Wall clock time and date at job start Tue Mar 31 2020 11:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48506 * 109.46812 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47258 * 299.99482 * 3 2 1 6 6 H 1.48499 * 109.47344 * 60.00017 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00020 * 163.07870 * 7 2 1 9 9 N 1.36937 * 120.00219 * 343.07619 * 7 2 1 10 10 C 1.46930 * 120.63259 * 331.83653 * 9 7 2 11 11 C 1.53183 * 108.89468 * 233.51494 * 10 9 7 12 12 C 1.53076 * 109.29478 * 305.57480 * 11 10 9 13 13 N 1.46906 * 109.45030 * 181.24098 * 12 11 10 14 14 C 1.46901 * 110.99389 * 84.79156 * 13 12 11 15 15 C 1.50708 * 109.46638 * 179.97438 * 14 13 12 16 16 C 1.32099 * 124.29710 * 89.72825 * 15 14 13 17 17 C 1.44893 * 114.82920 * 179.80495 * 16 15 14 18 18 C 1.41415 * 130.45916 * 180.20367 * 17 16 15 19 19 C 1.36119 * 119.28169 * 180.31070 * 18 17 16 20 20 N 1.32308 * 121.46311 * 359.95803 * 19 18 17 21 21 C 1.31476 * 122.06546 * 0.02562 * 20 19 18 22 22 C 1.39534 * 120.60984 * 359.97438 * 21 20 19 23 23 S 1.75357 * 124.30215 * 270.02330 * 15 14 13 24 24 C 1.53033 * 109.65646 * 61.15632 * 12 11 10 25 25 C 1.46925 * 120.63413 * 151.81378 * 9 7 2 26 26 H 0.96995 * 120.00379 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.58138 * 353.37071 * 10 9 7 28 28 H 1.08998 * 109.58912 * 113.65314 * 10 9 7 29 29 H 1.09005 * 109.50135 * 65.38839 * 11 10 9 30 30 H 1.09004 * 109.49749 * 185.48051 * 11 10 9 31 31 H 1.08990 * 109.33376 * 301.13470 * 12 11 10 32 32 H 1.00900 * 110.99917 * 208.73907 * 13 12 11 33 33 H 1.08994 * 109.47662 * 299.99237 * 14 13 12 34 34 H 1.09000 * 109.47510 * 60.00123 * 14 13 12 35 35 H 1.08002 * 122.58145 * 359.97438 * 16 15 14 36 36 H 1.08002 * 120.35872 * 0.31528 * 18 17 16 37 37 H 1.08006 * 119.27015 * 179.97438 * 19 18 17 38 38 H 1.07995 * 119.69220 * 180.02562 * 21 20 19 39 39 H 1.09003 * 109.49897 * 178.74799 * 24 12 11 40 40 H 1.09004 * 109.50093 * 58.65268 * 24 12 11 41 41 H 1.09001 * 109.58688 * 246.20238 * 25 9 7 42 42 H 1.08996 * 109.58570 * 6.47946 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2224 -0.2717 9 7 1.3702 -2.3622 0.3463 10 6 0.2263 -2.3400 1.2681 11 6 0.4942 -3.3197 2.4148 12 6 0.8122 -4.7007 1.8363 13 7 1.0405 -5.6501 2.9339 14 6 -0.2284 -6.2095 3.4185 15 6 0.0454 -7.1771 4.5410 16 6 0.1027 -6.8401 5.8170 17 6 0.3750 -7.9365 6.7242 18 6 0.5015 -7.9523 8.1326 19 6 0.7700 -9.1281 8.7638 20 7 0.9145 -10.2569 8.0889 21 6 0.8080 -10.3057 6.7793 22 6 0.5342 -9.1510 6.0453 23 16 0.3358 -8.8921 4.3185 24 6 2.0675 -4.6173 0.9650 25 6 1.8138 -3.6528 -0.1979 26 1 -0.4850 0.8400 -0.0004 27 1 0.0995 -1.3342 1.6688 28 1 -0.6774 -2.6380 0.7364 29 1 1.3429 -2.9691 3.0021 30 1 -0.3879 -3.3839 3.0520 31 1 -0.0281 -5.0406 1.2310 32 1 1.6745 -6.3828 2.6521 33 1 -0.8661 -5.4032 3.7809 34 1 -0.7303 -6.7313 2.6037 35 1 -0.0450 -5.8259 6.1578 36 1 0.3862 -7.0414 8.7013 37 1 0.8671 -9.1399 9.8394 38 1 0.9328 -11.2482 6.2672 39 1 2.3043 -5.6062 0.5724 40 1 2.9025 -4.2536 1.5638 41 1 1.0401 -4.0605 -0.8485 42 1 2.7331 -3.5130 -0.7666 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594921625.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:46 Heat of formation + Delta-G solvation = 57.416945 kcal Electronic energy + Delta-G solvation = -23051.092227 eV Core-core repulsion = 19735.874820 eV Total energy + Delta-G solvation = -3315.217407 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.25516 -39.71220 -37.78693 -36.27232 -34.16429 -32.45056 -32.22574 -31.60061 -30.43732 -27.43324 -25.97196 -25.07883 -23.97716 -23.56198 -22.79685 -21.54433 -20.73018 -18.94302 -18.63862 -17.48610 -17.43847 -16.89601 -16.28568 -16.10166 -15.89243 -15.60535 -15.31088 -15.28968 -15.04490 -14.89640 -14.76024 -14.18426 -13.85057 -13.61938 -13.39584 -13.05994 -13.00612 -12.83356 -12.67087 -12.59846 -12.40227 -12.00506 -11.95857 -11.77695 -11.74211 -11.28899 -11.16722 -10.90079 -10.70429 -10.55580 -10.03618 -9.42240 -8.84063 -8.68710 -7.87890 -5.32945 -0.47931 -0.00683 0.37043 0.85400 1.21346 1.45619 1.47829 1.58195 2.51158 2.73252 3.10245 3.28260 3.41596 3.51633 3.70062 3.72011 3.91162 3.95169 3.99024 4.17200 4.24004 4.40962 4.42488 4.55483 4.59432 4.64003 4.67891 4.72647 4.86783 4.92973 4.96686 5.04493 5.06164 5.11941 5.21674 5.29425 5.40222 5.53501 5.58085 5.65318 5.76333 6.01973 6.38023 6.42558 6.88738 7.15255 7.86653 8.37806 9.18818 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.029055 B = 0.002368 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.455635 B =11821.963185 C =12290.273612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.052 4.052 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.292 1.292 6 H -0.290 1.290 7 C -0.260 4.260 8 H 0.066 0.934 9 N -0.611 5.611 10 C 0.177 3.823 11 C -0.110 4.110 12 C 0.108 3.892 13 N -0.680 5.680 14 C 0.126 3.874 15 C -0.142 4.142 16 C -0.116 4.116 17 C -0.051 4.051 18 C -0.131 4.131 19 C 0.074 3.926 20 N -0.495 5.495 21 C 0.148 3.852 22 C -0.219 4.219 23 S 0.130 5.870 24 C -0.120 4.120 25 C 0.142 3.858 26 H 0.250 0.750 27 H 0.052 0.948 28 H -0.005 1.005 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.039 0.961 32 H 0.346 0.654 33 H 0.094 0.906 34 H 0.052 0.948 35 H 0.159 0.841 36 H 0.163 0.837 37 H 0.186 0.814 38 H 0.179 0.821 39 H 0.082 0.918 40 H 0.059 0.941 41 H 0.015 0.985 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.313 -20.268 14.013 24.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.794 3.206 4 H -0.191 1.191 5 H -0.219 1.219 6 H -0.217 1.217 7 C -0.391 4.391 8 H 0.083 0.917 9 N -0.335 5.335 10 C 0.051 3.949 11 C -0.149 4.149 12 C -0.002 4.002 13 N -0.312 5.312 14 C -0.004 4.004 15 C -0.259 4.259 16 C -0.147 4.147 17 C -0.066 4.066 18 C -0.152 4.152 19 C -0.076 4.076 20 N -0.205 5.205 21 C -0.021 4.021 22 C -0.337 4.337 23 S 0.393 5.607 24 C -0.159 4.159 25 C 0.016 3.984 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.013 0.987 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.165 0.835 33 H 0.112 0.888 34 H 0.070 0.930 35 H 0.176 0.824 36 H 0.181 0.819 37 H 0.203 0.797 38 H 0.196 0.804 39 H 0.101 0.899 40 H 0.077 0.923 41 H 0.033 0.967 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.145 -21.291 13.710 25.324 hybrid contribution -0.346 2.314 -0.202 2.348 sum -0.491 -18.977 13.508 23.299 Atomic orbital electron populations 1.70185 1.06637 1.25753 1.55595 1.25794 0.96067 1.01491 1.01369 0.85235 0.78655 0.79949 0.76787 1.19132 1.21880 1.21672 1.19537 0.92798 0.86099 1.40637 0.91673 1.44341 1.35981 1.02407 1.50771 1.20588 0.87681 0.97637 0.89008 1.21956 1.00412 0.94854 0.97727 1.21251 0.96921 0.92055 0.89928 1.60528 1.12509 1.20100 1.38051 1.20520 0.92238 0.94660 0.93003 1.24110 1.05716 0.97689 0.98382 1.20970 1.02826 0.99679 0.91204 1.19740 0.99502 0.92093 0.95311 1.22010 0.99834 1.01369 0.91982 1.22661 0.95917 0.87206 1.01850 1.67774 1.14029 1.30267 1.08417 1.22615 0.93620 0.96551 0.89285 1.24014 1.10691 0.99407 0.99567 1.84018 1.74342 1.01999 1.00344 1.22029 0.97227 0.99592 0.97077 1.21027 0.97416 0.85910 0.94019 0.94126 0.92972 0.98675 0.93317 0.92033 0.94335 0.83473 0.88805 0.92988 0.82401 0.81930 0.79721 0.80370 0.89911 0.92269 0.96737 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.54 11.20 21.65 0.24 -55.30 16 2 C -0.05 -2.92 4.92 84.86 0.42 -2.50 16 3 Si 0.97 45.07 29.59 68.60 2.03 47.10 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 5 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 6 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 7 C -0.26 -14.40 9.58 84.03 0.81 -13.59 16 8 H 0.07 3.52 7.89 -2.91 -0.02 3.50 16 9 N -0.61 -30.68 3.00 -699.11 -2.09 -32.77 16 10 C 0.18 8.52 5.30 86.36 0.46 8.98 16 11 C -0.11 -4.08 5.60 30.68 0.17 -3.91 16 12 C 0.11 3.29 2.45 44.95 0.11 3.40 16 13 N -0.68 -16.73 6.30 -495.38 -3.12 -19.85 16 14 C 0.13 2.67 5.91 85.56 0.51 3.18 16 15 C -0.14 -2.82 5.90 24.72 0.15 -2.67 16 16 C -0.12 -2.31 10.22 23.01 0.24 -2.07 16 17 C -0.05 -1.00 6.10 -20.35 -0.12 -1.12 16 18 C -0.13 -2.07 10.13 22.56 0.23 -1.85 16 19 C 0.07 1.16 11.07 84.13 0.93 2.09 16 20 N -0.50 -9.64 10.34 -196.35 -2.03 -11.67 16 21 C 0.15 2.69 11.24 85.06 0.96 3.65 16 22 C -0.22 -4.28 6.52 23.02 0.15 -4.13 16 23 S 0.13 2.31 23.19 -56.49 -1.31 1.00 16 24 C -0.12 -3.78 5.36 30.67 0.16 -3.62 16 25 C 0.14 5.75 6.52 86.36 0.56 6.31 16 26 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 27 H 0.05 2.87 6.06 -2.38 -0.01 2.86 16 28 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 29 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 30 H 0.06 2.06 7.42 -2.38 -0.02 2.04 16 31 H 0.04 1.20 7.80 -2.39 -0.02 1.18 16 32 H 0.35 7.65 8.32 -89.69 -0.75 6.90 16 33 H 0.09 2.04 7.40 -2.39 -0.02 2.03 16 34 H 0.05 1.03 8.06 -2.39 -0.02 1.01 16 35 H 0.16 2.83 8.06 -2.91 -0.02 2.80 16 36 H 0.16 1.70 8.06 -2.91 -0.02 1.67 16 37 H 0.19 1.71 8.06 -2.91 -0.02 1.68 16 38 H 0.18 2.29 8.06 -2.91 -0.02 2.27 16 39 H 0.08 2.06 8.10 -2.39 -0.02 2.04 16 40 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 41 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.06 2.22 7.93 -2.39 -0.02 2.20 16 Total: -1.00 -65.93 353.84 -0.28 -66.21 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 0.28 Total: 13.13 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: 5.72 Total: -7.86 kcal Atomic # 7 Polarization: -112.59 SS G_CDS: -7.00 Total: -119.59 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -1.31 Total: 1.00 kcal Total: -65.93 -0.28 -66.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594921625.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.629 kcal (2) G-P(sol) polarization free energy of solvation -65.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds