Wall clock time and date at job start Tue Mar 31 2020 12:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 110.01733 * 2 1 4 4 O 1.20828 * 119.99770 * 120.70193 * 3 2 1 5 5 O 1.34229 * 120.00156 * 300.70182 * 3 2 1 6 6 C 1.54267 * 110.03131 * 238.60943 * 2 1 3 7 7 C 1.54880 * 104.19502 * 264.32698 * 6 2 1 8 8 C 1.54894 * 102.75111 * 322.05640 * 7 6 2 9 9 C 1.53877 * 110.03368 * 121.44384 * 2 1 3 10 10 H 1.08995 * 110.02849 * 238.56942 * 9 2 1 11 11 N 1.46501 * 110.02898 * 359.97438 * 9 2 1 12 12 C 1.34780 * 119.99436 * 204.99817 * 11 9 2 13 13 O 1.21576 * 120.00217 * 0.02562 * 12 11 9 14 14 C 1.47643 * 119.99383 * 180.02562 * 12 11 9 15 15 C 1.40009 * 119.89849 * 359.72327 * 14 12 11 16 16 C 1.36322 * 120.10838 * 179.75913 * 15 14 12 17 17 C 1.40894 * 119.88846 * 0.51691 * 16 15 14 18 18 C 1.41106 * 120.10047 * 179.71808 * 17 16 15 19 19 H 1.07996 * 119.99577 * 155.09781 * 18 17 16 20 20 C 1.40226 * 120.00205 * 335.08792 * 18 17 16 21 21 N 1.30644 * 119.99689 * 342.22005 * 20 18 17 22 22 Si 1.86797 * 119.99964 * 162.21238 * 20 18 17 23 23 H 1.48503 * 109.47123 * 94.66809 * 22 20 18 24 24 H 1.48498 * 109.47331 * 214.66839 * 22 20 18 25 25 H 1.48497 * 109.47081 * 334.66648 * 22 20 18 26 26 C 1.40890 * 119.79034 * 359.74173 * 17 16 15 27 27 C 1.36312 * 119.89712 * 359.97438 * 26 17 16 28 28 H 1.08999 * 109.47413 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47471 * 59.93363 * 1 2 3 30 30 H 1.09008 * 109.47102 * 299.94061 * 1 2 3 31 31 H 0.96701 * 116.99985 * 179.97438 * 5 3 2 32 32 H 1.09001 * 110.48249 * 23.00581 * 6 2 1 33 33 H 1.09000 * 110.48361 * 145.51352 * 6 2 1 34 34 H 1.09002 * 110.75793 * 80.37298 * 7 6 2 35 35 H 1.09007 * 110.75950 * 203.55820 * 7 6 2 36 36 H 1.08997 * 110.48770 * 156.62276 * 8 7 6 37 37 H 1.08999 * 110.48431 * 279.13555 * 8 7 6 38 38 H 0.96998 * 120.00302 * 25.00432 * 11 9 2 39 39 H 1.07997 * 119.94734 * 0.02562 * 15 14 12 40 40 H 1.07996 * 120.05666 * 180.28094 * 16 15 14 41 41 H 0.97010 * 119.99500 * 179.97438 * 21 20 18 42 42 H 1.08009 * 120.04639 * 180.02562 * 26 17 16 43 43 H 1.07999 * 119.95082 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0459 1.4160 0.0000 4 8 2.7546 1.8007 0.8998 5 8 1.7179 2.2498 -0.9995 6 6 2.0584 -0.7549 -1.2372 7 6 2.3279 -2.1898 -0.7202 8 6 2.8874 -1.9410 0.7026 9 6 2.0571 -0.7541 1.2334 10 1 2.6867 -0.0962 1.8323 11 7 0.9359 -1.2455 2.0381 12 6 1.1013 -1.4731 3.3562 13 8 2.1808 -1.2703 3.8774 14 6 -0.0285 -1.9689 4.1672 15 6 -1.2723 -2.1962 3.5659 16 6 -2.3170 -2.6586 4.3096 17 6 -2.1466 -2.8973 5.6876 18 6 -3.2266 -3.3702 6.4629 19 1 -3.0380 -3.9235 7.3709 20 6 -4.5448 -3.1216 6.0543 21 7 -4.7914 -2.1835 5.1791 22 14 -5.9480 -4.1318 6.7613 23 1 -6.5399 -3.4146 7.9192 24 1 -6.9872 -4.3326 5.7197 25 1 -5.4325 -5.4511 7.2070 26 6 -0.8945 -2.6618 6.2892 27 6 0.1459 -2.2050 5.5362 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5148 -0.8893 30 1 -0.3634 0.5129 0.8906 31 1 2.0725 3.1484 -0.9558 32 1 1.3060 -0.7686 -2.0258 33 1 2.9798 -0.2979 -1.5982 34 1 1.4030 -2.7648 -0.6764 35 1 3.0651 -2.6937 -1.3454 36 1 2.7401 -2.8203 1.3296 37 1 3.9445 -1.6792 0.6565 38 1 0.0746 -1.4071 1.6224 39 1 -1.4031 -2.0091 2.5103 40 1 -3.2748 -2.8380 3.8440 41 1 -5.7033 -2.0117 4.8962 42 1 -0.7591 -2.8438 7.3452 43 1 1.1059 -2.0238 5.9966 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595251554.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:09 Heat of formation + Delta-G solvation = -119.431301 kcal Electronic energy + Delta-G solvation = -26532.834821 eV Core-core repulsion = 22734.903077 eV Total energy + Delta-G solvation = -3797.931744 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.14190 -39.31469 -37.95529 -36.84027 -36.24656 -33.87578 -33.21141 -31.69176 -30.26430 -29.44841 -27.79814 -26.14635 -25.72258 -23.47689 -22.03872 -21.00559 -20.86117 -19.71474 -19.12198 -18.00443 -17.53770 -17.37503 -16.63413 -15.84710 -15.55904 -15.43198 -14.87646 -14.47727 -14.02295 -13.97803 -13.62155 -13.39827 -13.30158 -12.98108 -12.81232 -12.64526 -12.18789 -12.09631 -11.88990 -11.73862 -11.59310 -11.43703 -11.29768 -11.25009 -11.07624 -11.01614 -10.92660 -10.78786 -10.63685 -10.35931 -10.05642 -9.56704 -9.35592 -8.93824 -8.58804 -7.72792 -7.54438 -7.04508 -4.60780 2.05726 2.23478 2.76617 2.89810 2.93881 3.00212 3.03032 3.73236 3.79343 3.86736 4.11447 4.37267 4.58730 4.60518 4.96611 5.04685 5.15674 5.21948 5.40470 5.52086 5.54664 5.59226 5.63220 5.67153 5.81312 5.90060 5.95125 6.01104 6.09923 6.17903 6.27195 6.32273 6.38072 6.76204 6.82106 6.95889 7.06883 7.12869 7.43045 7.64882 7.73002 7.78333 7.85342 8.06665 8.24602 8.39048 8.62558 8.74714 9.10700 9.87649 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020214 B = 0.003044 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.875087 B = 9195.740012 C = 9614.566094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.063 4.063 3 C 0.489 3.511 4 O -0.504 6.504 5 O -0.513 6.513 6 C -0.107 4.107 7 C -0.124 4.124 8 C -0.133 4.133 9 C 0.150 3.850 10 H 0.112 0.888 11 N -0.736 5.736 12 C 0.571 3.429 13 O -0.570 6.570 14 C -0.283 4.283 15 C -0.063 4.063 16 C -0.178 4.178 17 C 0.129 3.871 18 C -0.443 4.443 19 H 0.085 0.915 20 C 0.075 3.925 21 N -0.772 5.772 22 Si 0.912 3.088 23 H -0.267 1.267 24 H -0.273 1.273 25 H -0.257 1.257 26 C -0.238 4.238 27 C -0.022 4.022 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.408 0.592 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.398 0.602 39 H 0.087 0.913 40 H 0.120 0.880 41 H 0.286 0.714 42 H 0.098 0.902 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.099 2.642 -14.663 15.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.065 4.065 3 C 0.330 3.670 4 O -0.391 6.391 5 O -0.325 6.325 6 C -0.145 4.145 7 C -0.162 4.162 8 C -0.172 4.172 9 C 0.044 3.956 10 H 0.130 0.870 11 N -0.392 5.392 12 C 0.366 3.634 13 O -0.451 6.451 14 C -0.288 4.288 15 C -0.082 4.082 16 C -0.197 4.197 17 C 0.126 3.874 18 C -0.471 4.471 19 H 0.103 0.897 20 C -0.146 4.146 21 N -0.396 5.396 22 Si 0.736 3.264 23 H -0.192 1.192 24 H -0.197 1.197 25 H -0.181 1.181 26 C -0.258 4.258 27 C -0.041 4.041 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.267 0.733 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.236 0.764 39 H 0.105 0.895 40 H 0.138 0.862 41 H 0.097 0.903 42 H 0.116 0.884 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.692 2.630 -14.178 15.503 hybrid contribution -0.927 0.346 0.081 0.993 sum 4.765 2.976 -14.098 15.176 Atomic orbital electron populations 1.21897 0.91093 1.03542 1.03730 1.21369 0.98457 0.88063 0.98595 1.23253 0.77132 0.88191 0.78387 1.90747 1.35321 1.76900 1.36099 1.84522 1.71810 1.27388 1.48785 1.22432 1.01475 0.95465 0.95078 1.22540 1.01556 0.95666 0.96403 1.22799 0.99407 0.98904 0.96068 1.21417 0.88970 0.95058 0.90133 0.87013 1.46228 1.13836 1.69920 1.09206 1.18610 0.88368 0.75692 0.80718 1.90642 1.28168 1.54280 1.72056 1.18900 0.93577 1.21512 0.94779 1.20442 0.92753 0.98087 0.96931 1.20964 0.98210 1.06567 0.93970 1.17780 0.91690 0.86103 0.91853 1.19844 0.90059 1.29299 1.07896 0.89732 1.26090 1.00923 0.93745 0.93861 1.69748 1.23127 1.22658 1.24016 0.86220 0.79578 0.81103 0.79529 1.19247 1.19740 1.18085 1.20722 0.94847 1.11924 0.98289 1.20369 0.97262 0.94194 0.92259 0.90463 0.90686 0.90991 0.73313 0.89896 0.90989 0.90840 0.90919 0.90274 0.90850 0.76369 0.89538 0.86243 0.90272 0.88395 0.88089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 6.96 37.16 0.26 -1.25 16 2 C -0.06 -0.73 0.88 -154.54 -0.14 -0.86 16 3 C 0.49 6.09 6.81 36.01 0.25 6.33 16 4 O -0.50 -8.18 15.97 -18.75 -0.30 -8.48 16 5 O -0.51 -4.59 13.32 -39.25 -0.52 -5.11 16 6 C -0.11 -0.95 5.87 -25.08 -0.15 -1.10 16 7 C -0.12 -1.16 6.91 -24.74 -0.17 -1.33 16 8 C -0.13 -1.70 6.54 -25.07 -0.16 -1.86 16 9 C 0.15 2.23 2.82 -66.81 -0.19 2.05 16 10 H 0.11 2.07 5.82 -51.93 -0.30 1.76 16 11 N -0.74 -12.32 4.44 -53.73 -0.24 -12.55 16 12 C 0.57 12.27 7.76 -12.42 -0.10 12.17 16 13 O -0.57 -13.88 15.98 5.30 0.08 -13.79 16 14 C -0.28 -6.47 5.89 -104.73 -0.62 -7.09 16 15 C -0.06 -1.38 9.47 -39.61 -0.38 -1.75 16 16 C -0.18 -4.30 8.63 -39.27 -0.34 -4.64 16 17 C 0.13 3.27 5.57 -106.80 -0.60 2.67 16 18 C -0.44 -10.97 9.04 -37.75 -0.34 -11.31 16 19 H 0.08 2.00 7.91 -52.49 -0.42 1.59 16 20 C 0.08 1.73 5.13 -17.31 -0.09 1.64 16 21 N -0.77 -18.32 10.97 55.56 0.61 -17.71 16 22 Si 0.91 17.11 29.60 -169.99 -5.03 12.08 16 23 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 24 H -0.27 -4.98 7.11 56.52 0.40 -4.57 16 25 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 26 C -0.24 -5.78 9.73 -39.27 -0.38 -6.16 16 27 C -0.02 -0.51 9.52 -39.61 -0.38 -0.89 16 28 H 0.08 0.73 6.84 -51.93 -0.36 0.37 16 29 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 30 H 0.07 0.87 7.80 -51.92 -0.40 0.47 16 31 H 0.41 2.00 9.10 45.56 0.41 2.42 16 32 H 0.08 0.60 7.84 -51.93 -0.41 0.20 16 33 H 0.07 0.61 7.85 -51.93 -0.41 0.20 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 36 H 0.08 1.14 8.04 -51.93 -0.42 0.72 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.40 5.86 3.80 -40.82 -0.16 5.70 16 39 H 0.09 1.58 6.37 -52.49 -0.33 1.25 16 40 H 0.12 2.91 6.17 -52.49 -0.32 2.59 16 41 H 0.29 6.09 8.29 -40.82 -0.34 5.75 16 42 H 0.10 2.22 8.06 -52.48 -0.42 1.80 16 43 H 0.10 2.34 7.63 -52.49 -0.40 1.94 16 LS Contribution 353.22 15.07 5.32 5.32 Total: -1.00 -31.01 353.22 -8.35 -39.35 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -4.76 Total: 14.28 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -3.51 Total: -13.39 kcal Atomic # 7 Polarization: -30.63 SS G_CDS: 0.37 Total: -30.26 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.74 Total: -27.38 kcal Atomic # 14 Polarization: 17.11 SS G_CDS: -5.03 Total: 12.08 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.01 -8.35 -39.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595251554.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.078 kcal (2) G-P(sol) polarization free energy of solvation -31.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds