Wall clock time and date at job start Tue Mar 31 2020 10:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86805 * 119.99763 * 2 1 4 4 H 1.48502 * 109.47036 * 262.69046 * 3 2 1 5 5 H 1.48501 * 109.47365 * 22.68656 * 3 2 1 6 6 H 1.48497 * 109.47250 * 142.69007 * 3 2 1 7 7 C 1.39935 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99752 * 305.63693 * 7 2 1 9 9 C 1.41429 * 120.00467 * 125.63771 * 7 2 1 10 10 C 1.40786 * 120.17736 * 288.45700 * 9 7 2 11 11 C 1.37711 * 120.04226 * 180.02562 * 10 9 7 12 12 C 1.38373 * 120.41175 * 359.95668 * 11 10 9 13 13 C 1.39884 * 120.35799 * 0.02562 * 12 11 10 14 14 C 1.47887 * 120.02579 * 180.02562 * 13 12 11 15 15 O 1.21542 * 119.99922 * 218.47713 * 14 13 12 16 16 N 1.34773 * 120.00014 * 38.47587 * 14 13 12 17 17 C 1.50173 * 120.53550 * 9.16683 * 16 14 13 18 18 C 1.46236 * 107.53158 * 109.56762 * 17 16 14 19 19 C 1.52526 * 114.27829 * 58.40831 * 18 17 16 20 20 C 1.50128 * 105.41563 * 270.59450 * 19 18 17 21 21 C 1.54838 * 110.82236 * 97.68032 * 20 19 18 22 22 C 1.43432 * 120.53581 * 189.14366 * 16 14 13 23 23 H 1.09002 * 108.15746 * 149.87510 * 22 16 14 24 24 C 1.50695 * 108.00184 * 33.18465 * 22 16 14 25 25 O 1.20831 * 119.99698 * 16.46761 * 24 22 16 26 26 O 1.34222 * 120.00278 * 196.47276 * 24 22 16 27 27 C 1.39033 * 119.94438 * 0.27455 * 13 12 11 28 28 H 0.97000 * 120.00223 * 0.02562 * 1 2 3 29 29 H 1.08004 * 119.97883 * 0.02562 * 10 9 7 30 30 H 1.07995 * 119.79782 * 179.97438 * 11 10 9 31 31 H 1.07995 * 119.82272 * 180.02562 * 12 11 10 32 32 H 1.08995 * 109.84669 * 350.05527 * 17 16 14 33 33 H 1.09004 * 109.84193 * 229.07146 * 17 16 14 34 34 H 1.08997 * 108.52374 * 179.64884 * 18 17 16 35 35 H 1.08993 * 108.52290 * 297.32331 * 18 17 16 36 36 H 1.08996 * 110.24976 * 29.56502 * 19 18 17 37 37 H 1.09001 * 110.25487 * 151.47578 * 19 18 17 38 38 H 1.09000 * 109.21064 * 218.03141 * 20 19 18 39 39 H 1.09010 * 109.20660 * 337.38257 * 20 19 18 40 40 H 1.08998 * 109.35582 * 81.33657 * 21 20 19 41 41 H 1.08998 * 109.36644 * 200.93105 * 21 20 19 42 42 H 0.96702 * 117.00543 * 180.02562 * 26 24 22 43 43 H 1.08007 * 120.19722 * 179.70279 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.6440 1.9574 -1.3887 5 1 1.3710 2.6924 0.5400 6 1 3.4541 1.4898 0.8486 7 6 2.0080 -1.2118 -0.0005 8 1 1.8060 -1.9523 0.7593 9 6 2.9796 -1.4670 -0.9960 10 6 2.5837 -1.7184 -2.3235 11 6 3.5321 -1.9671 -3.2905 12 6 4.8776 -1.9712 -2.9673 13 6 5.2899 -1.7232 -1.6539 14 6 6.7299 -1.7287 -1.3168 15 8 7.1052 -2.2012 -0.2617 16 7 7.6259 -1.2099 -2.1795 17 6 7.1674 -0.4425 -3.3862 18 6 7.5047 0.9636 -3.1683 19 6 8.9899 1.2239 -2.9378 20 6 9.1909 1.1023 -1.4551 21 6 9.7218 -0.3044 -1.0852 22 6 9.0329 -1.3815 -1.9598 23 1 9.5287 -1.3990 -2.9304 24 6 9.2419 -2.7225 -1.3049 25 8 8.3622 -3.5504 -1.3294 26 8 10.4052 -2.9972 -0.6942 27 6 4.3447 -1.4765 -0.6646 28 1 -0.4850 0.8400 -0.0004 29 1 1.5354 -1.7162 -2.5836 30 1 3.2239 -2.1599 -4.3074 31 1 5.6133 -2.1669 -3.7333 32 1 6.0894 -0.5503 -3.5056 33 1 7.6779 -0.8120 -4.2756 34 1 7.1840 1.5356 -4.0389 35 1 6.9538 1.3211 -2.2985 36 1 9.5891 0.4795 -3.4621 37 1 9.2542 2.2259 -3.2757 38 1 9.9090 1.8541 -1.1277 39 1 8.2401 1.2704 -0.9492 40 1 10.7986 -0.3392 -1.2506 41 1 9.5131 -0.5047 -0.0343 42 1 10.4927 -3.8707 -0.2888 43 1 4.6583 -1.2892 0.3519 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598670115.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:29 Heat of formation + Delta-G solvation = -75.040931 kcal Electronic energy + Delta-G solvation = -27777.081329 eV Core-core repulsion = 23981.074495 eV Total energy + Delta-G solvation = -3796.006834 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.20489 -39.21221 -37.90931 -37.11826 -35.79111 -33.87803 -33.34323 -32.93415 -30.45528 -30.10218 -27.58337 -25.99582 -25.10354 -23.44069 -22.19865 -21.49949 -20.91429 -20.33207 -18.96178 -18.03017 -17.45820 -16.57560 -16.35220 -15.81495 -15.54287 -15.31586 -14.88578 -14.73123 -14.52884 -14.28365 -13.98973 -13.59047 -13.16567 -13.09810 -12.92674 -12.84692 -12.60126 -12.32388 -12.04536 -11.85922 -11.75863 -11.31392 -11.13866 -10.97512 -10.89246 -10.82623 -10.63913 -10.53459 -10.48013 -10.24777 -10.07326 -9.90908 -9.22323 -8.62508 -8.46129 -7.93090 -7.33663 -6.85331 -4.21548 1.95636 2.35285 2.45943 2.86062 3.12860 3.20278 3.23720 3.37075 3.55373 4.18806 4.43637 4.53294 4.62141 4.64456 4.81774 4.97404 4.99924 5.12517 5.15364 5.25221 5.41136 5.54504 5.59045 5.65225 5.78818 5.87413 5.91229 5.94442 6.01374 6.11532 6.15751 6.23791 6.44018 6.57241 6.58589 6.64523 6.71164 7.02980 7.27627 7.31336 7.39611 7.52909 7.86988 8.03906 8.07271 8.61912 8.63869 8.87599 9.05556 10.19789 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016017 B = 0.004656 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.690674 B = 6012.551696 C = 6507.438781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.143 3.857 3 Si 0.834 3.166 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.257 1.257 7 C -0.596 4.596 8 H 0.092 0.908 9 C 0.113 3.887 10 C -0.138 4.138 11 C -0.123 4.123 12 C -0.163 4.163 13 C -0.126 4.126 14 C 0.578 3.422 15 O -0.525 6.525 16 N -0.608 5.608 17 C 0.101 3.899 18 C -0.148 4.148 19 C -0.118 4.118 20 C -0.120 4.120 21 C -0.120 4.120 22 C 0.169 3.831 23 H 0.110 0.890 24 C 0.466 3.534 25 O -0.482 6.482 26 O -0.521 6.521 27 C -0.112 4.112 28 H 0.275 0.725 29 H 0.112 0.888 30 H 0.105 0.895 31 H 0.109 0.891 32 H 0.122 0.878 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.407 0.593 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.258 3.206 -8.854 20.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.078 4.078 3 Si 0.656 3.344 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.181 1.181 7 C -0.625 4.625 8 H 0.109 0.891 9 C 0.112 3.888 10 C -0.157 4.157 11 C -0.141 4.141 12 C -0.182 4.182 13 C -0.129 4.129 14 C 0.369 3.631 15 O -0.401 6.401 16 N -0.345 5.345 17 C -0.019 4.019 18 C -0.186 4.186 19 C -0.156 4.156 20 C -0.158 4.158 21 C -0.159 4.159 22 C 0.062 3.938 23 H 0.127 0.873 24 C 0.305 3.695 25 O -0.366 6.366 26 O -0.333 6.333 27 C -0.132 4.132 28 H 0.086 0.914 29 H 0.131 0.869 30 H 0.123 0.877 31 H 0.127 0.873 32 H 0.140 0.860 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.101 0.899 41 H 0.091 0.909 42 H 0.265 0.735 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 17.881 3.148 -8.440 20.022 hybrid contribution 0.427 0.256 0.365 0.617 sum 18.308 3.405 -8.075 20.297 Atomic orbital electron populations 1.70316 1.09009 1.29707 1.31019 1.25335 0.92793 1.00019 0.89628 0.87488 0.83028 0.83578 0.80288 1.18972 1.20724 1.18149 1.18325 1.22330 1.04914 1.16897 0.89067 1.17607 0.90688 0.88353 0.92182 1.22179 0.98526 1.00353 0.94658 1.20823 0.92906 1.01887 0.98500 1.20826 0.95741 1.07280 0.94357 1.19542 0.90823 1.07185 0.95371 1.18683 0.86348 0.75593 0.82433 1.90709 1.80236 1.44883 1.24230 1.47903 1.02994 1.56803 1.26773 1.21700 1.03954 0.90353 0.85901 1.20959 0.96928 0.97295 1.03456 1.21088 0.96213 1.01777 0.96507 1.21588 1.01938 0.95896 0.96383 1.22574 0.99591 0.93480 1.00303 1.20024 0.84686 0.89426 0.99675 0.87294 1.23468 0.79202 0.90232 0.76549 1.90791 1.41884 1.49020 1.54900 1.84452 1.38908 1.41838 1.68072 1.22206 0.93134 1.00334 0.97504 0.91385 0.86940 0.87703 0.87312 0.86041 0.90970 0.90996 0.90988 0.91436 0.91291 0.91948 0.91403 0.89888 0.90883 0.73478 0.86892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.80 13.93 55.55 0.77 -20.02 16 2 C 0.14 3.80 5.31 -17.34 -0.09 3.70 16 3 Si 0.83 19.50 28.94 -169.99 -4.92 14.58 16 4 H -0.26 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.26 -6.12 7.11 56.52 0.40 -5.71 16 7 C -0.60 -16.41 8.89 -37.73 -0.34 -16.75 16 8 H 0.09 2.70 8.06 -52.48 -0.42 2.27 16 9 C 0.11 2.85 4.51 -106.88 -0.48 2.37 16 10 C -0.14 -3.15 9.77 -38.81 -0.38 -3.53 16 11 C -0.12 -2.36 10.01 -39.72 -0.40 -2.76 16 12 C -0.16 -3.06 7.31 -38.92 -0.28 -3.34 16 13 C -0.13 -2.69 5.27 -105.04 -0.55 -3.24 16 14 C 0.58 11.64 5.99 -12.31 -0.07 11.56 16 15 O -0.52 -12.20 13.60 -19.80 -0.27 -12.47 16 16 N -0.61 -9.19 2.43 -170.26 -0.41 -9.61 16 17 C 0.10 1.19 4.91 -5.20 -0.03 1.17 16 18 C -0.15 -1.54 5.20 -30.19 -0.16 -1.70 16 19 C -0.12 -1.02 5.76 -28.40 -0.16 -1.18 16 20 C -0.12 -1.23 5.65 -27.19 -0.15 -1.38 16 21 C -0.12 -1.33 5.25 -24.76 -0.13 -1.46 16 22 C 0.17 2.16 2.09 -69.70 -0.15 2.01 16 23 H 0.11 1.05 6.89 -51.93 -0.36 0.69 16 24 C 0.47 7.09 6.43 36.00 0.23 7.32 16 25 O -0.48 -9.52 13.89 -27.07 -0.38 -9.89 16 26 O -0.52 -6.03 12.80 -39.24 -0.50 -6.53 16 27 C -0.11 -2.71 9.36 -38.44 -0.36 -3.07 16 28 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 29 H 0.11 2.56 8.06 -52.48 -0.42 2.14 16 30 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 31 H 0.11 1.71 6.47 -52.49 -0.34 1.37 16 32 H 0.12 1.64 4.08 -51.93 -0.21 1.43 16 33 H 0.07 0.66 8.12 -51.93 -0.42 0.23 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.92 6.92 -51.93 -0.36 0.56 16 36 H 0.07 0.51 6.29 -51.93 -0.33 0.18 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.86 6.82 -51.92 -0.35 0.50 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.98 7.99 -51.93 -0.42 0.56 16 42 H 0.41 3.29 9.10 45.56 0.41 3.70 16 43 H 0.11 2.82 8.04 -52.48 -0.42 2.40 16 LS Contribution 344.39 15.07 5.19 5.19 Total: -1.00 -33.13 344.39 -8.91 -42.04 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -4.89 Total: 6.99 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -3.50 Total: -10.28 kcal Atomic # 7 Polarization: -29.99 SS G_CDS: 0.36 Total: -29.63 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -1.15 Total: -28.89 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -4.92 Total: 14.58 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.13 -8.91 -42.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598670115.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.002 kcal (2) G-P(sol) polarization free energy of solvation -33.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds