Wall clock time and date at job start Tue Mar 31 2020 12:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 110.05399 * 2 1 4 4 O 1.20823 * 120.00231 * 238.57966 * 3 2 1 5 5 O 1.34233 * 120.00428 * 58.58212 * 3 2 1 6 6 C 1.54268 * 110.03380 * 121.41374 * 2 1 3 7 7 C 1.54888 * 104.19474 * 95.67745 * 6 2 1 8 8 C 1.54887 * 102.74759 * 37.94206 * 7 6 2 9 9 C 1.53873 * 110.03652 * 238.58359 * 2 1 3 10 10 H 1.09002 * 110.07298 * 121.40613 * 9 2 1 11 11 N 1.46504 * 110.02936 * 359.97438 * 9 2 1 12 12 C 1.34780 * 119.99758 * 156.38200 * 11 9 2 13 13 O 1.21548 * 119.99870 * 359.97438 * 12 11 9 14 14 C 1.47883 * 119.99680 * 179.97438 * 12 11 9 15 15 C 1.39921 * 120.02824 * 359.97438 * 14 12 11 16 16 C 1.38327 * 120.35779 * 180.02562 * 15 14 12 17 17 C 1.37740 * 120.41658 * 0.02562 * 16 15 14 18 18 C 1.40749 * 120.04067 * 359.97438 * 17 16 15 19 19 C 1.41435 * 120.18154 * 179.97438 * 18 17 16 20 20 H 1.07997 * 119.99911 * 155.02068 * 19 18 17 21 21 C 1.39932 * 119.99886 * 334.73695 * 19 18 17 22 22 N 1.30831 * 120.00358 * 342.33933 * 21 19 18 23 23 Si 1.86805 * 120.00209 * 162.33705 * 21 19 18 24 24 H 1.48503 * 109.46737 * 94.51978 * 23 21 19 25 25 H 1.48496 * 109.47139 * 214.51710 * 23 21 19 26 26 H 1.48501 * 109.47072 * 334.52222 * 23 21 19 27 27 C 1.39000 * 120.02435 * 180.25754 * 14 12 11 28 28 H 1.09004 * 109.47170 * 181.41430 * 1 2 3 29 29 H 1.09000 * 109.47221 * 301.41859 * 1 2 3 30 30 H 1.09004 * 109.47051 * 61.41814 * 1 2 3 31 31 H 0.96691 * 117.00519 * 179.97438 * 5 3 2 32 32 H 1.09005 * 110.48368 * 336.99767 * 6 2 1 33 33 H 1.08998 * 110.59829 * 214.41275 * 6 2 1 34 34 H 1.08998 * 110.75493 * 279.63150 * 7 6 2 35 35 H 1.08994 * 110.75614 * 156.25699 * 7 6 2 36 36 H 1.09004 * 110.48875 * 203.37769 * 8 7 6 37 37 H 1.09007 * 110.48516 * 80.74091 * 8 7 6 38 38 H 0.97001 * 119.99973 * 336.37419 * 11 9 2 39 39 H 1.08007 * 119.81884 * 0.02562 * 15 14 12 40 40 H 1.08011 * 119.79210 * 179.97438 * 16 15 14 41 41 H 1.08007 * 119.98510 * 179.97438 * 17 16 15 42 42 H 0.97003 * 120.00587 * 179.97438 * 22 21 19 43 43 H 1.07992 * 120.19975 * 359.97438 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0467 1.4156 0.0000 4 8 2.7663 1.7961 -0.8929 5 8 1.7077 2.2540 0.9920 6 6 2.0584 -0.7554 1.2369 7 6 2.3281 -2.1901 0.7192 8 6 2.8875 -1.9406 -0.7034 9 6 2.0571 -0.7535 -1.2337 10 1 2.6865 -0.0957 -1.8331 11 7 0.9359 -1.2456 -2.0381 12 6 1.1084 -1.4994 -3.3505 13 8 2.1941 -1.3195 -3.8667 14 6 -0.0232 -1.9966 -4.1624 15 6 -1.2730 -2.2043 -3.5686 16 6 -2.3360 -2.6697 -4.3214 17 6 -2.1768 -2.9346 -5.6637 18 6 -0.9271 -2.7317 -6.2786 19 6 -0.7602 -3.0033 -7.6566 20 1 0.0137 -2.4992 -8.2164 21 6 -1.5940 -3.9294 -8.2932 22 7 -2.2810 -4.7873 -7.5834 23 14 -1.7262 -3.9409 -10.1565 24 1 -0.7731 -4.9338 -10.7142 25 1 -3.1099 -4.3065 -10.5523 26 1 -1.4004 -2.5915 -10.6842 27 6 0.1555 -2.2636 -5.5148 28 1 -0.3634 -1.0274 0.0254 29 1 -0.3634 0.5357 0.8770 30 1 -0.3633 0.4917 -0.9025 31 1 2.0639 3.1519 0.9490 32 1 1.3060 -0.7695 2.0255 33 1 2.9806 -0.3008 1.5988 34 1 1.4032 -2.7651 0.6752 35 1 3.0676 -2.6930 1.3423 36 1 2.7402 -2.8196 -1.3309 37 1 3.9441 -1.6766 -0.6570 38 1 0.0695 -1.3888 -1.6262 39 1 -1.4084 -2.0001 -2.5167 40 1 -3.2967 -2.8272 -3.8536 41 1 -3.0115 -3.2982 -6.2448 42 1 -2.8592 -5.4290 -8.0247 43 1 1.1194 -2.1087 -5.9763 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595247606.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:02 Heat of formation + Delta-G solvation = -136.609926 kcal Electronic energy + Delta-G solvation = -26483.132927 eV Core-core repulsion = 22684.456262 eV Total energy + Delta-G solvation = -3798.676666 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.21995 -40.86101 -39.32994 -38.50909 -37.17019 -35.63968 -34.69310 -32.60487 -31.83724 -31.56203 -28.77524 -27.18834 -27.00041 -24.95970 -23.83940 -22.58804 -21.99876 -21.22995 -20.39966 -19.62644 -18.91752 -18.15692 -17.73922 -17.20923 -16.85980 -16.69177 -16.44877 -16.08380 -15.73263 -15.31458 -15.09443 -14.95788 -14.54969 -14.29574 -14.20839 -13.99988 -13.51549 -13.48047 -13.05938 -12.96188 -12.84348 -12.74335 -12.63079 -12.52190 -12.27926 -12.26332 -12.01583 -11.97569 -11.89534 -11.61829 -11.41624 -11.31290 -11.07538 -10.87084 -10.17148 -9.50286 -9.40494 -8.69082 -6.40969 0.36205 0.92388 1.10597 1.37568 1.44940 1.52675 1.82799 2.09359 2.20615 2.31550 2.74072 3.13223 3.48525 3.66796 3.74428 3.95726 4.15816 4.20054 4.27318 4.29737 4.39222 4.47058 4.57933 4.59619 4.75329 4.80759 4.87449 4.96247 4.97873 5.04366 5.12681 5.16799 5.18158 5.22607 5.26178 5.33642 5.46753 5.50116 5.54847 5.79242 5.95098 5.99774 6.21835 6.56674 6.60405 6.85567 6.91009 6.91734 7.26088 8.29334 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025639 B = 0.002853 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.803012 B = 9811.881566 C = 9931.335740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.059 4.059 3 C 0.493 3.507 4 O -0.553 6.553 5 O -0.497 6.497 6 C -0.098 4.098 7 C -0.114 4.114 8 C -0.136 4.136 9 C 0.139 3.861 10 H 0.072 0.928 11 N -0.703 5.703 12 C 0.561 3.439 13 O -0.589 6.589 14 C -0.124 4.124 15 C -0.187 4.187 16 C -0.107 4.107 17 C -0.160 4.160 18 C 0.074 3.926 19 C -0.505 4.505 20 H 0.067 0.933 21 C 0.040 3.960 22 N -0.821 5.821 23 Si 0.981 3.019 24 H -0.265 1.265 25 H -0.258 1.258 26 H -0.263 1.263 27 C -0.189 4.189 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.054 0.946 31 H 0.428 0.572 32 H 0.115 0.885 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.414 0.586 39 H 0.140 0.860 40 H 0.134 0.866 41 H 0.111 0.889 42 H 0.291 0.709 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.508 6.368 21.148 22.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.061 4.061 3 C 0.336 3.664 4 O -0.444 6.444 5 O -0.310 6.310 6 C -0.135 4.135 7 C -0.151 4.151 8 C -0.175 4.175 9 C 0.034 3.966 10 H 0.090 0.910 11 N -0.359 5.359 12 C 0.351 3.649 13 O -0.471 6.471 14 C -0.127 4.127 15 C -0.206 4.206 16 C -0.125 4.125 17 C -0.180 4.180 18 C 0.072 3.928 19 C -0.534 4.534 20 H 0.086 0.914 21 C -0.175 4.175 22 N -0.446 5.446 23 Si 0.801 3.199 24 H -0.189 1.189 25 H -0.182 1.182 26 H -0.187 1.187 27 C -0.209 4.209 28 H 0.114 0.886 29 H 0.121 0.879 30 H 0.073 0.927 31 H 0.289 0.711 32 H 0.134 0.866 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.112 0.888 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.257 0.743 39 H 0.158 0.842 40 H 0.152 0.848 41 H 0.128 0.872 42 H 0.102 0.898 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.134 6.022 20.596 21.488 hybrid contribution 0.339 0.545 -1.494 1.626 sum 1.473 6.567 19.102 20.253 Atomic orbital electron populations 1.21991 0.89450 1.04932 1.04244 1.21349 0.99673 0.87477 0.97605 1.23426 0.76236 0.88790 0.77918 1.90756 1.37303 1.78038 1.38275 1.84457 1.70696 1.28331 1.47523 1.22478 1.02674 0.94120 0.94218 1.22543 1.02381 0.96565 0.93633 1.22783 0.99464 0.96822 0.98431 1.21601 0.88056 0.95910 0.91019 0.91022 1.46040 1.14984 1.67105 1.07795 1.18744 0.87552 0.76090 0.82526 1.90668 1.28664 1.54544 1.73175 1.19593 0.94177 1.05050 0.93882 1.20854 0.91721 1.08359 0.99690 1.21023 0.98872 0.98908 0.93709 1.21525 0.96886 1.04189 0.95393 1.17864 0.91255 0.90069 0.93655 1.19790 1.16470 1.22374 0.94802 0.91443 1.26661 0.92721 0.92447 1.05674 1.69819 1.21631 1.13041 1.40141 0.85218 0.79071 0.79557 0.76023 1.18938 1.18223 1.18723 1.21175 0.97402 1.08884 0.93461 0.88638 0.87910 0.92701 0.71060 0.86628 0.90446 0.89697 0.88844 0.92524 0.90847 0.74324 0.84196 0.84771 0.87156 0.89773 0.90046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 6.95 71.98 0.50 -1.61 16 2 C -0.06 -1.11 0.88 -52.21 -0.05 -1.15 16 3 C 0.49 10.64 6.81 71.24 0.49 11.13 16 4 O -0.55 -17.36 15.97 21.97 0.35 -17.01 16 5 O -0.50 -6.55 13.28 -51.44 -0.68 -7.23 16 6 C -0.10 -1.18 5.88 31.67 0.19 -0.99 16 7 C -0.11 -1.61 6.91 31.88 0.22 -1.39 16 8 C -0.14 -3.27 6.53 31.67 0.21 -3.06 16 9 C 0.14 3.88 2.80 45.71 0.13 4.01 16 10 H 0.07 2.67 5.86 -2.39 -0.01 2.65 16 11 N -0.70 -21.59 4.45 -441.93 -1.97 -23.55 16 12 C 0.56 24.07 7.76 86.80 0.67 24.74 16 13 O -0.59 -30.14 16.01 -3.87 -0.06 -30.20 16 14 C -0.12 -5.71 5.87 -20.13 -0.12 -5.82 16 15 C -0.19 -7.21 9.55 22.70 0.22 -6.99 16 16 C -0.11 -4.44 10.01 22.17 0.22 -4.21 16 17 C -0.16 -8.09 8.68 22.77 0.20 -7.89 16 18 C 0.07 4.10 5.56 -21.32 -0.12 3.98 16 19 C -0.51 -28.36 9.05 23.47 0.21 -28.15 16 20 H 0.07 3.78 7.91 -2.91 -0.02 3.76 16 21 C 0.04 2.05 5.13 85.25 0.44 2.49 16 22 N -0.82 -42.19 10.99 21.82 0.24 -41.95 16 23 Si 0.98 38.77 29.60 68.60 2.03 40.80 16 24 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 25 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 26 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 27 C -0.19 -10.22 9.34 23.01 0.21 -10.01 16 28 H 0.10 1.02 6.95 -2.39 -0.02 1.01 16 29 H 0.10 0.98 8.09 -2.39 -0.02 0.96 16 30 H 0.05 0.99 7.71 -2.38 -0.02 0.97 16 31 H 0.43 2.43 9.10 -74.06 -0.67 1.76 16 32 H 0.12 0.77 7.84 -2.38 -0.02 0.75 16 33 H 0.08 0.91 7.85 -2.39 -0.02 0.89 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.06 1.62 8.04 -2.38 -0.02 1.60 16 37 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 38 H 0.41 9.92 3.78 -92.71 -0.35 9.57 16 39 H 0.14 3.91 6.38 -2.91 -0.02 3.89 16 40 H 0.13 4.48 8.06 -2.90 -0.02 4.46 16 41 H 0.11 5.73 6.20 -2.91 -0.02 5.71 16 42 H 0.29 13.38 8.30 -92.71 -0.77 12.61 16 43 H 0.08 4.68 7.64 -2.91 -0.02 4.66 16 Total: -1.00 -76.53 353.45 3.57 -72.96 By element: Atomic # 1 Polarization: 31.07 SS G_CDS: 0.04 Total: 31.11 kcal Atomic # 6 Polarization: -28.54 SS G_CDS: 3.62 Total: -24.92 kcal Atomic # 7 Polarization: -63.78 SS G_CDS: -1.73 Total: -65.50 kcal Atomic # 8 Polarization: -54.05 SS G_CDS: -0.39 Total: -54.44 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.80 kcal Total: -76.53 3.57 -72.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595247606.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.648 kcal (2) G-P(sol) polarization free energy of solvation -76.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds