Wall clock time and date at job start Tue Mar 31 2020 12:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 110.05399 * 2 1 4 4 O 1.20823 * 120.00231 * 238.57966 * 3 2 1 5 5 O 1.34233 * 120.00428 * 58.58212 * 3 2 1 6 6 C 1.54268 * 110.03380 * 121.41374 * 2 1 3 7 7 C 1.54888 * 104.19474 * 95.67745 * 6 2 1 8 8 C 1.54887 * 102.74759 * 37.94206 * 7 6 2 9 9 C 1.53873 * 110.03652 * 238.58359 * 2 1 3 10 10 H 1.09002 * 110.07298 * 121.40613 * 9 2 1 11 11 N 1.46504 * 110.02936 * 359.97438 * 9 2 1 12 12 C 1.34780 * 119.99758 * 156.38200 * 11 9 2 13 13 O 1.21548 * 119.99870 * 359.97438 * 12 11 9 14 14 C 1.47883 * 119.99680 * 179.97438 * 12 11 9 15 15 C 1.39921 * 120.02824 * 359.97438 * 14 12 11 16 16 C 1.38327 * 120.35779 * 180.02562 * 15 14 12 17 17 C 1.37740 * 120.41658 * 0.02562 * 16 15 14 18 18 C 1.40749 * 120.04067 * 359.97438 * 17 16 15 19 19 C 1.41435 * 120.18154 * 179.97438 * 18 17 16 20 20 H 1.07997 * 119.99911 * 155.02068 * 19 18 17 21 21 C 1.39932 * 119.99886 * 334.73695 * 19 18 17 22 22 N 1.30831 * 120.00358 * 342.33933 * 21 19 18 23 23 Si 1.86805 * 120.00209 * 162.33705 * 21 19 18 24 24 H 1.48503 * 109.46737 * 94.51978 * 23 21 19 25 25 H 1.48496 * 109.47139 * 214.51710 * 23 21 19 26 26 H 1.48501 * 109.47072 * 334.52222 * 23 21 19 27 27 C 1.39000 * 120.02435 * 180.25754 * 14 12 11 28 28 H 1.09004 * 109.47170 * 181.41430 * 1 2 3 29 29 H 1.09000 * 109.47221 * 301.41859 * 1 2 3 30 30 H 1.09004 * 109.47051 * 61.41814 * 1 2 3 31 31 H 0.96691 * 117.00519 * 179.97438 * 5 3 2 32 32 H 1.09005 * 110.48368 * 336.99767 * 6 2 1 33 33 H 1.08998 * 110.59829 * 214.41275 * 6 2 1 34 34 H 1.08998 * 110.75493 * 279.63150 * 7 6 2 35 35 H 1.08994 * 110.75614 * 156.25699 * 7 6 2 36 36 H 1.09004 * 110.48875 * 203.37769 * 8 7 6 37 37 H 1.09007 * 110.48516 * 80.74091 * 8 7 6 38 38 H 0.97001 * 119.99973 * 336.37419 * 11 9 2 39 39 H 1.08007 * 119.81884 * 0.02562 * 15 14 12 40 40 H 1.08011 * 119.79210 * 179.97438 * 16 15 14 41 41 H 1.08007 * 119.98510 * 179.97438 * 17 16 15 42 42 H 0.97003 * 120.00587 * 179.97438 * 22 21 19 43 43 H 1.07992 * 120.19975 * 359.97438 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0467 1.4156 0.0000 4 8 2.7663 1.7961 -0.8929 5 8 1.7077 2.2540 0.9920 6 6 2.0584 -0.7554 1.2369 7 6 2.3281 -2.1901 0.7192 8 6 2.8875 -1.9406 -0.7034 9 6 2.0571 -0.7535 -1.2337 10 1 2.6865 -0.0957 -1.8331 11 7 0.9359 -1.2456 -2.0381 12 6 1.1084 -1.4994 -3.3505 13 8 2.1941 -1.3195 -3.8667 14 6 -0.0232 -1.9966 -4.1624 15 6 -1.2730 -2.2043 -3.5686 16 6 -2.3360 -2.6697 -4.3214 17 6 -2.1768 -2.9346 -5.6637 18 6 -0.9271 -2.7317 -6.2786 19 6 -0.7602 -3.0033 -7.6566 20 1 0.0137 -2.4992 -8.2164 21 6 -1.5940 -3.9294 -8.2932 22 7 -2.2810 -4.7873 -7.5834 23 14 -1.7262 -3.9409 -10.1565 24 1 -0.7731 -4.9338 -10.7142 25 1 -3.1099 -4.3065 -10.5523 26 1 -1.4004 -2.5915 -10.6842 27 6 0.1555 -2.2636 -5.5148 28 1 -0.3634 -1.0274 0.0254 29 1 -0.3634 0.5357 0.8770 30 1 -0.3633 0.4917 -0.9025 31 1 2.0639 3.1519 0.9490 32 1 1.3060 -0.7695 2.0255 33 1 2.9806 -0.3008 1.5988 34 1 1.4032 -2.7651 0.6752 35 1 3.0676 -2.6930 1.3423 36 1 2.7402 -2.8196 -1.3309 37 1 3.9441 -1.6766 -0.6570 38 1 0.0695 -1.3888 -1.6262 39 1 -1.4084 -2.0001 -2.5167 40 1 -3.2967 -2.8272 -3.8536 41 1 -3.0115 -3.2982 -6.2448 42 1 -2.8592 -5.4290 -8.0247 43 1 1.1194 -2.1087 -5.9763 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595247606.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:03 Heat of formation + Delta-G solvation = -116.181914 kcal Electronic energy + Delta-G solvation = -26482.247102 eV Core-core repulsion = 22684.456262 eV Total energy + Delta-G solvation = -3797.790840 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.23207 -39.46492 -38.01701 -36.84883 -36.31206 -33.81204 -33.27085 -31.77439 -30.02076 -29.78344 -27.64047 -26.23017 -25.31079 -23.73521 -22.47763 -21.02507 -20.71818 -19.82366 -19.24461 -18.09686 -18.00422 -16.97012 -16.32001 -15.86628 -15.65147 -15.17903 -14.99832 -14.68177 -14.32751 -14.05480 -13.69157 -13.46415 -13.36037 -13.06109 -12.90396 -12.69796 -12.41623 -12.11037 -11.83609 -11.74625 -11.62479 -11.43244 -11.18073 -11.15529 -11.09611 -11.04460 -10.87871 -10.71076 -10.54324 -10.42949 -10.17175 -9.56271 -9.22771 -9.12648 -8.74161 -7.63926 -7.54148 -6.83640 -4.43498 1.98880 2.18147 2.68759 2.73493 3.05612 3.08455 3.14691 3.61724 3.82978 3.91001 4.03448 4.31168 4.52107 4.60163 4.89849 4.97363 5.08435 5.14001 5.33393 5.44152 5.48724 5.53448 5.56338 5.59052 5.68129 5.76112 5.86024 5.97928 6.08171 6.12672 6.16778 6.21807 6.29367 6.81257 6.87981 6.91994 7.00051 7.14558 7.34692 7.62577 7.66437 7.78805 7.93576 7.95396 8.18511 8.51633 8.77552 8.82445 8.86791 10.12105 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025639 B = 0.002853 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.803012 B = 9811.881566 C = 9931.335740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.062 4.062 3 C 0.489 3.511 4 O -0.503 6.503 5 O -0.513 6.513 6 C -0.107 4.107 7 C -0.124 4.124 8 C -0.134 4.134 9 C 0.148 3.852 10 H 0.113 0.887 11 N -0.730 5.730 12 C 0.564 3.436 13 O -0.547 6.547 14 C -0.117 4.117 15 C -0.210 4.210 16 C -0.111 4.111 17 C -0.143 4.143 18 C 0.100 3.900 19 C -0.460 4.460 20 H 0.081 0.919 21 C 0.076 3.924 22 N -0.794 5.794 23 Si 0.909 3.091 24 H -0.270 1.270 25 H -0.275 1.275 26 H -0.259 1.259 27 C -0.154 4.154 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.409 0.591 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.400 0.600 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.121 0.879 42 H 0.282 0.718 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.498 6.441 17.660 18.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.064 4.064 3 C 0.330 3.670 4 O -0.390 6.390 5 O -0.325 6.325 6 C -0.145 4.145 7 C -0.162 4.162 8 C -0.172 4.172 9 C 0.042 3.958 10 H 0.131 0.869 11 N -0.387 5.387 12 C 0.355 3.645 13 O -0.425 6.425 14 C -0.120 4.120 15 C -0.231 4.231 16 C -0.129 4.129 17 C -0.163 4.163 18 C 0.097 3.903 19 C -0.489 4.489 20 H 0.099 0.901 21 C -0.142 4.142 22 N -0.419 5.419 23 Si 0.733 3.267 24 H -0.195 1.195 25 H -0.200 1.200 26 H -0.183 1.183 27 C -0.174 4.174 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.268 0.732 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.240 0.760 39 H 0.106 0.894 40 H 0.112 0.888 41 H 0.139 0.861 42 H 0.092 0.908 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.156 6.075 17.018 18.343 hybrid contribution -0.312 0.429 -0.601 0.802 sum 2.844 6.504 16.417 17.886 Atomic orbital electron populations 1.21909 0.91130 1.03583 1.03780 1.21345 0.98444 0.88120 0.98510 1.23224 0.77304 0.88134 0.78314 1.90752 1.34941 1.77071 1.36245 1.84515 1.71353 1.27300 1.49323 1.22437 1.01539 0.95462 0.95015 1.22547 1.01599 0.95666 0.96365 1.22810 0.99499 0.98779 0.96160 1.21490 0.88792 0.95260 0.90231 0.86891 1.46279 1.13706 1.69107 1.09577 1.18890 0.88649 0.76001 0.80986 1.90688 1.27270 1.52566 1.71956 1.19316 0.92396 1.05707 0.94630 1.20359 0.93586 1.11639 0.97466 1.20598 0.96814 1.00549 0.94955 1.21478 0.97885 1.03203 0.93736 1.17585 0.90284 0.89241 0.93149 1.19604 1.14909 1.20398 0.93985 0.90106 1.25904 0.93653 0.93570 1.01050 1.69805 1.21227 1.12709 1.38195 0.86282 0.78364 0.79866 0.82170 1.19495 1.20014 1.18318 1.21231 0.98360 1.06112 0.91694 0.90409 0.90561 0.90992 0.73238 0.89828 0.90912 0.90788 0.90802 0.90161 0.90658 0.76037 0.89365 0.88814 0.86141 0.90758 0.87423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 6.95 37.16 0.26 -1.09 16 2 C -0.06 -0.66 0.88 -154.54 -0.14 -0.80 16 3 C 0.49 5.67 6.81 36.01 0.25 5.92 16 4 O -0.50 -7.77 15.97 -18.75 -0.30 -8.07 16 5 O -0.51 -4.17 13.28 -39.27 -0.52 -4.70 16 6 C -0.11 -0.87 5.88 -25.07 -0.15 -1.02 16 7 C -0.12 -1.10 6.91 -24.74 -0.17 -1.27 16 8 C -0.13 -1.65 6.53 -25.08 -0.16 -1.81 16 9 C 0.15 2.09 2.80 -66.81 -0.19 1.90 16 10 H 0.11 1.99 5.86 -51.93 -0.30 1.69 16 11 N -0.73 -11.55 4.45 -53.65 -0.24 -11.79 16 12 C 0.56 11.80 7.76 -12.31 -0.10 11.70 16 13 O -0.55 -13.13 16.01 5.32 0.09 -13.05 16 14 C -0.12 -2.66 5.87 -105.04 -0.62 -3.28 16 15 C -0.21 -4.32 9.55 -38.92 -0.37 -4.69 16 16 C -0.11 -2.41 10.01 -39.73 -0.40 -2.81 16 17 C -0.14 -3.57 8.68 -38.82 -0.34 -3.91 16 18 C 0.10 2.63 5.56 -106.87 -0.59 2.04 16 19 C -0.46 -12.14 9.05 -37.73 -0.34 -12.48 16 20 H 0.08 2.08 7.91 -52.49 -0.42 1.66 16 21 C 0.08 1.88 5.13 -17.34 -0.09 1.79 16 22 N -0.79 -20.02 10.99 55.55 0.61 -19.41 16 23 Si 0.91 18.48 29.60 -169.99 -5.03 13.44 16 24 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 25 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 26 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 27 C -0.15 -3.91 9.34 -38.44 -0.36 -4.27 16 28 H 0.08 0.63 6.95 -51.93 -0.36 0.27 16 29 H 0.08 0.57 8.09 -51.93 -0.42 0.15 16 30 H 0.07 0.76 7.71 -51.93 -0.40 0.36 16 31 H 0.41 1.71 9.10 45.56 0.41 2.12 16 32 H 0.08 0.54 7.84 -51.93 -0.41 0.14 16 33 H 0.07 0.57 7.85 -51.93 -0.41 0.16 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 1.14 8.04 -51.93 -0.42 0.72 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.40 5.42 3.78 -40.82 -0.15 5.26 16 39 H 0.09 1.46 6.38 -52.48 -0.33 1.13 16 40 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 41 H 0.12 3.07 6.20 -52.48 -0.33 2.75 16 42 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 43 H 0.11 2.80 7.64 -52.49 -0.40 2.39 16 LS Contribution 353.45 15.07 5.33 5.33 Total: -1.00 -31.86 353.45 -8.33 -40.19 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -4.76 Total: 12.13 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -3.50 Total: -14.07 kcal Atomic # 7 Polarization: -31.58 SS G_CDS: 0.37 Total: -31.21 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.74 Total: -25.82 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.44 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.86 -8.33 -40.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595247606.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.993 kcal (2) G-P(sol) polarization free energy of solvation -31.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds