Wall clock time and date at job start Tue Mar 31 2020 10:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86797 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47242 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47363 * 119.99947 * 3 2 1 6 6 H 1.48506 * 109.46570 * 239.99777 * 3 2 1 7 7 C 1.39937 * 120.00051 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99977 * 153.73439 * 7 2 1 9 9 C 1.41437 * 119.99806 * 333.73731 * 7 2 1 10 10 C 1.40787 * 120.17856 * 333.76811 * 9 7 2 11 11 C 1.37714 * 120.03727 * 179.69934 * 10 9 7 12 12 C 1.38367 * 120.41286 * 0.60454 * 11 10 9 13 13 C 1.39873 * 120.35963 * 359.67304 * 12 11 10 14 14 C 1.47884 * 120.02686 * 179.97438 * 13 12 11 15 15 O 1.21552 * 120.00086 * 135.71087 * 14 13 12 16 16 N 1.34767 * 120.00113 * 315.71082 * 14 13 12 17 17 C 1.47606 * 118.64477 * 349.85930 * 16 14 13 18 18 C 1.53597 * 112.34313 * 222.03763 * 17 16 14 19 19 C 1.50890 * 109.95206 * 40.83077 * 18 17 16 20 20 C 1.52567 * 109.35931 * 268.02467 * 19 18 17 21 21 C 1.47095 * 114.32351 * 85.01328 * 20 19 18 22 22 C 1.44580 * 118.64649 * 170.12562 * 16 14 13 23 23 H 1.09002 * 109.45206 * 209.29107 * 22 16 14 24 24 C 1.50702 * 109.45203 * 329.24151 * 22 16 14 25 25 O 1.20824 * 119.99632 * 261.24617 * 24 22 16 26 26 O 1.34231 * 120.00006 * 81.24468 * 24 22 16 27 27 C 1.39033 * 119.94947 * 0.02562 * 13 12 11 28 28 H 0.96998 * 119.99792 * 174.12340 * 1 2 3 29 29 H 1.08000 * 119.97791 * 359.97438 * 10 9 7 30 30 H 1.08000 * 119.79076 * 180.29606 * 11 10 9 31 31 H 1.07999 * 119.82179 * 179.69351 * 12 11 10 32 32 H 1.08994 * 108.94497 * 342.84049 * 17 16 14 33 33 H 1.08999 * 108.94904 * 101.46559 * 17 16 14 34 34 H 1.08997 * 109.51391 * 280.64220 * 18 17 16 35 35 H 1.08992 * 109.36901 * 160.93124 * 18 17 16 36 36 H 1.09001 * 109.48924 * 148.06013 * 19 18 17 37 37 H 1.08997 * 109.50699 * 28.00167 * 19 18 17 38 38 H 1.08998 * 108.51328 * 323.75964 * 20 19 18 39 39 H 1.08997 * 108.38843 * 206.17959 * 20 19 18 40 40 H 1.09005 * 109.32592 * 176.93974 * 21 20 19 41 41 H 1.08991 * 109.32716 * 57.45993 * 21 20 19 42 42 H 0.96702 * 116.99992 * 180.02562 * 26 24 22 43 43 H 1.08007 * 120.20285 * 179.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 1.2773 2.7464 -0.0006 5 1 3.0960 1.6965 1.2125 6 1 3.0960 1.6963 -1.2126 7 6 2.0080 -1.2119 0.0005 8 1 3.0044 -1.2603 -0.4133 9 6 1.4103 -2.3733 0.5431 10 6 0.4207 -2.2610 1.5382 11 6 -0.1637 -3.3936 2.0600 12 6 0.2239 -4.6474 1.6215 13 6 1.2095 -4.7788 0.6378 14 6 1.6186 -6.1225 0.1749 15 8 1.7620 -6.3387 -1.0126 16 7 1.8324 -7.1073 1.0698 17 6 1.8733 -6.7630 2.5045 18 6 3.0020 -7.4926 3.2481 19 6 4.2485 -7.5145 2.3980 20 6 4.2699 -8.7922 1.5647 21 6 3.5204 -8.7047 0.3020 22 6 2.0181 -8.4564 0.5844 23 1 1.6683 -9.1640 1.3362 24 6 1.2313 -8.6452 -0.6869 25 8 0.1496 -9.1825 -0.6537 26 8 1.7321 -8.2164 -1.8561 27 6 1.8051 -3.6453 0.0961 28 1 -0.4850 -0.8356 -0.0860 29 1 0.1167 -1.2860 1.8893 30 1 -0.9259 -3.3027 2.8197 31 1 -0.2373 -5.5293 2.0408 32 1 2.0197 -5.6878 2.6064 33 1 0.9210 -7.0336 2.9607 34 1 2.6940 -8.5155 3.4642 35 1 3.2119 -6.9749 4.1840 36 1 5.1279 -7.4851 3.0413 37 1 4.2529 -6.6485 1.7362 38 1 3.8494 -9.6017 2.1614 39 1 5.3073 -9.0358 1.3353 40 1 3.6343 -9.6375 -0.2505 41 1 3.9157 -7.8836 -0.2959 42 1 1.1907 -8.3594 -2.6445 43 1 2.5669 -3.7420 -0.6634 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598670117.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:32 Heat of formation + Delta-G solvation = -124.512042 kcal Electronic energy + Delta-G solvation = -27561.913090 eV Core-core repulsion = 23763.761028 eV Total energy + Delta-G solvation = -3798.152062 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.35015 -40.62016 -39.32927 -38.47332 -37.06913 -35.93578 -34.93781 -33.90821 -31.81072 -31.49729 -28.55008 -27.23875 -26.85085 -24.65512 -23.38293 -22.75348 -22.57169 -21.42149 -20.73474 -19.62170 -18.79543 -18.28226 -17.84700 -17.14494 -16.73388 -16.49783 -16.33209 -15.88529 -15.80913 -15.53200 -15.25159 -14.97294 -14.66726 -14.45102 -14.24266 -14.05351 -13.87754 -13.55733 -13.36725 -13.20156 -12.96385 -12.66759 -12.56119 -12.35253 -12.13235 -12.04735 -11.94988 -11.85875 -11.64441 -11.51199 -11.40695 -11.23971 -10.94653 -10.67381 -9.82203 -9.69760 -9.55856 -9.21939 -6.52222 0.32474 0.83188 0.90621 1.50621 1.56429 1.70643 1.80273 2.07832 2.12522 2.32500 2.62594 3.41139 3.44635 3.63704 3.70711 3.85197 4.01178 4.12964 4.25484 4.26053 4.36472 4.42928 4.59968 4.64058 4.70627 4.75622 4.85917 4.92642 4.99493 5.03714 5.17368 5.23156 5.25118 5.26434 5.33588 5.41202 5.53385 5.58057 5.62756 5.66041 5.72152 5.81989 6.03304 6.17662 6.26696 6.68807 6.84013 6.93721 7.04454 7.99858 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017900 B = 0.003837 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.893894 B = 7296.381941 C = 7641.025391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.008 3.992 3 Si 1.116 2.884 4 H -0.270 1.270 5 H -0.260 1.260 6 H -0.262 1.262 7 C -0.559 4.559 8 H 0.068 0.932 9 C 0.068 3.932 10 C -0.215 4.215 11 C -0.085 4.085 12 C -0.203 4.203 13 C -0.098 4.098 14 C 0.544 3.456 15 O -0.535 6.535 16 N -0.590 5.590 17 C 0.103 3.897 18 C -0.126 4.126 19 C -0.122 4.122 20 C -0.115 4.115 21 C -0.117 4.117 22 C 0.160 3.840 23 H 0.147 0.853 24 C 0.485 3.515 25 O -0.559 6.559 26 O -0.475 6.475 27 C -0.189 4.189 28 H 0.282 0.718 29 H 0.095 0.905 30 H 0.130 0.870 31 H 0.128 0.872 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.034 0.966 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.051 0.949 42 H 0.407 0.593 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.933 -15.153 7.678 18.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.208 4.208 3 Si 0.932 3.068 4 H -0.194 1.194 5 H -0.184 1.184 6 H -0.187 1.187 7 C -0.587 4.587 8 H 0.087 0.913 9 C 0.065 3.935 10 C -0.234 4.234 11 C -0.103 4.103 12 C -0.222 4.222 13 C -0.101 4.101 14 C 0.334 3.666 15 O -0.414 6.414 16 N -0.325 5.325 17 C -0.017 4.017 18 C -0.163 4.163 19 C -0.159 4.159 20 C -0.152 4.152 21 C -0.156 4.156 22 C 0.055 3.945 23 H 0.164 0.836 24 C 0.328 3.672 25 O -0.450 6.450 26 O -0.283 6.283 27 C -0.210 4.210 28 H 0.094 0.906 29 H 0.113 0.887 30 H 0.148 0.852 31 H 0.146 0.854 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.100 0.900 37 H 0.053 0.947 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.110 0.890 41 H 0.070 0.930 42 H 0.266 0.734 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.712 -13.753 7.468 17.029 hybrid contribution -0.485 -1.457 -1.173 1.932 sum 6.228 -15.210 6.295 17.600 Atomic orbital electron populations 1.70592 1.08872 1.33048 1.31132 1.28408 0.95604 1.07281 0.89549 0.83026 0.74823 0.69783 0.79119 1.19405 1.18430 1.18662 1.20739 1.03811 0.95559 1.38622 0.91343 1.17869 0.91917 0.92654 0.91014 1.21282 1.03641 0.97849 1.00660 1.20895 0.98435 0.91970 0.98962 1.20742 1.02383 0.97289 1.01825 1.19534 1.00015 0.91425 0.99107 1.19107 0.76132 0.85371 0.86010 1.90849 1.51672 1.81635 1.17201 1.47594 1.71600 1.05048 1.08259 1.22353 1.00875 1.01480 0.77006 1.21787 0.93452 1.02341 0.98753 1.21122 0.98726 0.97607 0.98466 1.20455 1.01089 0.98424 0.95277 1.21186 0.91606 1.03022 0.99788 1.21143 0.96742 0.86012 0.90606 0.83568 1.23713 0.84000 0.72329 0.87111 1.90680 1.23328 1.42947 1.88073 1.84846 1.52279 1.73517 1.17691 1.20970 1.05327 0.91991 1.02689 0.90577 0.88713 0.85173 0.85381 0.90257 0.89936 0.88992 0.88668 0.90014 0.94711 0.89491 0.90660 0.89004 0.93047 0.73384 0.89861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.75 12.35 21.83 0.27 -43.48 16 2 C 0.01 0.40 4.90 85.25 0.42 0.82 16 3 Si 1.12 42.87 30.01 68.60 2.06 44.93 16 4 H -0.27 -10.10 7.11 99.48 0.71 -9.40 16 5 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 6 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 7 C -0.56 -30.41 8.97 23.47 0.21 -30.20 16 8 H 0.07 3.69 7.97 -2.91 -0.02 3.67 16 9 C 0.07 3.63 5.27 -21.32 -0.11 3.51 16 10 C -0.21 -10.58 7.98 22.77 0.18 -10.40 16 11 C -0.08 -3.50 10.01 22.18 0.22 -3.28 16 12 C -0.20 -7.97 7.73 22.70 0.18 -7.80 16 13 C -0.10 -4.28 4.68 -20.14 -0.09 -4.38 16 14 C 0.54 21.48 6.74 86.80 0.59 22.06 16 15 O -0.54 -23.61 12.50 20.46 0.26 -23.35 16 16 N -0.59 -17.17 2.21 -802.26 -1.77 -18.95 16 17 C 0.10 2.37 4.60 86.37 0.40 2.77 16 18 C -0.13 -1.93 5.71 30.11 0.17 -1.76 16 19 C -0.12 -2.15 5.50 29.76 0.16 -1.99 16 20 C -0.12 -1.75 5.15 28.61 0.15 -1.60 16 21 C -0.12 -2.45 4.66 29.40 0.14 -2.31 16 22 C 0.16 3.98 2.40 45.24 0.11 4.09 16 23 H 0.15 2.76 8.07 -2.39 -0.02 2.74 16 24 C 0.49 15.21 6.05 71.24 0.43 15.64 16 25 O -0.56 -20.14 17.86 21.97 0.39 -19.75 16 26 O -0.47 -14.73 9.64 -43.37 -0.42 -15.15 16 27 C -0.19 -9.63 9.42 23.01 0.22 -9.41 16 28 H 0.28 15.84 6.81 -92.71 -0.63 15.21 16 29 H 0.09 4.86 6.58 -2.91 -0.02 4.84 16 30 H 0.13 4.48 8.06 -2.91 -0.02 4.46 16 31 H 0.13 4.22 6.78 -2.91 -0.02 4.20 16 32 H 0.08 2.24 5.70 -2.39 -0.01 2.22 16 33 H 0.08 1.62 7.57 -2.39 -0.02 1.60 16 34 H 0.09 0.99 7.32 -2.39 -0.02 0.97 16 35 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.03 0.87 7.48 -2.39 -0.02 0.86 16 38 H 0.09 0.92 7.36 -2.39 -0.02 0.90 16 39 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.09 1.59 8.10 -2.38 -0.02 1.57 16 41 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.41 9.83 9.10 -74.06 -0.67 9.16 16 43 H 0.08 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -69.81 343.19 4.65 -65.16 By element: Atomic # 1 Polarization: 34.31 SS G_CDS: 0.51 Total: 34.81 kcal Atomic # 6 Polarization: -27.58 SS G_CDS: 3.36 Total: -24.22 kcal Atomic # 7 Polarization: -60.92 SS G_CDS: -1.50 Total: -62.43 kcal Atomic # 8 Polarization: -58.48 SS G_CDS: 0.23 Total: -58.25 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.06 Total: 44.93 kcal Total: -69.81 4.65 -65.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598670117.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.357 kcal (2) G-P(sol) polarization free energy of solvation -69.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds