 40 H 0.067 0.933 41 H 0.016 0.984 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.092 -18.810 12.943 22.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.202 1.202 5 H -0.218 1.218 6 H -0.215 1.215 7 C -0.380 4.380 8 H 0.083 0.917 9 N -0.314 5.314 10 C 0.044 3.956 11 C -0.164 4.164 12 C -0.012 4.012 13 N -0.312 5.312 14 C -0.008 4.008 15 C -0.247 4.247 16 C -0.145 4.145 17 C -0.047 4.047 18 C -0.151 4.151 19 C -0.071 4.071 20 N -0.186 5.186 21 C -0.013 4.013 22 C -0.323 4.323 23 S 0.375 5.625 24 C -0.172 4.172 25 C 0.021 3.979 26 H 0.063 0.937 27 H 0.107 0.893 28 H 0.033 0.967 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.154 0.846 33 H 0.115 0.885 34 H 0.061 0.939 35 H 0.170 0.830 36 H 0.158 0.842 37 H 0.176 0.824 38 H 0.177 0.823 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.033 0.967 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.944 -19.789 12.638 23.499 hybrid contribution -0.095 1.938 0.097 1.942 sum -1.039 -17.851 12.735 21.953 Atomic orbital electron populations 1.70039 1.05272 1.25379 1.54125 1.25049 0.95298 0.98438 1.00937 0.86231 0.79399 0.83942 0.77259 1.20238 1.21753 1.21548 1.19226 0.92558 0.84800 1.41431 0.91660 1.44065 1.35890 1.01497 1.49990 1.20798 0.88501 0.98322 0.88007 1.22216 1.00253 0.94307 0.99668 1.21542 0.97250 0.92960 0.89482 1.60709 1.11265 1.19797 1.39479 1.20559 0.93233 0.94467 0.92521 1.24180 1.04814 0.97111 0.98595 1.20822 1.03291 0.99260 0.91082 1.19499 0.98784 0.92042 0.94364 1.21710 1.00648 1.00316 0.92444 1.22168 0.96760 0.87650 1.00524 1.67729 1.13516 1.29333 1.08002 1.22263 0.93923 0.95873 0.89251 1.23828 1.10310 0.99051 0.99096 1.84158 1.74576 1.03012 1.00785 1.22209 0.97356 0.99034 0.98635 1.20854 0.97696 0.86900 0.92480 0.93705 0.89345 0.96693 0.92011 0.93672 0.94408 0.84567 0.88525 0.93867 0.82962 0.84213 0.82399 0.82273 0.93440 0.91390 0.96657 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.09 11.20 55.49 0.62 -25.47 16 2 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 3 Si 0.90 21.62 29.59 -169.99 -5.03 16.59 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.25 -6.84 9.58 -15.06 -0.14 -6.99 16 8 H 0.07 1.76 7.89 -52.49 -0.41 1.34 16 9 N -0.59 -14.68 3.00 -172.33 -0.52 -15.19 16 10 C 0.17 4.00 5.30 -3.71 -0.02 3.98 16 11 C -0.12 -2.34 5.60 -26.60 -0.15 -2.49 16 12 C 0.10 1.55 2.45 -67.65 -0.17 1.39 16 13 N -0.68 -9.17 6.30 -107.93 -0.68 -9.85 16 14 C 0.12 1.43 5.91 -4.97 -0.03 1.40 16 15 C -0.13 -1.41 5.90 -36.23 -0.21 -1.62 16 16 C -0.11 -1.23 10.22 -38.87 -0.40 -1.62 16 17 C -0.03 -0.33 6.10 -105.38 -0.64 -0.97 16 18 C -0.13 -1.16 10.13 -39.13 -0.40 -1.56 16 19 C 0.08 0.71 11.07 -18.11 -0.20 0.51 16 20 N -0.48 -5.02 10.34 -13.41 -0.14 -5.16 16 21 C 0.16 1.54 11.24 -17.22 -0.19 1.34 16 22 C -0.21 -2.16 6.52 -38.42 -0.25 -2.41 16 23 S 0.11 1.10 23.19 -107.50 -2.49 -1.40 16 24 C -0.13 -2.23 5.36 -26.62 -0.14 -2.37 16 25 C 0.15 3.04 6.52 -3.71 -0.02 3.01 16 26 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 27 H 0.09 2.34 6.06 -51.93 -0.31 2.03 16 28 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.04 0.77 7.42 -51.93 -0.39 0.39 16 31 H 0.04 0.63 7.80 -51.93 -0.40 0.22 16 32 H 0.34 4.22 8.32 -39.29 -0.33 3.89 16 33 H 0.10 1.14 7.40 -51.93 -0.38 0.75 16 34 H 0.04 0.48 8.06 -51.93 -0.42 0.06 16 35 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 36 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.16 0.94 8.06 -52.48 -0.42 0.51 16 38 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.05 0.67 8.10 -51.93 -0.42 0.25 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 41 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 LS Contribution 353.84 15.07 5.33 5.33 Total: -1.00 -30.31 353.84 -11.96 -42.27 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -6.00 Total: 1.34 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -3.06 Total: -8.46 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: -0.71 Total: -55.68 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Atomic # 16 Polarization: 1.10 SS G_CDS: -2.49 Total: -1.40 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.31 -11.96 -42.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594921625.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.533 kcal (2) G-P(sol) polarization free energy of solvation -30.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds