Wall clock time and date at job start Tue Mar 31 2020 11:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00115 * 2 1 4 4 H 1.48494 * 109.46970 * 239.99702 * 3 2 1 5 5 H 1.48499 * 109.47039 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47010 * 119.99977 * 3 2 1 7 7 C 1.37883 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99972 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99495 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.50346 * 60.07679 * 9 7 2 11 11 C 1.53121 * 109.50141 * 299.99419 * 9 7 2 12 12 C 1.53117 * 109.15905 * 182.40966 * 11 9 7 13 13 C 1.53036 * 109.27734 * 57.65305 * 12 11 9 14 14 N 1.46841 * 109.52572 * 300.81838 * 13 12 11 15 15 C 1.46904 * 111.00030 * 185.83914 * 14 13 12 16 16 C 1.50695 * 109.46975 * 66.04791 * 15 14 13 17 17 C 1.35039 * 126.08748 * 260.14397 * 16 15 14 18 18 N 1.35054 * 108.02973 * 180.27606 * 17 16 15 19 19 H 0.96994 * 125.91360 * 179.73993 * 18 17 16 20 20 N 1.40075 * 108.17378 * 359.74947 * 18 17 16 21 21 C 1.31770 * 108.08995 * 359.97438 * 20 18 17 22 22 C 1.47918 * 126.06660 * 179.97438 * 21 20 18 23 23 C 1.34743 * 125.26641 * 325.03109 * 22 21 20 24 24 C 1.38024 * 114.69884 * 180.30518 * 23 22 21 25 25 C 1.33569 * 115.05965 * 359.48663 * 24 23 22 26 26 S 1.75861 * 109.76318 * 0.48494 * 25 24 23 27 27 C 1.46850 * 111.19696 * 61.74493 * 14 13 12 28 28 H 0.97001 * 120.00411 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.52149 * 62.50301 * 11 9 7 30 30 H 1.08995 * 109.57411 * 302.34370 * 11 9 7 31 31 H 1.09007 * 109.49909 * 297.71182 * 12 11 9 32 32 H 1.08998 * 109.50068 * 177.59793 * 12 11 9 33 33 H 1.09004 * 109.45901 * 180.80184 * 13 12 11 34 34 H 1.09004 * 109.46459 * 60.84248 * 13 12 11 35 35 H 1.08997 * 109.46812 * 306.05064 * 15 14 13 36 36 H 1.09001 * 109.47183 * 186.04930 * 15 14 13 37 37 H 1.08007 * 125.98276 * 0.05807 * 17 16 15 38 38 H 1.08002 * 122.64660 * 0.02926 * 23 22 21 39 39 H 1.08002 * 122.46576 * 179.70871 * 24 23 22 40 40 H 1.08002 * 125.12091 * 180.20697 * 25 24 23 41 41 H 1.09003 * 109.46014 * 58.27039 * 27 14 13 42 42 H 1.09001 * 109.46461 * 178.23858 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6255 -2.5582 -0.8902 11 6 0.3700 -2.5808 1.2503 12 6 -0.3457 -3.9342 1.2731 13 6 0.6944 -5.0563 1.2417 14 7 1.5110 -4.9348 0.0274 15 6 2.4286 -6.0742 -0.1063 16 6 1.6344 -7.3347 -0.3330 17 6 1.3276 -8.2603 0.6012 18 7 0.6131 -9.2375 0.0025 19 1 0.2626 -10.0321 0.4344 20 7 0.4659 -8.9049 -1.3502 21 6 1.0767 -7.7559 -1.5579 22 6 1.1676 -7.0388 -2.8484 23 6 1.2726 -7.6236 -4.0577 24 6 1.3495 -6.7444 -5.1189 25 6 1.2974 -5.4515 -4.7872 26 16 1.1563 -5.2906 -3.0417 27 6 2.2448 -3.6629 0.0060 28 1 -0.4851 0.8400 -0.0004 29 1 -0.3679 -1.7788 1.2287 30 1 0.9900 -2.4815 2.1412 31 1 -0.9963 -4.0165 0.4024 32 1 -0.9414 -4.0154 2.1823 33 1 0.1876 -6.0214 1.2436 34 1 1.3359 -4.9816 2.1199 35 1 3.0178 -6.1750 0.8051 36 1 3.0945 -5.9071 -0.9529 37 1 1.6078 -8.2268 1.6438 38 1 1.2992 -8.6957 -4.1861 39 1 1.4412 -7.0773 -6.1422 40 1 1.3404 -4.6288 -5.4855 41 1 2.8790 -3.5947 0.8899 42 1 2.8641 -3.6159 -0.8897 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597173889.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:20 Heat of formation + Delta-G solvation = 89.980966 kcal Electronic energy + Delta-G solvation = -24470.681146 eV Core-core repulsion = 21156.875821 eV Total energy + Delta-G solvation = -3313.805325 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.15929 -39.58531 -38.40690 -35.72854 -33.91404 -33.07466 -31.73667 -31.00025 -29.57960 -26.83876 -26.74063 -25.35586 -23.50479 -22.99248 -22.45102 -21.00018 -20.23387 -19.64822 -18.74406 -18.23410 -17.66674 -16.74190 -16.41435 -16.23746 -15.75793 -15.31482 -15.24471 -14.83499 -14.67718 -14.33269 -14.05031 -13.86875 -13.71070 -13.51636 -13.33906 -13.18038 -12.99563 -12.79178 -12.68416 -12.48599 -12.28863 -11.80847 -11.69351 -11.62133 -11.29957 -11.25990 -10.82848 -10.75676 -10.57078 -10.29867 -9.65141 -9.23680 -9.17037 -8.91962 -8.00718 -6.13895 -0.07702 0.72537 1.07005 1.32408 1.45192 1.45840 1.53143 1.65463 2.04069 2.19345 2.48170 3.26501 3.34558 3.61365 3.91753 4.15038 4.31111 4.32226 4.36719 4.43854 4.51075 4.69774 4.71822 4.72664 4.78753 4.83236 4.88147 5.00220 5.08814 5.09922 5.21974 5.24927 5.30032 5.36300 5.48823 5.58914 5.61792 5.66402 5.71053 6.08574 6.23702 6.32233 6.44061 6.47663 6.57665 6.67845 6.99935 7.53565 9.03289 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.015087 B = 0.004495 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.483725 B = 6228.214281 C = 7521.588568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.017 3.983 3 Si 0.948 3.052 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.531 4.531 8 H 0.051 0.949 9 C 0.058 3.942 10 H -0.001 1.001 11 C -0.102 4.102 12 C -0.109 4.109 13 C 0.073 3.927 14 N -0.536 5.536 15 C 0.131 3.869 16 C -0.232 4.232 17 C 0.085 3.915 18 N -0.460 5.460 19 H 0.456 0.544 20 N -0.310 5.310 21 C 0.146 3.854 22 C -0.142 4.142 23 C -0.121 4.121 24 C -0.141 4.141 25 C -0.243 4.243 26 S 0.181 5.819 27 C 0.086 3.914 28 H 0.258 0.742 29 H 0.053 0.947 30 H 0.023 0.977 31 H 0.041 0.959 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.032 0.968 35 H 0.054 0.946 36 H 0.070 0.930 37 H 0.216 0.784 38 H 0.145 0.855 39 H 0.163 0.837 40 H 0.178 0.822 41 H 0.016 0.984 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.125 -18.444 -1.165 18.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.182 4.182 3 Si 0.774 3.226 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.570 4.570 8 H 0.070 0.930 9 C 0.039 3.961 10 H 0.017 0.983 11 C -0.141 4.141 12 C -0.147 4.147 13 C -0.055 4.055 14 N -0.261 5.261 15 C 0.002 3.998 16 C -0.245 4.245 17 C -0.064 4.064 18 N -0.170 5.170 19 H 0.304 0.696 20 N -0.136 5.136 21 C -0.020 4.020 22 C -0.262 4.262 23 C -0.155 4.155 24 C -0.171 4.171 25 C -0.380 4.380 26 S 0.447 5.553 27 C -0.041 4.041 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.042 0.958 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.232 0.768 38 H 0.163 0.837 39 H 0.181 0.819 40 H 0.196 0.804 41 H 0.034 0.966 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.890 -18.027 -1.068 18.157 hybrid contribution 1.045 0.380 0.210 1.132 sum 2.936 -17.647 -0.859 17.910 Atomic orbital electron populations 1.70034 1.07118 1.26851 1.51509 1.25646 0.95514 1.02013 0.95036 0.85779 0.78472 0.79622 0.78759 1.19739 1.21284 1.19749 1.21517 0.92962 0.92211 1.50308 0.93049 1.18523 0.92861 0.91083 0.93589 0.98278 1.21447 0.99068 0.95908 0.97633 1.21556 0.97621 0.95349 1.00173 1.21924 0.95026 0.98345 0.90158 1.61839 1.24348 1.01431 1.38450 1.20273 0.92317 0.86347 1.00830 1.20103 1.11233 1.00694 0.92430 1.22789 0.94773 0.88651 1.00166 1.46150 1.43641 1.21122 1.06092 0.69616 1.77543 1.24554 1.16102 0.95405 1.19702 0.97235 0.92597 0.92441 1.22124 1.12906 0.97132 0.94029 1.20495 1.02907 1.01581 0.90534 1.20220 1.04271 0.91582 1.01053 1.26408 1.09554 1.01795 1.00250 1.85973 1.68874 1.00613 0.99879 1.21934 0.95197 0.88553 0.98443 0.93294 0.92793 0.95846 0.94000 0.91829 0.90447 0.94989 0.92836 0.91172 0.76768 0.83705 0.81914 0.80436 0.96592 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.24 11.35 21.45 0.24 -52.99 16 2 C 0.02 0.91 5.30 84.66 0.45 1.36 16 3 Si 0.95 43.62 29.54 68.60 2.03 45.64 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 7 C -0.53 -29.06 8.56 25.60 0.22 -28.84 16 8 H 0.05 2.75 7.74 -2.91 -0.02 2.72 16 9 C 0.06 2.90 2.27 -11.49 -0.03 2.88 16 10 H 0.00 -0.06 8.14 -2.39 -0.02 -0.07 16 11 C -0.10 -4.86 5.02 30.67 0.15 -4.71 16 12 C -0.11 -4.20 6.09 30.65 0.19 -4.01 16 13 C 0.07 2.35 5.31 86.33 0.46 2.81 16 14 N -0.54 -18.34 3.53 -900.92 -3.18 -21.51 16 15 C 0.13 3.68 4.49 85.55 0.38 4.07 16 16 C -0.23 -6.06 4.75 -19.92 -0.09 -6.16 16 17 C 0.08 1.56 11.01 83.46 0.92 2.48 16 18 N -0.46 -8.57 7.35 -57.69 -0.42 -9.00 16 19 H 0.46 4.83 8.96 -213.34 -1.91 2.92 16 20 N -0.31 -8.55 12.75 -48.34 -0.62 -9.17 16 21 C 0.15 4.33 7.02 42.40 0.30 4.63 16 22 C -0.14 -4.37 6.25 24.03 0.15 -4.22 16 23 C -0.12 -3.25 10.10 21.42 0.22 -3.04 16 24 C -0.14 -3.39 10.16 21.16 0.22 -3.17 16 25 C -0.24 -6.47 11.22 66.76 0.75 -5.72 16 26 S 0.18 5.93 21.09 -56.49 -1.19 4.73 16 27 C 0.09 3.51 4.68 86.32 0.40 3.91 16 28 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 29 H 0.05 2.94 6.15 -2.39 -0.01 2.92 16 30 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.04 1.74 8.14 -2.38 -0.02 1.73 16 32 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.08 2.19 6.45 -2.38 -0.02 2.17 16 34 H 0.03 0.97 8.14 -2.38 -0.02 0.96 16 35 H 0.05 1.31 8.12 -2.39 -0.02 1.29 16 36 H 0.07 2.09 7.72 -2.39 -0.02 2.08 16 37 H 0.22 2.12 8.06 -2.91 -0.02 2.09 16 38 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 39 H 0.16 2.85 8.06 -2.91 -0.02 2.83 16 40 H 0.18 3.96 8.06 -2.91 -0.02 3.94 16 41 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.06 2.33 8.01 -2.39 -0.02 2.31 16 Total: -1.00 -67.20 351.71 0.66 -66.54 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -0.88 Total: 13.48 kcal Atomic # 6 Polarization: -42.41 SS G_CDS: 4.68 Total: -37.73 kcal Atomic # 7 Polarization: -88.69 SS G_CDS: -3.97 Total: -92.67 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: 5.93 SS G_CDS: -1.19 Total: 4.73 kcal Total: -67.20 0.66 -66.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597173889.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.518 kcal (2) G-P(sol) polarization free energy of solvation -67.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds