Wall clock time and date at job start Tue Mar 31 2020 10:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86797 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47242 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47363 * 119.99947 * 3 2 1 6 6 H 1.48506 * 109.46570 * 239.99777 * 3 2 1 7 7 C 1.39937 * 120.00051 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99977 * 153.73439 * 7 2 1 9 9 C 1.41437 * 119.99806 * 333.73731 * 7 2 1 10 10 C 1.40787 * 120.17856 * 333.76811 * 9 7 2 11 11 C 1.37714 * 120.03727 * 179.69934 * 10 9 7 12 12 C 1.38367 * 120.41286 * 0.60454 * 11 10 9 13 13 C 1.39873 * 120.35963 * 359.67304 * 12 11 10 14 14 C 1.47884 * 120.02686 * 179.97438 * 13 12 11 15 15 O 1.21552 * 120.00086 * 135.71087 * 14 13 12 16 16 N 1.34767 * 120.00113 * 315.71082 * 14 13 12 17 17 C 1.47606 * 118.64477 * 349.85930 * 16 14 13 18 18 C 1.53597 * 112.34313 * 222.03763 * 17 16 14 19 19 C 1.50890 * 109.95206 * 40.83077 * 18 17 16 20 20 C 1.52567 * 109.35931 * 268.02467 * 19 18 17 21 21 C 1.47095 * 114.32351 * 85.01328 * 20 19 18 22 22 C 1.44580 * 118.64649 * 170.12562 * 16 14 13 23 23 H 1.09002 * 109.45206 * 209.29107 * 22 16 14 24 24 C 1.50702 * 109.45203 * 329.24151 * 22 16 14 25 25 O 1.20824 * 119.99632 * 261.24617 * 24 22 16 26 26 O 1.34231 * 120.00006 * 81.24468 * 24 22 16 27 27 C 1.39033 * 119.94947 * 0.02562 * 13 12 11 28 28 H 0.96998 * 119.99792 * 174.12340 * 1 2 3 29 29 H 1.08000 * 119.97791 * 359.97438 * 10 9 7 30 30 H 1.08000 * 119.79076 * 180.29606 * 11 10 9 31 31 H 1.07999 * 119.82179 * 179.69351 * 12 11 10 32 32 H 1.08994 * 108.94497 * 342.84049 * 17 16 14 33 33 H 1.08999 * 108.94904 * 101.46559 * 17 16 14 34 34 H 1.08997 * 109.51391 * 280.64220 * 18 17 16 35 35 H 1.08992 * 109.36901 * 160.93124 * 18 17 16 36 36 H 1.09001 * 109.48924 * 148.06013 * 19 18 17 37 37 H 1.08997 * 109.50699 * 28.00167 * 19 18 17 38 38 H 1.08998 * 108.51328 * 323.75964 * 20 19 18 39 39 H 1.08997 * 108.38843 * 206.17959 * 20 19 18 40 40 H 1.09005 * 109.32592 * 176.93974 * 21 20 19 41 41 H 1.08991 * 109.32716 * 57.45993 * 21 20 19 42 42 H 0.96702 * 116.99992 * 180.02562 * 26 24 22 43 43 H 1.08007 * 120.20285 * 179.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 1.2773 2.7464 -0.0006 5 1 3.0960 1.6965 1.2125 6 1 3.0960 1.6963 -1.2126 7 6 2.0080 -1.2119 0.0005 8 1 3.0044 -1.2603 -0.4133 9 6 1.4103 -2.3733 0.5431 10 6 0.4207 -2.2610 1.5382 11 6 -0.1637 -3.3936 2.0600 12 6 0.2239 -4.6474 1.6215 13 6 1.2095 -4.7788 0.6378 14 6 1.6186 -6.1225 0.1749 15 8 1.7620 -6.3387 -1.0126 16 7 1.8324 -7.1073 1.0698 17 6 1.8733 -6.7630 2.5045 18 6 3.0020 -7.4926 3.2481 19 6 4.2485 -7.5145 2.3980 20 6 4.2699 -8.7922 1.5647 21 6 3.5204 -8.7047 0.3020 22 6 2.0181 -8.4564 0.5844 23 1 1.6683 -9.1640 1.3362 24 6 1.2313 -8.6452 -0.6869 25 8 0.1496 -9.1825 -0.6537 26 8 1.7321 -8.2164 -1.8561 27 6 1.8051 -3.6453 0.0961 28 1 -0.4850 -0.8356 -0.0860 29 1 0.1167 -1.2860 1.8893 30 1 -0.9259 -3.3027 2.8197 31 1 -0.2373 -5.5293 2.0408 32 1 2.0197 -5.6878 2.6064 33 1 0.9210 -7.0336 2.9607 34 1 2.6940 -8.5155 3.4642 35 1 3.2119 -6.9749 4.1840 36 1 5.1279 -7.4851 3.0413 37 1 4.2529 -6.6485 1.7362 38 1 3.8494 -9.6017 2.1614 39 1 5.3073 -9.0358 1.3353 40 1 3.6343 -9.6375 -0.2505 41 1 3.9157 -7.8836 -0.2959 42 1 1.1907 -8.3594 -2.6445 43 1 2.5669 -3.7420 -0.6634 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598670117.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:32 Heat of formation + Delta-G solvation = -108.148978 kcal Electronic energy + Delta-G solvation = -27561.203534 eV Core-core repulsion = 23763.761028 eV Total energy + Delta-G solvation = -3797.442506 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.05899 -39.21170 -37.81944 -37.04834 -35.78212 -34.24610 -33.65787 -32.88751 -29.99683 -29.77899 -27.37515 -26.03195 -25.16464 -23.13945 -22.20796 -21.18528 -21.00222 -20.56048 -19.18106 -18.06546 -17.52246 -16.78109 -16.62171 -15.70874 -15.26536 -15.06161 -14.98609 -14.58128 -14.33102 -14.24843 -13.97358 -13.60392 -13.29175 -13.04730 -13.00624 -12.50607 -12.40322 -12.28215 -12.05817 -11.90435 -11.38662 -11.24012 -11.14551 -10.97456 -10.86631 -10.80017 -10.70654 -10.57283 -10.45217 -10.28881 -10.22501 -9.59986 -9.20688 -9.00851 -8.55256 -7.87292 -7.73066 -7.28616 -4.55123 2.01144 2.24879 2.65400 3.11077 3.15206 3.20009 3.24179 3.32188 3.50257 3.96521 4.43670 4.44569 4.56424 4.73060 4.82914 4.98262 5.16651 5.18645 5.32604 5.40631 5.50530 5.59365 5.63995 5.75900 5.84272 5.97328 5.99422 6.04608 6.05562 6.14244 6.18466 6.29132 6.59221 6.64885 6.70929 6.73471 6.87785 7.12786 7.38234 7.52051 7.59563 7.61780 7.72696 8.03859 8.10954 8.12944 8.53239 8.59160 8.74962 9.96267 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017900 B = 0.003837 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.893894 B = 7296.381941 C = 7641.025391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.040 3.960 3 Si 1.065 2.935 4 H -0.273 1.273 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.078 0.922 9 C 0.091 3.909 10 C -0.204 4.204 11 C -0.087 4.087 12 C -0.226 4.226 13 C -0.098 4.098 14 C 0.550 3.450 15 O -0.507 6.507 16 N -0.603 5.603 17 C 0.112 3.888 18 C -0.134 4.134 19 C -0.120 4.120 20 C -0.116 4.116 21 C -0.127 4.127 22 C 0.164 3.836 23 H 0.115 0.885 24 C 0.489 3.511 25 O -0.530 6.530 26 O -0.467 6.467 27 C -0.165 4.165 28 H 0.299 0.701 29 H 0.107 0.893 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.395 0.605 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.561 -13.018 5.334 15.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.182 4.182 3 Si 0.888 3.112 4 H -0.198 1.198 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.547 4.547 8 H 0.096 0.904 9 C 0.088 3.912 10 C -0.223 4.223 11 C -0.105 4.105 12 C -0.246 4.246 13 C -0.101 4.101 14 C 0.341 3.659 15 O -0.383 6.383 16 N -0.340 5.340 17 C -0.010 4.010 18 C -0.172 4.172 19 C -0.157 4.157 20 C -0.154 4.154 21 C -0.166 4.166 22 C 0.058 3.942 23 H 0.132 0.868 24 C 0.331 3.669 25 O -0.420 6.420 26 O -0.275 6.275 27 C -0.186 4.186 28 H 0.113 0.887 29 H 0.125 0.875 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.122 0.878 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.102 0.898 42 H 0.252 0.748 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.326 -11.577 5.099 14.144 hybrid contribution -0.347 -1.898 -0.466 1.985 sum 5.978 -13.475 4.633 15.453 Atomic orbital electron populations 1.70468 1.08245 1.34279 1.28485 1.27037 0.95612 1.04346 0.91239 0.83639 0.75696 0.73768 0.78086 1.19812 1.19909 1.20053 1.20568 1.03652 0.94161 1.36347 0.90416 1.17596 0.91103 0.92205 0.90329 1.21279 1.03355 0.97282 1.00394 1.20533 0.98463 0.92695 0.98856 1.20377 1.04182 0.96418 1.03640 1.19256 1.00473 0.90746 0.99601 1.19343 0.75550 0.85206 0.85773 1.90861 1.50296 1.81114 1.16005 1.47623 1.73422 1.05173 1.07777 1.22124 0.98279 1.02230 0.78355 1.21784 0.95310 1.01086 0.99012 1.21102 0.97474 0.98597 0.98559 1.20449 1.00487 0.98139 0.96305 1.21233 0.93204 1.03457 0.98669 1.20753 0.95501 0.86833 0.91064 0.86762 1.23171 0.84215 0.73191 0.86351 1.90698 1.22101 1.41579 1.87626 1.84864 1.51833 1.73819 1.16962 1.21018 1.04533 0.91089 1.01911 0.88748 0.87464 0.88623 0.88656 0.87801 0.91839 0.91707 0.90280 0.91744 0.91085 0.92235 0.91892 0.90843 0.89805 0.74776 0.88023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.52 12.35 55.55 0.69 -19.84 16 2 C 0.04 0.98 4.90 -17.34 -0.09 0.90 16 3 Si 1.06 20.90 30.01 -169.99 -5.10 15.80 16 4 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 6 H -0.28 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.52 -13.38 8.97 -37.73 -0.34 -13.72 16 8 H 0.08 1.96 7.97 -52.49 -0.42 1.54 16 9 C 0.09 2.30 5.27 -106.87 -0.56 1.74 16 10 C -0.20 -4.90 7.98 -38.81 -0.31 -5.21 16 11 C -0.09 -1.86 10.01 -39.73 -0.40 -2.25 16 12 C -0.23 -4.63 7.73 -38.92 -0.30 -4.93 16 13 C -0.10 -2.12 4.68 -105.04 -0.49 -2.61 16 14 C 0.55 10.86 6.74 -12.32 -0.08 10.78 16 15 O -0.51 -10.94 12.50 -20.13 -0.25 -11.19 16 16 N -0.60 -9.32 2.21 -167.54 -0.37 -9.69 16 17 C 0.11 1.45 4.60 -3.13 -0.01 1.43 16 18 C -0.13 -1.30 5.71 -27.48 -0.16 -1.46 16 19 C -0.12 -1.23 5.50 -28.01 -0.15 -1.38 16 20 C -0.12 -1.10 5.15 -29.79 -0.15 -1.25 16 21 C -0.13 -1.47 4.66 -28.58 -0.13 -1.60 16 22 C 0.16 2.25 2.40 -69.12 -0.17 2.09 16 23 H 0.11 1.34 8.07 -51.93 -0.42 0.92 16 24 C 0.49 7.96 6.05 36.01 0.22 8.18 16 25 O -0.53 -9.91 17.86 -18.75 -0.33 -10.24 16 26 O -0.47 -7.26 9.64 -47.69 -0.46 -7.72 16 27 C -0.17 -3.99 9.42 -38.44 -0.36 -4.36 16 28 H 0.30 7.99 6.81 -40.82 -0.28 7.71 16 29 H 0.11 2.66 6.58 -52.49 -0.35 2.32 16 30 H 0.10 1.79 8.06 -52.49 -0.42 1.36 16 31 H 0.10 1.74 6.78 -52.49 -0.36 1.39 16 32 H 0.10 1.55 5.70 -51.93 -0.30 1.26 16 33 H 0.06 0.76 7.57 -51.93 -0.39 0.37 16 34 H 0.06 0.54 7.32 -51.93 -0.38 0.16 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.92 7.48 -51.93 -0.39 0.53 16 38 H 0.06 0.48 7.36 -51.93 -0.38 0.10 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 41 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 42 H 0.40 4.72 9.10 45.56 0.41 5.14 16 43 H 0.10 2.48 8.06 -52.48 -0.42 2.06 16 LS Contribution 343.19 15.07 5.17 5.17 Total: -1.00 -30.22 343.19 -9.15 -39.37 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -4.99 Total: 11.99 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: -3.49 Total: -13.65 kcal Atomic # 7 Polarization: -29.84 SS G_CDS: 0.32 Total: -29.52 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -1.05 Total: -29.16 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.10 Total: 15.80 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.22 -9.15 -39.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598670117.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.780 kcal (2) G-P(sol) polarization free energy of solvation -30.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds