Wall clock time and date at job start Tue Mar 31 2020 11:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86809 * 119.99857 * 2 1 4 4 H 1.48497 * 109.47312 * 240.00360 * 3 2 1 5 5 H 1.48497 * 109.46778 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46923 * 119.99957 * 3 2 1 7 7 C 1.37872 * 120.00386 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00203 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99953 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.53160 * 300.10371 * 9 7 2 11 11 C 1.53116 * 109.49717 * 60.19866 * 9 7 2 12 12 C 1.53128 * 109.15648 * 177.59759 * 11 9 7 13 13 C 1.53043 * 109.27523 * 302.34432 * 12 11 9 14 14 N 1.46841 * 109.52283 * 59.18094 * 13 12 11 15 15 C 1.46903 * 111.00065 * 174.15990 * 14 13 12 16 16 C 1.50704 * 109.47081 * 288.91513 * 15 14 13 17 17 C 1.35098 * 126.07888 * 105.71409 * 16 15 14 18 18 N 1.35020 * 107.97692 * 180.26292 * 17 16 15 19 19 H 0.97000 * 125.93679 * 179.70841 * 18 17 16 20 20 N 1.40071 * 108.13888 * 359.72295 * 18 17 16 21 21 C 1.31601 * 108.11295 * 0.02562 * 20 18 17 22 22 C 1.48458 * 126.04154 * 179.97438 * 21 20 18 23 23 C 1.39334 * 122.75414 * 318.04216 * 22 21 20 24 24 C 1.33089 * 114.91016 * 179.97438 * 23 22 21 25 25 S 1.75821 * 109.91284 * 359.97438 * 24 23 22 26 26 C 1.34506 * 122.76027 * 137.99404 * 22 21 20 27 27 C 1.46848 * 111.19666 * 298.25519 * 14 13 12 28 28 H 0.97003 * 120.00295 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.52676 * 297.49351 * 11 9 7 30 30 H 1.09005 * 109.52660 * 57.63212 * 11 9 7 31 31 H 1.08992 * 109.50395 * 62.28295 * 12 11 9 32 32 H 1.08998 * 109.50126 * 182.36894 * 12 11 9 33 33 H 1.09000 * 109.46144 * 299.16259 * 13 12 11 34 34 H 1.08998 * 109.46064 * 179.19680 * 13 12 11 35 35 H 1.08996 * 109.47391 * 168.91671 * 15 14 13 36 36 H 1.09005 * 109.46972 * 48.91401 * 15 14 13 37 37 H 1.08008 * 126.01367 * 359.96325 * 17 16 15 38 38 H 1.07997 * 122.54536 * 359.68963 * 23 22 21 39 39 H 1.08000 * 125.04293 * 179.97438 * 24 23 22 40 40 H 1.07999 * 125.22893 * 0.06872 * 26 22 21 41 41 H 1.09009 * 109.46149 * 181.76037 * 27 14 13 42 42 H 1.08996 * 109.46661 * 301.72254 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6230 -2.5574 0.8884 11 6 0.3738 -2.5828 -1.2527 12 6 -0.3418 -3.9364 -1.2753 13 6 0.6983 -5.0585 -1.2390 14 7 1.5113 -4.9347 -0.0225 15 6 2.4286 -6.0739 0.1159 16 6 1.6431 -7.3117 0.4650 17 6 1.3647 -8.3385 -0.3677 18 7 0.6385 -9.2466 0.3187 19 1 0.2959 -10.0838 -0.0315 20 7 0.4654 -8.7696 1.6243 21 6 1.0717 -7.6054 1.7183 22 6 1.1366 -6.7497 2.9298 23 6 0.0413 -6.5419 3.7656 24 6 0.2741 -5.7473 4.8075 25 16 1.9460 -5.2038 4.7845 26 6 2.2578 -6.1121 3.3112 27 6 2.2449 -3.6628 -0.0012 28 1 -0.4851 0.8400 0.0004 29 1 -0.3642 -1.7810 -1.2347 30 1 0.9972 -2.4844 -2.1415 31 1 -0.9949 -4.0173 -0.4065 32 1 -0.9354 -4.0190 -2.1858 33 1 1.3424 -4.9852 -2.1153 34 1 0.1916 -6.0235 -1.2406 35 1 3.1494 -5.8660 0.9066 36 1 2.9563 -6.2317 -0.8247 37 1 1.6657 -8.4169 -1.4020 38 1 -0.9244 -6.9880 3.5794 39 1 -0.4558 -5.4765 5.5561 40 1 3.2042 -6.1515 2.7923 41 1 2.8617 -3.6142 0.8963 42 1 2.8818 -3.5961 -0.8832 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597175490.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:02 Heat of formation + Delta-G solvation = 89.079543 kcal Electronic energy + Delta-G solvation = -24509.794140 eV Core-core repulsion = 21195.949726 eV Total energy + Delta-G solvation = -3313.844414 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.16337 -39.57738 -38.54904 -35.70978 -33.85220 -32.54744 -31.71859 -31.05991 -30.00989 -26.84290 -26.75936 -25.26016 -23.50501 -22.99884 -22.64131 -20.88078 -20.25592 -19.47926 -18.64538 -18.27350 -18.19559 -16.72361 -16.36470 -16.15874 -15.66807 -15.29109 -15.22250 -14.86354 -14.65351 -14.34550 -14.00133 -13.92266 -13.76669 -13.54311 -13.39333 -13.24835 -13.16319 -12.79494 -12.66809 -12.49906 -12.22890 -11.81418 -11.72487 -11.64088 -11.58186 -11.31112 -10.82972 -10.65056 -10.60258 -10.31996 -9.64058 -9.47513 -9.04851 -8.88614 -8.02357 -6.16245 0.08139 0.81218 0.92329 1.12146 1.44089 1.45523 1.47980 1.52877 2.07495 2.26546 2.47138 3.24707 3.34993 3.73662 3.99523 4.12909 4.23664 4.30910 4.35050 4.40254 4.49619 4.63727 4.65155 4.69340 4.79810 4.84328 4.88503 4.97557 5.06639 5.11077 5.11958 5.21211 5.27492 5.45386 5.46528 5.51534 5.59188 5.64876 5.68699 6.05470 6.21168 6.30719 6.50559 6.52367 6.56244 6.75958 6.97515 7.51515 9.02005 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.012928 B = 0.004581 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.358245 B = 6110.982560 C = 7502.214473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.015 3.985 3 Si 0.950 3.050 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.532 4.532 8 H 0.052 0.948 9 C 0.057 3.943 10 H -0.010 1.010 11 C -0.102 4.102 12 C -0.109 4.109 13 C 0.075 3.925 14 N -0.539 5.539 15 C 0.133 3.867 16 C -0.229 4.229 17 C 0.080 3.920 18 N -0.464 5.464 19 H 0.455 0.545 20 N -0.318 5.318 21 C 0.141 3.859 22 C -0.033 4.033 23 C -0.130 4.130 24 C -0.216 4.216 25 S 0.119 5.881 26 C -0.191 4.191 27 C 0.087 3.913 28 H 0.258 0.742 29 H 0.053 0.947 30 H 0.024 0.976 31 H 0.039 0.961 32 H 0.064 0.936 33 H 0.031 0.969 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.052 0.948 37 H 0.214 0.786 38 H 0.138 0.862 39 H 0.186 0.814 40 H 0.173 0.827 41 H 0.054 0.946 42 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.304 -18.358 1.568 18.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.184 4.184 3 Si 0.776 3.224 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.571 4.571 8 H 0.071 0.929 9 C 0.038 3.962 10 H 0.008 0.992 11 C -0.140 4.140 12 C -0.147 4.147 13 C -0.052 4.052 14 N -0.263 5.263 15 C 0.005 3.995 16 C -0.241 4.241 17 C -0.069 4.069 18 N -0.174 5.174 19 H 0.302 0.698 20 N -0.142 5.142 21 C -0.026 4.026 22 C -0.048 4.048 23 C -0.161 4.161 24 C -0.351 4.351 25 S 0.383 5.617 26 C -0.329 4.329 27 C -0.041 4.041 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.043 0.957 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.049 0.951 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.231 0.769 38 H 0.156 0.844 39 H 0.203 0.797 40 H 0.190 0.810 41 H 0.073 0.927 42 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 3.022 -18.200 3.518 18.781 hybrid contribution 0.008 0.602 -2.119 2.203 sum 3.030 -17.597 1.399 17.911 Atomic orbital electron populations 1.70046 1.07233 1.26923 1.51454 1.25691 0.95552 1.02204 0.94924 0.85734 0.78450 0.79353 0.78842 1.19591 1.21207 1.19647 1.21506 0.92978 0.92142 1.50449 0.92930 1.18522 0.92921 0.91416 0.93317 0.99150 1.21440 0.99032 0.95929 0.97591 1.21557 0.97664 0.95414 1.00079 1.21892 0.95014 0.98218 0.90108 1.61827 1.24728 1.01453 1.38317 1.20288 0.92302 0.86614 1.00263 1.20052 1.11365 0.99369 0.93281 1.22805 0.95145 0.89360 0.99557 1.46141 1.43270 1.20183 1.07786 0.69833 1.77470 1.25041 1.13116 0.98598 1.20222 0.96812 0.92044 0.93501 1.16837 0.93593 0.99872 0.94465 1.20150 0.99777 1.01147 0.94993 1.25697 1.00246 1.04603 1.04554 1.84116 1.06277 1.48959 1.22376 1.25754 1.02739 1.02932 1.01489 1.21917 0.95103 0.88772 0.98307 0.93259 0.92855 0.95686 0.94252 0.91724 0.95125 0.90479 0.90830 0.92975 0.76904 0.84432 0.79724 0.80994 0.92738 0.96482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.16 11.36 21.44 0.24 -53.92 16 2 C 0.01 0.83 5.31 84.65 0.45 1.28 16 3 Si 0.95 44.00 29.54 68.60 2.03 46.03 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.53 -29.63 8.56 25.60 0.22 -29.41 16 8 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 9 C 0.06 2.93 2.26 -11.49 -0.03 2.91 16 10 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 11 C -0.10 -4.95 5.03 30.68 0.15 -4.79 16 12 C -0.11 -4.33 6.09 30.65 0.19 -4.14 16 13 C 0.08 2.50 5.30 86.33 0.46 2.96 16 14 N -0.54 -18.99 4.61 -900.92 -4.15 -23.14 16 15 C 0.13 3.68 4.98 85.56 0.43 4.10 16 16 C -0.23 -5.86 4.78 -19.95 -0.10 -5.95 16 17 C 0.08 1.45 11.44 83.48 0.96 2.41 16 18 N -0.46 -8.69 7.35 -57.67 -0.42 -9.11 16 19 H 0.45 4.94 8.96 -213.34 -1.91 3.03 16 20 N -0.32 -8.77 12.74 -48.14 -0.61 -9.38 16 21 C 0.14 4.16 6.83 42.54 0.29 4.45 16 22 C -0.03 -1.01 5.65 -21.14 -0.12 -1.13 16 23 C -0.13 -3.83 10.01 21.38 0.21 -3.62 16 24 C -0.22 -5.68 11.19 66.66 0.75 -4.94 16 25 S 0.12 3.15 23.33 -56.49 -1.32 1.84 16 26 C -0.19 -5.44 10.15 66.97 0.68 -4.76 16 27 C 0.09 3.61 4.67 86.32 0.40 4.01 16 28 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 29 H 0.05 2.96 6.16 -2.39 -0.01 2.95 16 30 H 0.02 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.08 2.24 6.97 -2.39 -0.02 2.23 16 35 H 0.07 2.02 5.81 -2.39 -0.01 2.01 16 36 H 0.05 1.24 8.05 -2.38 -0.02 1.22 16 37 H 0.21 2.04 8.06 -2.91 -0.02 2.01 16 38 H 0.14 3.91 8.06 -2.91 -0.02 3.88 16 39 H 0.19 3.82 8.06 -2.91 -0.02 3.80 16 40 H 0.17 4.39 6.55 -2.91 -0.02 4.37 16 41 H 0.05 2.27 7.96 -2.38 -0.02 2.25 16 42 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -68.93 352.03 -0.17 -69.10 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -0.87 Total: 15.21 kcal Atomic # 6 Polarization: -41.56 SS G_CDS: 4.94 Total: -36.62 kcal Atomic # 7 Polarization: -90.60 SS G_CDS: -4.94 Total: -95.55 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: 3.15 SS G_CDS: -1.32 Total: 1.84 kcal Total: -68.93 -0.17 -69.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597175490.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.182 kcal (2) G-P(sol) polarization free energy of solvation -68.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds