Wall clock time and date at job start Tue Mar 31 2020 10:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86805 * 119.99763 * 2 1 4 4 H 1.48502 * 109.47036 * 262.69046 * 3 2 1 5 5 H 1.48501 * 109.47365 * 22.68656 * 3 2 1 6 6 H 1.48497 * 109.47250 * 142.69007 * 3 2 1 7 7 C 1.39935 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99752 * 305.63693 * 7 2 1 9 9 C 1.41429 * 120.00467 * 125.63771 * 7 2 1 10 10 C 1.40786 * 120.17736 * 288.45700 * 9 7 2 11 11 C 1.37711 * 120.04226 * 180.02562 * 10 9 7 12 12 C 1.38373 * 120.41175 * 359.95668 * 11 10 9 13 13 C 1.39884 * 120.35799 * 0.02562 * 12 11 10 14 14 C 1.47887 * 120.02579 * 180.02562 * 13 12 11 15 15 O 1.21542 * 119.99922 * 218.47713 * 14 13 12 16 16 N 1.34773 * 120.00014 * 38.47587 * 14 13 12 17 17 C 1.50173 * 120.53550 * 9.16683 * 16 14 13 18 18 C 1.46236 * 107.53158 * 109.56762 * 17 16 14 19 19 C 1.52526 * 114.27829 * 58.40831 * 18 17 16 20 20 C 1.50128 * 105.41563 * 270.59450 * 19 18 17 21 21 C 1.54838 * 110.82236 * 97.68032 * 20 19 18 22 22 C 1.43432 * 120.53581 * 189.14366 * 16 14 13 23 23 H 1.09002 * 108.15746 * 149.87510 * 22 16 14 24 24 C 1.50695 * 108.00184 * 33.18465 * 22 16 14 25 25 O 1.20831 * 119.99698 * 16.46761 * 24 22 16 26 26 O 1.34222 * 120.00278 * 196.47276 * 24 22 16 27 27 C 1.39033 * 119.94438 * 0.27455 * 13 12 11 28 28 H 0.97000 * 120.00223 * 0.02562 * 1 2 3 29 29 H 1.08004 * 119.97883 * 0.02562 * 10 9 7 30 30 H 1.07995 * 119.79782 * 179.97438 * 11 10 9 31 31 H 1.07995 * 119.82272 * 180.02562 * 12 11 10 32 32 H 1.08995 * 109.84669 * 350.05527 * 17 16 14 33 33 H 1.09004 * 109.84193 * 229.07146 * 17 16 14 34 34 H 1.08997 * 108.52374 * 179.64884 * 18 17 16 35 35 H 1.08993 * 108.52290 * 297.32331 * 18 17 16 36 36 H 1.08996 * 110.24976 * 29.56502 * 19 18 17 37 37 H 1.09001 * 110.25487 * 151.47578 * 19 18 17 38 38 H 1.09000 * 109.21064 * 218.03141 * 20 19 18 39 39 H 1.09010 * 109.20660 * 337.38257 * 20 19 18 40 40 H 1.08998 * 109.35582 * 81.33657 * 21 20 19 41 41 H 1.08998 * 109.36644 * 200.93105 * 21 20 19 42 42 H 0.96702 * 117.00543 * 180.02562 * 26 24 22 43 43 H 1.08007 * 120.19722 * 179.70279 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.6440 1.9574 -1.3887 5 1 1.3710 2.6924 0.5400 6 1 3.4541 1.4898 0.8486 7 6 2.0080 -1.2118 -0.0005 8 1 1.8060 -1.9523 0.7593 9 6 2.9796 -1.4670 -0.9960 10 6 2.5837 -1.7184 -2.3235 11 6 3.5321 -1.9671 -3.2905 12 6 4.8776 -1.9712 -2.9673 13 6 5.2899 -1.7232 -1.6539 14 6 6.7299 -1.7287 -1.3168 15 8 7.1052 -2.2012 -0.2617 16 7 7.6259 -1.2099 -2.1795 17 6 7.1674 -0.4425 -3.3862 18 6 7.5047 0.9636 -3.1683 19 6 8.9899 1.2239 -2.9378 20 6 9.1909 1.1023 -1.4551 21 6 9.7218 -0.3044 -1.0852 22 6 9.0329 -1.3815 -1.9598 23 1 9.5287 -1.3990 -2.9304 24 6 9.2419 -2.7225 -1.3049 25 8 8.3622 -3.5504 -1.3294 26 8 10.4052 -2.9972 -0.6942 27 6 4.3447 -1.4765 -0.6646 28 1 -0.4850 0.8400 -0.0004 29 1 1.5354 -1.7162 -2.5836 30 1 3.2239 -2.1599 -4.3074 31 1 5.6133 -2.1669 -3.7333 32 1 6.0894 -0.5503 -3.5056 33 1 7.6779 -0.8120 -4.2756 34 1 7.1840 1.5356 -4.0389 35 1 6.9538 1.3211 -2.2985 36 1 9.5891 0.4795 -3.4621 37 1 9.2542 2.2259 -3.2757 38 1 9.9090 1.8541 -1.1277 39 1 8.2401 1.2704 -0.9492 40 1 10.7986 -0.3392 -1.2506 41 1 9.5131 -0.5047 -0.0343 42 1 10.4927 -3.8707 -0.2888 43 1 4.6583 -1.2892 0.3519 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598670115.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:29 Heat of formation + Delta-G solvation = -95.974311 kcal Electronic energy + Delta-G solvation = -27777.989068 eV Core-core repulsion = 23981.074495 eV Total energy + Delta-G solvation = -3796.914573 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.40534 -40.49081 -39.24705 -38.54916 -36.95912 -35.49584 -34.73088 -33.97486 -32.20779 -31.76247 -28.68535 -27.30452 -26.57955 -24.85256 -23.25217 -22.75442 -22.60034 -21.30020 -20.34864 -19.46050 -18.74860 -18.06148 -17.59710 -17.13172 -16.83018 -16.71539 -16.50093 -16.11929 -15.63873 -15.37473 -15.33037 -14.89070 -14.87445 -14.54479 -14.30487 -14.14724 -13.76362 -13.68230 -13.40891 -13.29713 -13.01918 -12.78034 -12.66196 -12.45993 -12.20103 -12.06903 -11.93828 -11.78959 -11.66188 -11.55131 -11.37028 -11.16479 -10.74988 -10.47222 -9.86483 -9.60725 -9.14946 -8.85162 -6.30104 0.27094 0.72423 1.23541 1.23753 1.31007 1.45803 1.79635 1.84676 2.21491 2.24614 2.49189 3.18562 3.57736 3.70931 3.76928 3.91334 4.05371 4.16361 4.26350 4.29457 4.31611 4.39784 4.58929 4.60273 4.72730 4.74938 4.83197 4.91742 4.93785 5.00499 5.18011 5.23986 5.29058 5.31925 5.38535 5.44330 5.47234 5.55987 5.63775 5.66015 5.67823 6.06213 6.15811 6.30128 6.47633 6.91432 6.97288 6.99172 7.22452 8.23781 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016017 B = 0.004656 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.690674 B = 6012.551696 C = 6507.438781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.113 3.887 3 Si 0.893 3.107 4 H -0.253 1.253 5 H -0.261 1.261 6 H -0.274 1.274 7 C -0.634 4.634 8 H 0.045 0.955 9 C 0.086 3.914 10 C -0.148 4.148 11 C -0.109 4.109 12 C -0.133 4.133 13 C -0.134 4.134 14 C 0.571 3.429 15 O -0.570 6.570 16 N -0.598 5.598 17 C 0.094 3.906 18 C -0.149 4.149 19 C -0.111 4.111 20 C -0.119 4.119 21 C -0.114 4.114 22 C 0.160 3.840 23 H 0.158 0.842 24 C 0.464 3.536 25 O -0.535 6.535 26 O -0.508 6.508 27 C -0.134 4.134 28 H 0.287 0.713 29 H 0.106 0.894 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.104 0.896 33 H 0.119 0.881 34 H 0.098 0.902 35 H 0.037 0.963 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.031 0.969 40 H 0.116 0.884 41 H 0.038 0.962 42 H 0.422 0.578 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.632 4.782 -13.219 25.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.106 4.106 3 Si 0.713 3.287 4 H -0.177 1.177 5 H -0.185 1.185 6 H -0.199 1.199 7 C -0.663 4.663 8 H 0.063 0.937 9 C 0.084 3.916 10 C -0.166 4.166 11 C -0.127 4.127 12 C -0.152 4.152 13 C -0.137 4.137 14 C 0.362 3.638 15 O -0.449 6.449 16 N -0.333 5.333 17 C -0.024 4.024 18 C -0.187 4.187 19 C -0.148 4.148 20 C -0.157 4.157 21 C -0.153 4.153 22 C 0.054 3.946 23 H 0.175 0.825 24 C 0.306 3.694 25 O -0.423 6.423 26 O -0.321 6.321 27 C -0.154 4.154 28 H 0.098 0.902 29 H 0.124 0.876 30 H 0.172 0.828 31 H 0.172 0.828 32 H 0.122 0.878 33 H 0.137 0.863 34 H 0.116 0.884 35 H 0.056 0.944 36 H 0.110 0.890 37 H 0.107 0.893 38 H 0.099 0.901 39 H 0.050 0.950 40 H 0.135 0.865 41 H 0.057 0.943 42 H 0.282 0.718 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 21.291 4.762 -12.837 25.313 hybrid contribution -0.463 -0.327 1.674 1.767 sum 20.827 4.436 -11.163 24.043 Atomic orbital electron populations 1.70264 1.10011 1.31097 1.32149 1.25936 0.93319 1.02118 0.89247 0.86573 0.81254 0.80270 0.80569 1.17714 1.18539 1.19854 1.18270 1.24938 1.05386 1.17747 0.93697 1.17596 0.90530 0.90355 0.93080 1.22184 0.99254 1.00922 0.94283 1.21244 0.92172 0.99464 0.99801 1.21324 0.96595 1.03369 0.93868 1.19804 0.91584 1.06393 0.95886 1.18560 0.86526 0.75991 0.82733 1.90679 1.80793 1.47250 1.26227 1.47929 1.03519 1.55344 1.26462 1.22002 1.03483 0.90977 0.85908 1.20945 0.98159 0.96474 1.03086 1.21105 0.94927 1.03811 0.94922 1.21587 1.00568 0.95689 0.97845 1.22579 1.01337 0.93383 0.97996 1.20507 0.83461 0.88506 1.02159 0.82459 1.24029 0.78993 0.90541 0.75819 1.90773 1.43613 1.50774 1.57146 1.84411 1.37270 1.43018 1.67409 1.21965 0.93721 1.02588 0.97121 0.90199 0.87583 0.82815 0.82806 0.87811 0.86305 0.88399 0.94426 0.88971 0.89287 0.90138 0.94971 0.86533 0.94289 0.71780 0.89948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -45.19 13.93 21.82 0.30 -44.88 16 2 C 0.11 6.29 5.31 85.25 0.45 6.74 16 3 Si 0.89 41.78 28.94 68.60 1.99 43.77 16 4 H -0.25 -11.25 7.11 99.48 0.71 -10.55 16 5 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 6 H -0.27 -13.38 7.11 99.48 0.71 -12.67 16 7 C -0.63 -37.83 8.89 23.47 0.21 -37.62 16 8 H 0.05 2.99 8.06 -2.91 -0.02 2.96 16 9 C 0.09 4.56 4.51 -21.32 -0.10 4.47 16 10 C -0.15 -6.76 9.77 22.77 0.22 -6.54 16 11 C -0.11 -3.87 10.01 22.18 0.22 -3.65 16 12 C -0.13 -4.60 7.31 22.70 0.17 -4.43 16 13 C -0.13 -5.72 5.27 -20.13 -0.11 -5.83 16 14 C 0.57 23.09 5.99 86.80 0.52 23.61 16 15 O -0.57 -27.68 13.60 20.18 0.27 -27.40 16 16 N -0.60 -16.60 2.43 -810.88 -1.97 -18.57 16 17 C 0.09 1.80 4.91 83.58 0.41 2.21 16 18 C -0.15 -2.49 5.20 28.35 0.15 -2.35 16 19 C -0.11 -1.33 5.76 29.51 0.17 -1.16 16 20 C -0.12 -2.10 5.65 30.30 0.17 -1.93 16 21 C -0.11 -2.22 5.25 31.87 0.17 -2.05 16 22 C 0.16 3.55 2.09 45.46 0.10 3.64 16 23 H 0.16 2.02 6.89 -2.39 -0.02 2.00 16 24 C 0.46 13.39 6.43 71.23 0.46 13.85 16 25 O -0.53 -21.01 13.89 29.90 0.42 -20.59 16 26 O -0.51 -10.82 12.80 -51.34 -0.66 -11.47 16 27 C -0.13 -6.89 9.36 23.01 0.22 -6.68 16 28 H 0.29 14.29 8.30 -92.71 -0.77 13.52 16 29 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 30 H 0.15 4.04 8.06 -2.91 -0.02 4.01 16 31 H 0.15 3.98 6.47 -2.91 -0.02 3.96 16 32 H 0.10 2.35 4.08 -2.39 -0.01 2.34 16 33 H 0.12 1.27 8.12 -2.38 -0.02 1.25 16 34 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.04 0.90 6.92 -2.39 -0.02 0.89 16 36 H 0.09 0.71 6.29 -2.39 -0.02 0.70 16 37 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.03 0.80 6.82 -2.38 -0.02 0.78 16 40 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.04 1.02 7.99 -2.39 -0.02 1.01 16 42 H 0.42 6.28 9.10 -74.06 -0.67 5.60 16 43 H 0.08 4.59 8.04 -2.91 -0.02 4.56 16 Total: -1.00 -81.76 344.39 4.15 -77.61 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 0.37 Total: 19.26 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: 3.42 Total: -17.72 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: -1.67 Total: -63.45 kcal Atomic # 8 Polarization: -59.50 SS G_CDS: 0.03 Total: -59.47 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 1.99 Total: 43.77 kcal Total: -81.76 4.15 -77.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598670115.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.363 kcal (2) G-P(sol) polarization free energy of solvation -81.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds