Wall clock time and date at job start Tue Mar 31 2020 12:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 110.01733 * 2 1 4 4 O 1.20828 * 119.99770 * 120.70193 * 3 2 1 5 5 O 1.34229 * 120.00156 * 300.70182 * 3 2 1 6 6 C 1.54267 * 110.03131 * 238.60943 * 2 1 3 7 7 C 1.54880 * 104.19502 * 264.32698 * 6 2 1 8 8 C 1.54894 * 102.75111 * 322.05640 * 7 6 2 9 9 C 1.53877 * 110.03368 * 121.44384 * 2 1 3 10 10 H 1.08995 * 110.02849 * 238.56942 * 9 2 1 11 11 N 1.46501 * 110.02898 * 359.97438 * 9 2 1 12 12 C 1.34780 * 119.99436 * 204.99817 * 11 9 2 13 13 O 1.21576 * 120.00217 * 0.02562 * 12 11 9 14 14 C 1.47643 * 119.99383 * 180.02562 * 12 11 9 15 15 C 1.40009 * 119.89849 * 359.72327 * 14 12 11 16 16 C 1.36322 * 120.10838 * 179.75913 * 15 14 12 17 17 C 1.40894 * 119.88846 * 0.51691 * 16 15 14 18 18 C 1.41106 * 120.10047 * 179.71808 * 17 16 15 19 19 H 1.07996 * 119.99577 * 155.09781 * 18 17 16 20 20 C 1.40226 * 120.00205 * 335.08792 * 18 17 16 21 21 N 1.30644 * 119.99689 * 342.22005 * 20 18 17 22 22 Si 1.86797 * 119.99964 * 162.21238 * 20 18 17 23 23 H 1.48503 * 109.47123 * 94.66809 * 22 20 18 24 24 H 1.48498 * 109.47331 * 214.66839 * 22 20 18 25 25 H 1.48497 * 109.47081 * 334.66648 * 22 20 18 26 26 C 1.40890 * 119.79034 * 359.74173 * 17 16 15 27 27 C 1.36312 * 119.89712 * 359.97438 * 26 17 16 28 28 H 1.08999 * 109.47413 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47471 * 59.93363 * 1 2 3 30 30 H 1.09008 * 109.47102 * 299.94061 * 1 2 3 31 31 H 0.96701 * 116.99985 * 179.97438 * 5 3 2 32 32 H 1.09001 * 110.48249 * 23.00581 * 6 2 1 33 33 H 1.09000 * 110.48361 * 145.51352 * 6 2 1 34 34 H 1.09002 * 110.75793 * 80.37298 * 7 6 2 35 35 H 1.09007 * 110.75950 * 203.55820 * 7 6 2 36 36 H 1.08997 * 110.48770 * 156.62276 * 8 7 6 37 37 H 1.08999 * 110.48431 * 279.13555 * 8 7 6 38 38 H 0.96998 * 120.00302 * 25.00432 * 11 9 2 39 39 H 1.07997 * 119.94734 * 0.02562 * 15 14 12 40 40 H 1.07996 * 120.05666 * 180.28094 * 16 15 14 41 41 H 0.97010 * 119.99500 * 179.97438 * 21 20 18 42 42 H 1.08009 * 120.04639 * 180.02562 * 26 17 16 43 43 H 1.07999 * 119.95082 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0459 1.4160 0.0000 4 8 2.7546 1.8007 0.8998 5 8 1.7179 2.2498 -0.9995 6 6 2.0584 -0.7549 -1.2372 7 6 2.3279 -2.1898 -0.7202 8 6 2.8874 -1.9410 0.7026 9 6 2.0571 -0.7541 1.2334 10 1 2.6867 -0.0962 1.8323 11 7 0.9359 -1.2455 2.0381 12 6 1.1013 -1.4731 3.3562 13 8 2.1808 -1.2703 3.8774 14 6 -0.0285 -1.9689 4.1672 15 6 -1.2723 -2.1962 3.5659 16 6 -2.3170 -2.6586 4.3096 17 6 -2.1466 -2.8973 5.6876 18 6 -3.2266 -3.3702 6.4629 19 1 -3.0380 -3.9235 7.3709 20 6 -4.5448 -3.1216 6.0543 21 7 -4.7914 -2.1835 5.1791 22 14 -5.9480 -4.1318 6.7613 23 1 -6.5399 -3.4146 7.9192 24 1 -6.9872 -4.3326 5.7197 25 1 -5.4325 -5.4511 7.2070 26 6 -0.8945 -2.6618 6.2892 27 6 0.1459 -2.2050 5.5362 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5148 -0.8893 30 1 -0.3634 0.5129 0.8906 31 1 2.0725 3.1484 -0.9558 32 1 1.3060 -0.7686 -2.0258 33 1 2.9798 -0.2979 -1.5982 34 1 1.4030 -2.7648 -0.6764 35 1 3.0651 -2.6937 -1.3454 36 1 2.7401 -2.8203 1.3296 37 1 3.9445 -1.6792 0.6565 38 1 0.0746 -1.4071 1.6224 39 1 -1.4031 -2.0091 2.5103 40 1 -3.2748 -2.8380 3.8440 41 1 -5.7033 -2.0117 4.8962 42 1 -0.7591 -2.8438 7.3452 43 1 1.1059 -2.0238 5.9966 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595251554.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:08 Heat of formation + Delta-G solvation = -138.369312 kcal Electronic energy + Delta-G solvation = -26533.656035 eV Core-core repulsion = 22734.903077 eV Total energy + Delta-G solvation = -3798.752958 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.17964 -40.74890 -39.35078 -38.46905 -37.17389 -35.67190 -34.64195 -32.59741 -32.01409 -31.30237 -29.03066 -27.39184 -27.01313 -24.61178 -23.57308 -22.79421 -21.95818 -21.11361 -20.33010 -19.36304 -18.93159 -18.75541 -17.78730 -17.19219 -16.97997 -16.64459 -16.15727 -15.76445 -15.73324 -15.26793 -15.06573 -14.90461 -14.48382 -14.31591 -14.00279 -13.89801 -13.73486 -13.47856 -13.24687 -12.96779 -12.84303 -12.76678 -12.64608 -12.55054 -12.35052 -12.26220 -11.97880 -11.92100 -11.77209 -11.61366 -11.38432 -11.30468 -11.11525 -10.71092 -10.06919 -9.57894 -9.40664 -8.79308 -6.48134 0.43948 1.10062 1.14619 1.39498 1.43174 1.55821 1.87205 2.11980 2.18858 2.44178 2.78222 3.15731 3.50295 3.69503 3.75092 4.14746 4.17749 4.24526 4.28387 4.30220 4.32580 4.43594 4.58947 4.61150 4.73671 4.80401 4.91069 4.91806 4.98482 5.03410 5.13352 5.15458 5.17540 5.23025 5.29809 5.34579 5.52876 5.57835 5.62723 5.81869 5.94091 5.99102 6.22639 6.53582 6.69717 6.77155 6.88864 6.91371 7.44861 8.16201 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020214 B = 0.003044 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.875087 B = 9195.740012 C = 9614.566094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.061 4.061 3 C 0.493 3.507 4 O -0.552 6.552 5 O -0.498 6.498 6 C -0.097 4.097 7 C -0.114 4.114 8 C -0.134 4.134 9 C 0.141 3.859 10 H 0.071 0.929 11 N -0.715 5.715 12 C 0.569 3.431 13 O -0.607 6.607 14 C -0.294 4.294 15 C -0.052 4.052 16 C -0.195 4.195 17 C 0.103 3.897 18 C -0.474 4.474 19 H 0.084 0.916 20 C 0.040 3.960 21 N -0.797 5.797 22 Si 0.987 3.013 23 H -0.263 1.263 24 H -0.260 1.260 25 H -0.258 1.258 26 C -0.253 4.253 27 C -0.034 4.034 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.049 0.951 31 H 0.428 0.572 32 H 0.112 0.888 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.409 0.591 39 H 0.125 0.875 40 H 0.117 0.883 41 H 0.298 0.702 42 H 0.102 0.898 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.520 2.262 -17.598 18.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.063 4.063 3 C 0.336 3.664 4 O -0.443 6.443 5 O -0.311 6.311 6 C -0.135 4.135 7 C -0.151 4.151 8 C -0.173 4.173 9 C 0.036 3.964 10 H 0.089 0.911 11 N -0.370 5.370 12 C 0.363 3.637 13 O -0.491 6.491 14 C -0.298 4.298 15 C -0.071 4.071 16 C -0.214 4.214 17 C 0.099 3.901 18 C -0.501 4.501 19 H 0.102 0.898 20 C -0.180 4.180 21 N -0.420 5.420 22 Si 0.807 3.193 23 H -0.187 1.187 24 H -0.184 1.184 25 H -0.181 1.181 26 C -0.273 4.273 27 C -0.054 4.054 28 H 0.110 0.890 29 H 0.119 0.881 30 H 0.068 0.932 31 H 0.289 0.711 32 H 0.131 0.869 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.113 0.887 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.250 0.750 39 H 0.142 0.858 40 H 0.134 0.866 41 H 0.109 0.891 42 H 0.121 0.879 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.103 2.280 -17.186 17.816 hybrid contribution -0.376 0.577 0.947 1.171 sum 3.727 2.857 -16.239 16.904 Atomic orbital electron populations 1.21952 0.89907 1.04533 1.03985 1.21371 0.99285 0.87603 0.98000 1.23428 0.76090 0.88801 0.78038 1.90748 1.37633 1.77832 1.38051 1.84465 1.71165 1.28454 1.46975 1.22472 1.02610 0.94263 0.94138 1.22533 1.02313 0.96416 0.93870 1.22762 0.99396 0.96891 0.98219 1.21533 0.88184 0.95822 0.90835 0.91092 1.46027 1.15028 1.68217 1.07745 1.18493 0.87375 0.75657 0.82165 1.90619 1.29313 1.55991 1.73163 1.19164 0.94597 1.21294 0.94774 1.20694 0.91468 0.96283 0.98608 1.21013 0.98719 1.07894 0.93818 1.18130 0.92250 0.86842 0.92845 1.20116 0.91240 1.30281 1.08465 0.89762 1.26903 1.02736 0.94320 0.93999 1.69759 1.24538 1.23227 1.24484 0.85112 0.76167 0.79077 0.78992 1.18747 1.18371 1.18149 1.20846 0.95032 1.12654 0.98725 1.20498 0.97119 0.94577 0.93158 0.89050 0.88057 0.93164 0.71082 0.86921 0.90290 0.90012 0.88693 0.92381 0.90763 0.74978 0.85763 0.86554 0.89107 0.87935 0.88344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 6.96 71.98 0.50 -2.12 16 2 C -0.06 -1.28 0.88 -52.20 -0.05 -1.32 16 3 C 0.49 11.64 6.81 71.24 0.48 12.12 16 4 O -0.55 -18.23 15.97 21.96 0.35 -17.88 16 5 O -0.50 -7.53 13.32 -51.41 -0.68 -8.21 16 6 C -0.10 -1.35 5.87 31.67 0.19 -1.17 16 7 C -0.11 -1.76 6.91 31.88 0.22 -1.54 16 8 C -0.13 -3.32 6.54 31.67 0.21 -3.12 16 9 C 0.14 4.20 2.82 45.71 0.13 4.33 16 10 H 0.07 2.75 5.82 -2.39 -0.01 2.74 16 11 N -0.72 -23.74 4.44 -442.17 -1.96 -25.70 16 12 C 0.57 25.01 7.76 86.73 0.67 25.69 16 13 O -0.61 -30.83 15.98 -3.95 -0.06 -30.89 16 14 C -0.29 -13.68 5.89 -19.93 -0.12 -13.80 16 15 C -0.05 -2.24 9.47 22.25 0.21 -2.03 16 16 C -0.20 -9.51 8.63 22.47 0.19 -9.32 16 17 C 0.10 5.33 5.57 -21.28 -0.12 5.21 16 18 C -0.47 -23.86 9.04 23.46 0.21 -23.65 16 19 H 0.08 4.09 7.91 -2.91 -0.02 4.06 16 20 C 0.04 1.82 5.13 85.35 0.44 2.26 16 21 N -0.80 -37.45 10.97 21.87 0.24 -37.21 16 22 Si 0.99 34.29 29.60 68.60 2.03 36.32 16 23 H -0.26 -8.90 7.11 99.48 0.71 -8.19 16 24 H -0.26 -8.43 7.11 99.48 0.71 -7.72 16 25 H -0.26 -8.91 7.11 99.48 0.71 -8.21 16 26 C -0.25 -12.76 9.73 22.47 0.22 -12.55 16 27 C -0.03 -1.69 9.52 22.25 0.21 -1.48 16 28 H 0.09 1.37 6.84 -2.39 -0.02 1.36 16 29 H 0.10 1.32 8.13 -2.39 -0.02 1.30 16 30 H 0.05 1.13 7.80 -2.38 -0.02 1.11 16 31 H 0.43 3.14 9.10 -74.06 -0.67 2.47 16 32 H 0.11 1.00 7.84 -2.39 -0.02 0.98 16 33 H 0.08 1.04 7.85 -2.39 -0.02 1.02 16 34 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.06 1.68 8.04 -2.39 -0.02 1.66 16 37 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.41 11.39 3.80 -92.71 -0.35 11.04 16 39 H 0.12 4.29 6.37 -2.91 -0.02 4.27 16 40 H 0.12 5.68 6.17 -2.91 -0.02 5.67 16 41 H 0.30 12.35 8.29 -92.70 -0.77 11.58 16 42 H 0.10 4.88 8.06 -2.91 -0.02 4.86 16 43 H 0.10 4.81 7.63 -2.91 -0.02 4.78 16 Total: -1.00 -70.82 353.22 3.55 -67.27 By element: Atomic # 1 Polarization: 38.75 SS G_CDS: 0.04 Total: 38.79 kcal Atomic # 6 Polarization: -26.10 SS G_CDS: 3.61 Total: -22.49 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: -1.72 Total: -62.91 kcal Atomic # 8 Polarization: -56.59 SS G_CDS: -0.40 Total: -56.98 kcal Atomic # 14 Polarization: 34.29 SS G_CDS: 2.03 Total: 36.32 kcal Total: -70.82 3.55 -67.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595251554.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.101 kcal (2) G-P(sol) polarization free energy of solvation -70.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds