Wall clock time and date at job start Tue Mar 31 2020 11:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00115 * 2 1 4 4 H 1.48494 * 109.46970 * 239.99702 * 3 2 1 5 5 H 1.48499 * 109.47039 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47010 * 119.99977 * 3 2 1 7 7 C 1.37883 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99972 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99495 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.50346 * 60.07679 * 9 7 2 11 11 C 1.53121 * 109.50141 * 299.99419 * 9 7 2 12 12 C 1.53117 * 109.15905 * 182.40966 * 11 9 7 13 13 C 1.53036 * 109.27734 * 57.65305 * 12 11 9 14 14 N 1.46841 * 109.52572 * 300.81838 * 13 12 11 15 15 C 1.46904 * 111.00030 * 185.83914 * 14 13 12 16 16 C 1.50695 * 109.46975 * 66.04791 * 15 14 13 17 17 C 1.35039 * 126.08748 * 260.14397 * 16 15 14 18 18 N 1.35054 * 108.02973 * 180.27606 * 17 16 15 19 19 H 0.96994 * 125.91360 * 179.73993 * 18 17 16 20 20 N 1.40075 * 108.17378 * 359.74947 * 18 17 16 21 21 C 1.31770 * 108.08995 * 359.97438 * 20 18 17 22 22 C 1.47918 * 126.06660 * 179.97438 * 21 20 18 23 23 C 1.34743 * 125.26641 * 325.03109 * 22 21 20 24 24 C 1.38024 * 114.69884 * 180.30518 * 23 22 21 25 25 C 1.33569 * 115.05965 * 359.48663 * 24 23 22 26 26 S 1.75861 * 109.76318 * 0.48494 * 25 24 23 27 27 C 1.46850 * 111.19696 * 61.74493 * 14 13 12 28 28 H 0.97001 * 120.00411 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.52149 * 62.50301 * 11 9 7 30 30 H 1.08995 * 109.57411 * 302.34370 * 11 9 7 31 31 H 1.09007 * 109.49909 * 297.71182 * 12 11 9 32 32 H 1.08998 * 109.50068 * 177.59793 * 12 11 9 33 33 H 1.09004 * 109.45901 * 180.80184 * 13 12 11 34 34 H 1.09004 * 109.46459 * 60.84248 * 13 12 11 35 35 H 1.08997 * 109.46812 * 306.05064 * 15 14 13 36 36 H 1.09001 * 109.47183 * 186.04930 * 15 14 13 37 37 H 1.08007 * 125.98276 * 0.05807 * 17 16 15 38 38 H 1.08002 * 122.64660 * 0.02926 * 23 22 21 39 39 H 1.08002 * 122.46576 * 179.70871 * 24 23 22 40 40 H 1.08002 * 125.12091 * 180.20697 * 25 24 23 41 41 H 1.09003 * 109.46014 * 58.27039 * 27 14 13 42 42 H 1.09001 * 109.46461 * 178.23858 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6255 -2.5582 -0.8902 11 6 0.3700 -2.5808 1.2503 12 6 -0.3457 -3.9342 1.2731 13 6 0.6944 -5.0563 1.2417 14 7 1.5110 -4.9348 0.0274 15 6 2.4286 -6.0742 -0.1063 16 6 1.6344 -7.3347 -0.3330 17 6 1.3276 -8.2603 0.6012 18 7 0.6131 -9.2375 0.0025 19 1 0.2626 -10.0321 0.4344 20 7 0.4659 -8.9049 -1.3502 21 6 1.0767 -7.7559 -1.5579 22 6 1.1676 -7.0388 -2.8484 23 6 1.2726 -7.6236 -4.0577 24 6 1.3495 -6.7444 -5.1189 25 6 1.2974 -5.4515 -4.7872 26 16 1.1563 -5.2906 -3.0417 27 6 2.2448 -3.6629 0.0060 28 1 -0.4851 0.8400 -0.0004 29 1 -0.3679 -1.7788 1.2287 30 1 0.9900 -2.4815 2.1412 31 1 -0.9963 -4.0165 0.4024 32 1 -0.9414 -4.0154 2.1823 33 1 0.1876 -6.0214 1.2436 34 1 1.3359 -4.9816 2.1199 35 1 3.0178 -6.1750 0.8051 36 1 3.0945 -5.9071 -0.9529 37 1 1.6078 -8.2268 1.6438 38 1 1.2992 -8.6957 -4.1861 39 1 1.4412 -7.0773 -6.1422 40 1 1.3404 -4.6288 -5.4855 41 1 2.8790 -3.5947 0.8899 42 1 2.8641 -3.6159 -0.8897 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597173889.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:21 Heat of formation + Delta-G solvation = 107.016880 kcal Electronic energy + Delta-G solvation = -24469.942413 eV Core-core repulsion = 21156.875821 eV Total energy + Delta-G solvation = -3313.066592 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.17366 -38.06284 -37.35242 -34.05173 -32.43302 -31.80467 -30.24447 -29.50201 -28.53269 -25.51576 -24.86741 -24.29862 -21.98911 -21.41832 -21.33852 -19.96428 -18.60252 -18.52515 -17.69531 -16.62545 -16.31094 -15.31928 -15.09214 -14.71732 -14.42858 -14.02479 -13.91331 -13.62745 -13.16462 -12.91319 -12.66252 -12.55667 -12.32074 -12.24692 -12.04185 -11.93520 -11.66345 -11.20106 -10.90906 -10.69932 -10.63786 -10.60613 -10.17656 -10.07398 -9.79281 -9.76585 -9.42119 -9.03642 -8.66493 -8.60966 -8.25909 -8.11175 -8.05588 -7.57486 -5.93391 -3.99370 1.00295 1.79763 2.04867 2.41679 2.69485 2.88767 3.27039 3.34284 3.39327 3.41650 4.44436 4.56575 4.68894 4.89192 5.26544 5.29329 5.32983 5.36702 5.66630 5.72007 5.77028 5.80798 5.86819 5.95544 6.11308 6.18031 6.28454 6.32843 6.41042 6.46889 6.57422 6.65482 6.68105 6.77920 6.80941 7.02614 7.21987 7.27790 7.45168 7.62482 7.73804 7.79697 7.87829 8.14072 8.22930 8.52928 9.04762 9.64702 11.12290 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.015087 B = 0.004495 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.483725 B = 6228.214281 C = 7521.588568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.887 3.113 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.514 4.514 8 H 0.052 0.948 9 C 0.057 3.943 10 H 0.036 0.964 11 C -0.110 4.110 12 C -0.116 4.116 13 C 0.066 3.934 14 N -0.531 5.531 15 C 0.123 3.877 16 C -0.204 4.204 17 C 0.059 3.941 18 N -0.478 5.478 19 H 0.439 0.561 20 N -0.284 5.284 21 C 0.166 3.834 22 C -0.136 4.136 23 C -0.121 4.121 24 C -0.148 4.148 25 C -0.246 4.246 26 S 0.252 5.748 27 C 0.068 3.932 28 H 0.259 0.741 29 H 0.089 0.911 30 H 0.028 0.972 31 H 0.059 0.941 32 H 0.042 0.958 33 H 0.055 0.945 34 H 0.021 0.979 35 H 0.035 0.965 36 H 0.079 0.921 37 H 0.175 0.825 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.161 0.839 41 H 0.018 0.982 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.253 -16.434 -1.845 16.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.205 1.205 7 C -0.553 4.553 8 H 0.071 0.929 9 C 0.039 3.961 10 H 0.054 0.946 11 C -0.148 4.148 12 C -0.154 4.154 13 C -0.062 4.062 14 N -0.255 5.255 15 C -0.006 4.006 16 C -0.216 4.216 17 C -0.088 4.088 18 N -0.186 5.186 19 H 0.282 0.718 20 N -0.109 5.109 21 C -0.001 4.001 22 C -0.255 4.255 23 C -0.154 4.154 24 C -0.178 4.178 25 C -0.383 4.383 26 S 0.519 5.481 27 C -0.059 4.059 28 H 0.069 0.931 29 H 0.108 0.892 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.039 0.961 35 H 0.054 0.946 36 H 0.098 0.902 37 H 0.192 0.808 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.179 0.821 41 H 0.036 0.964 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.019 -15.975 -1.741 16.102 hybrid contribution 1.346 -0.146 0.450 1.427 sum 2.365 -16.121 -1.291 16.345 Atomic orbital electron populations 1.69877 1.05798 1.26334 1.50659 1.24908 0.94768 0.98797 0.95215 0.86739 0.79651 0.83527 0.78523 1.20327 1.21403 1.20457 1.21119 0.92762 0.90712 1.50677 0.92942 1.18638 0.92539 0.90126 0.94825 0.94605 1.21649 1.00017 0.94653 0.98495 1.21662 0.97219 0.96569 0.99979 1.21989 0.95583 0.98654 0.89980 1.61946 1.23791 1.01781 1.38014 1.20370 0.92708 0.87108 1.00423 1.20108 1.09509 1.00037 0.91928 1.22267 0.97143 0.90291 0.99097 1.46106 1.44669 1.20656 1.07160 0.71754 1.77613 1.23836 1.16041 0.93376 1.19550 0.96474 0.92082 0.91957 1.22024 1.12372 0.98088 0.93060 1.20212 1.03783 1.00803 0.90647 1.19895 1.05869 0.92222 0.99857 1.26251 1.09445 1.00726 1.01926 1.85786 1.66915 0.98630 0.96769 1.22326 0.96445 0.88291 0.98796 0.93070 0.89238 0.95300 0.92211 0.93892 0.92620 0.96109 0.94645 0.90240 0.80835 0.84916 0.85015 0.82148 0.96376 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.94 11.35 55.43 0.63 -24.31 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 20.97 29.54 -169.99 -5.02 15.94 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.51 -13.68 8.56 -34.43 -0.29 -13.97 16 8 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 9 C 0.06 1.38 2.27 -91.69 -0.21 1.17 16 10 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 11 C -0.11 -2.54 5.02 -26.61 -0.13 -2.68 16 12 C -0.12 -2.25 6.09 -26.65 -0.16 -2.41 16 13 C 0.07 1.12 5.31 -3.84 -0.02 1.10 16 14 N -0.53 -9.21 3.53 -236.11 -0.83 -10.04 16 15 C 0.12 1.82 4.49 -4.98 -0.02 1.80 16 16 C -0.20 -2.87 4.75 -104.70 -0.50 -3.37 16 17 C 0.06 0.66 11.01 -17.27 -0.19 0.47 16 18 N -0.48 -5.22 7.35 30.41 0.22 -5.00 16 19 H 0.44 3.11 8.96 -182.62 -1.64 1.48 16 20 N -0.28 -4.17 12.75 33.37 0.43 -3.74 16 21 C 0.17 2.56 7.02 -82.87 -0.58 1.98 16 22 C -0.14 -2.09 6.25 -36.86 -0.23 -2.32 16 23 C -0.12 -1.68 10.10 -40.90 -0.41 -2.09 16 24 C -0.15 -1.88 10.16 -41.29 -0.42 -2.30 16 25 C -0.25 -3.32 11.22 29.10 0.33 -2.99 16 26 S 0.25 4.00 21.09 -107.50 -2.27 1.74 16 27 C 0.07 1.37 4.68 -3.83 -0.02 1.35 16 28 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.09 2.34 6.15 -51.93 -0.32 2.02 16 30 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 32 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.87 6.45 -51.93 -0.34 0.54 16 34 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.04 0.49 8.12 -51.93 -0.42 0.06 16 36 H 0.08 1.19 7.72 -51.93 -0.40 0.79 16 37 H 0.17 1.36 8.06 -52.48 -0.42 0.93 16 38 H 0.13 1.69 8.06 -52.49 -0.42 1.26 16 39 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 40 H 0.16 1.84 8.06 -52.49 -0.42 1.42 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 1.21 8.01 -51.93 -0.42 0.79 16 LS Contribution 351.71 15.07 5.30 5.30 Total: -1.00 -29.92 351.71 -11.80 -41.72 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -7.30 Total: 1.01 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -2.96 Total: -22.62 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: 0.45 Total: -43.09 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 4.00 SS G_CDS: -2.27 Total: 1.74 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.92 -11.80 -41.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597173889.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.734 kcal (2) G-P(sol) polarization free energy of solvation -29.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds