Wall clock time and date at job start Tue Mar 31 2020 11:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86809 * 119.99857 * 2 1 4 4 H 1.48497 * 109.47312 * 240.00360 * 3 2 1 5 5 H 1.48497 * 109.46778 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46923 * 119.99957 * 3 2 1 7 7 C 1.37872 * 120.00386 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00203 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99953 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.53160 * 300.10371 * 9 7 2 11 11 C 1.53116 * 109.49717 * 60.19866 * 9 7 2 12 12 C 1.53128 * 109.15648 * 177.59759 * 11 9 7 13 13 C 1.53043 * 109.27523 * 302.34432 * 12 11 9 14 14 N 1.46841 * 109.52283 * 59.18094 * 13 12 11 15 15 C 1.46903 * 111.00065 * 174.15990 * 14 13 12 16 16 C 1.50704 * 109.47081 * 288.91513 * 15 14 13 17 17 C 1.35098 * 126.07888 * 105.71409 * 16 15 14 18 18 N 1.35020 * 107.97692 * 180.26292 * 17 16 15 19 19 H 0.97000 * 125.93679 * 179.70841 * 18 17 16 20 20 N 1.40071 * 108.13888 * 359.72295 * 18 17 16 21 21 C 1.31601 * 108.11295 * 0.02562 * 20 18 17 22 22 C 1.48458 * 126.04154 * 179.97438 * 21 20 18 23 23 C 1.39334 * 122.75414 * 318.04216 * 22 21 20 24 24 C 1.33089 * 114.91016 * 179.97438 * 23 22 21 25 25 S 1.75821 * 109.91284 * 359.97438 * 24 23 22 26 26 C 1.34506 * 122.76027 * 137.99404 * 22 21 20 27 27 C 1.46848 * 111.19666 * 298.25519 * 14 13 12 28 28 H 0.97003 * 120.00295 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.52676 * 297.49351 * 11 9 7 30 30 H 1.09005 * 109.52660 * 57.63212 * 11 9 7 31 31 H 1.08992 * 109.50395 * 62.28295 * 12 11 9 32 32 H 1.08998 * 109.50126 * 182.36894 * 12 11 9 33 33 H 1.09000 * 109.46144 * 299.16259 * 13 12 11 34 34 H 1.08998 * 109.46064 * 179.19680 * 13 12 11 35 35 H 1.08996 * 109.47391 * 168.91671 * 15 14 13 36 36 H 1.09005 * 109.46972 * 48.91401 * 15 14 13 37 37 H 1.08008 * 126.01367 * 359.96325 * 17 16 15 38 38 H 1.07997 * 122.54536 * 359.68963 * 23 22 21 39 39 H 1.08000 * 125.04293 * 179.97438 * 24 23 22 40 40 H 1.07999 * 125.22893 * 0.06872 * 26 22 21 41 41 H 1.09009 * 109.46149 * 181.76037 * 27 14 13 42 42 H 1.08996 * 109.46661 * 301.72254 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6230 -2.5574 0.8884 11 6 0.3738 -2.5828 -1.2527 12 6 -0.3418 -3.9364 -1.2753 13 6 0.6983 -5.0585 -1.2390 14 7 1.5113 -4.9347 -0.0225 15 6 2.4286 -6.0739 0.1159 16 6 1.6431 -7.3117 0.4650 17 6 1.3647 -8.3385 -0.3677 18 7 0.6385 -9.2466 0.3187 19 1 0.2959 -10.0838 -0.0315 20 7 0.4654 -8.7696 1.6243 21 6 1.0717 -7.6054 1.7183 22 6 1.1366 -6.7497 2.9298 23 6 0.0413 -6.5419 3.7656 24 6 0.2741 -5.7473 4.8075 25 16 1.9460 -5.2038 4.7845 26 6 2.2578 -6.1121 3.3112 27 6 2.2449 -3.6628 -0.0012 28 1 -0.4851 0.8400 0.0004 29 1 -0.3642 -1.7810 -1.2347 30 1 0.9972 -2.4844 -2.1415 31 1 -0.9949 -4.0173 -0.4065 32 1 -0.9354 -4.0190 -2.1858 33 1 1.3424 -4.9852 -2.1153 34 1 0.1916 -6.0235 -1.2406 35 1 3.1494 -5.8660 0.9066 36 1 2.9563 -6.2317 -0.8247 37 1 1.6657 -8.4169 -1.4020 38 1 -0.9244 -6.9880 3.5794 39 1 -0.4558 -5.4765 5.5561 40 1 3.2042 -6.1515 2.7923 41 1 2.8617 -3.6142 0.8963 42 1 2.8818 -3.5961 -0.8832 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597175490.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:02 Heat of formation + Delta-G solvation = 107.914689 kcal Electronic energy + Delta-G solvation = -24508.977387 eV Core-core repulsion = 21195.949726 eV Total energy + Delta-G solvation = -3313.027660 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.18506 -38.00875 -37.49106 -33.98320 -32.19461 -31.44058 -30.18414 -29.56684 -28.93692 -25.51276 -24.84391 -24.19300 -21.97437 -21.58357 -21.29998 -19.86938 -18.49328 -18.40257 -17.57698 -17.23437 -16.27397 -15.21753 -15.05118 -14.62836 -14.32183 -14.08337 -13.86281 -13.54813 -13.16436 -12.88505 -12.72032 -12.60134 -12.30275 -12.21665 -12.19287 -12.00640 -11.60868 -11.14557 -10.88958 -10.69643 -10.61901 -10.60630 -10.52235 -10.04539 -9.76525 -9.68106 -9.39348 -9.00900 -8.63797 -8.58933 -8.42940 -8.23600 -7.97385 -7.50137 -5.91029 -3.96988 1.15118 1.86160 1.88847 2.17025 2.52232 2.91351 3.33850 3.35789 3.40554 3.42872 4.46648 4.67399 4.72045 4.95920 5.15580 5.33615 5.35728 5.39001 5.58445 5.70552 5.76917 5.83727 5.91242 5.98008 6.12938 6.17818 6.20948 6.35340 6.48715 6.52604 6.57598 6.59690 6.69564 6.80808 6.83310 7.05723 7.27642 7.30820 7.48557 7.70039 7.78774 7.82633 7.94080 8.17382 8.25572 8.55556 9.07125 9.66882 11.14860 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.012928 B = 0.004581 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.358245 B = 6110.982560 C = 7502.214473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.513 4.513 8 H 0.052 0.948 9 C 0.057 3.943 10 H 0.034 0.966 11 C -0.109 4.109 12 C -0.116 4.116 13 C 0.068 3.932 14 N -0.527 5.527 15 C 0.128 3.872 16 C -0.200 4.200 17 C 0.054 3.946 18 N -0.480 5.480 19 H 0.438 0.562 20 N -0.290 5.290 21 C 0.159 3.841 22 C -0.017 4.017 23 C -0.109 4.109 24 C -0.217 4.217 25 S 0.114 5.886 26 C -0.181 4.181 27 C 0.070 3.930 28 H 0.259 0.741 29 H 0.089 0.911 30 H 0.028 0.972 31 H 0.058 0.942 32 H 0.042 0.958 33 H 0.019 0.981 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.032 0.968 37 H 0.173 0.827 38 H 0.138 0.862 39 H 0.163 0.837 40 H 0.164 0.836 41 H 0.057 0.943 42 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.342 -16.928 2.829 17.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.552 4.552 8 H 0.070 0.930 9 C 0.039 3.961 10 H 0.052 0.948 11 C -0.148 4.148 12 C -0.154 4.154 13 C -0.060 4.060 14 N -0.251 5.251 15 C -0.001 4.001 16 C -0.212 4.212 17 C -0.093 4.093 18 N -0.188 5.188 19 H 0.281 0.719 20 N -0.113 5.113 21 C -0.009 4.009 22 C -0.032 4.032 23 C -0.140 4.140 24 C -0.352 4.352 25 S 0.377 5.623 26 C -0.319 4.319 27 C -0.057 4.057 28 H 0.069 0.931 29 H 0.107 0.893 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.037 0.963 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.050 0.950 37 H 0.190 0.810 38 H 0.155 0.845 39 H 0.181 0.819 40 H 0.181 0.819 41 H 0.076 0.924 42 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 2.059 -16.730 4.774 17.519 hybrid contribution 0.349 0.219 -2.515 2.549 sum 2.408 -16.511 2.259 16.838 Atomic orbital electron populations 1.69885 1.05818 1.26298 1.50711 1.24912 0.94772 0.98809 0.95225 0.86732 0.79648 0.83509 0.78514 1.20456 1.21388 1.20303 1.21113 0.92719 0.90736 1.50622 0.92988 1.18625 0.92588 0.90171 0.94757 0.94769 1.21642 0.99978 0.94654 0.98478 1.21655 0.97248 0.96596 0.99891 1.21961 0.95592 0.98527 0.89930 1.61924 1.23911 1.01563 1.37744 1.20323 0.92759 0.87688 0.99316 1.20073 1.09569 0.98563 0.92957 1.22271 0.97536 0.91003 0.98513 1.46091 1.44237 1.19659 1.08845 0.71899 1.77528 1.24234 1.12927 0.96637 1.20098 0.96119 0.91681 0.93017 1.16591 0.93253 0.99443 0.93899 1.20002 0.99577 1.00173 0.94249 1.25368 0.99833 1.05499 1.04526 1.84196 1.06195 1.49170 1.22702 1.25581 1.02423 1.02799 1.01059 1.22291 0.96357 0.88559 0.98463 0.93094 0.89301 0.95313 0.92279 0.93919 0.96291 0.92742 0.90690 0.94999 0.81009 0.84459 0.81935 0.81865 0.92415 0.96569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.50 11.36 55.43 0.63 -24.87 16 2 C 0.06 1.77 5.31 -17.82 -0.09 1.68 16 3 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.51 -14.03 8.56 -34.44 -0.29 -14.33 16 8 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 9 C 0.06 1.44 2.26 -91.69 -0.21 1.23 16 10 H 0.03 0.97 8.14 -51.93 -0.42 0.54 16 11 C -0.11 -2.61 5.03 -26.61 -0.13 -2.75 16 12 C -0.12 -2.33 6.09 -26.64 -0.16 -2.49 16 13 C 0.07 1.21 5.30 -3.83 -0.02 1.19 16 14 N -0.53 -9.62 4.61 -236.11 -1.09 -10.71 16 15 C 0.13 1.91 4.98 -4.97 -0.02 1.89 16 16 C -0.20 -2.81 4.78 -104.75 -0.50 -3.31 16 17 C 0.05 0.60 11.44 -17.27 -0.20 0.40 16 18 N -0.48 -5.24 7.35 30.42 0.22 -5.02 16 19 H 0.44 3.13 8.96 -182.62 -1.64 1.49 16 20 N -0.29 -4.21 12.74 33.43 0.43 -3.78 16 21 C 0.16 2.42 6.83 -82.77 -0.57 1.86 16 22 C -0.02 -0.26 5.65 -106.60 -0.60 -0.87 16 23 C -0.11 -1.59 10.01 -40.96 -0.41 -2.00 16 24 C -0.22 -2.86 11.19 28.94 0.32 -2.54 16 25 S 0.11 1.50 23.33 -107.50 -2.51 -1.00 16 26 C -0.18 -2.56 10.15 29.41 0.30 -2.26 16 27 C 0.07 1.47 4.67 -3.84 -0.02 1.45 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.09 2.38 6.16 -51.93 -0.32 2.06 16 30 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.05 0.89 6.97 -51.93 -0.36 0.53 16 35 H 0.07 1.08 5.81 -51.93 -0.30 0.78 16 36 H 0.03 0.44 8.05 -51.93 -0.42 0.02 16 37 H 0.17 1.34 8.06 -52.48 -0.42 0.92 16 38 H 0.14 1.90 8.06 -52.49 -0.42 1.48 16 39 H 0.16 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.16 2.09 6.55 -52.49 -0.34 1.74 16 41 H 0.06 1.20 7.96 -51.92 -0.41 0.78 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 352.03 15.07 5.31 5.31 Total: -1.00 -31.02 352.03 -11.78 -42.80 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -7.14 Total: 1.85 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: -2.61 Total: -20.85 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: 0.19 Total: -44.38 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -2.51 Total: -1.00 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.02 -11.78 -42.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597175490.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.719 kcal (2) G-P(sol) polarization free energy of solvation -31.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds