Wall clock time and date at job start Tue Mar 31 2020 11:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34227 * 117.00245 * 2 1 4 4 O 1.20827 * 119.99875 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00335 * 179.97438 * 3 2 1 6 6 N 1.46495 * 109.46995 * 179.97438 * 5 3 2 7 7 C 1.37099 * 120.00143 * 96.10849 * 6 5 3 8 8 H 1.07997 * 120.00166 * 161.80248 * 7 6 5 9 9 C 1.38950 * 119.99449 * 342.07105 * 7 6 5 10 10 N 1.31406 * 120.00413 * 337.03125 * 9 7 6 11 11 Si 1.86801 * 119.99897 * 157.03197 * 9 7 6 12 12 H 1.48505 * 109.47193 * 59.99847 * 11 9 7 13 13 H 1.48497 * 109.47310 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47253 * 300.00315 * 11 9 7 15 15 C 1.34777 * 120.00211 * 276.10183 * 6 5 3 16 16 O 1.21290 * 119.99758 * 0.02562 * 15 6 5 17 17 C 1.50696 * 120.00266 * 180.02562 * 15 6 5 18 18 H 1.09004 * 115.54874 * 34.41631 * 17 15 6 19 19 C 1.53004 * 117.49945 * 248.74700 * 17 15 6 20 20 C 1.53003 * 117.50094 * 180.08579 * 17 15 6 21 21 H 1.08998 * 117.49866 * 0.02562 * 20 17 15 22 22 C 1.50700 * 117.49839 * 214.97959 * 20 17 15 23 23 C 1.38259 * 119.99991 * 299.72490 * 22 20 17 24 24 C 1.38211 * 119.99695 * 179.81337 * 23 22 20 25 25 C 1.38253 * 120.00246 * 0.39796 * 24 23 22 26 26 C 1.38223 * 119.99824 * 359.85747 * 25 24 23 27 27 C 1.50701 * 119.99929 * 179.97438 * 26 25 24 28 28 C 1.38211 * 119.99955 * 120.00275 * 22 20 17 29 29 H 1.09002 * 109.46416 * 60.00484 * 1 2 3 30 30 H 1.09000 * 109.46725 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.46894 * 300.00726 * 1 2 3 32 32 H 1.08998 * 109.46553 * 59.99764 * 5 3 2 33 33 H 1.08995 * 109.46902 * 300.00163 * 5 3 2 34 34 H 0.97004 * 120.00324 * 180.02562 * 10 9 7 35 35 H 1.08994 * 117.49919 * 0.02562 * 19 17 15 36 36 H 1.08999 * 117.49553 * 144.99476 * 19 17 15 37 37 H 1.07992 * 120.00010 * 0.02562 * 23 22 20 38 38 H 1.08001 * 119.99871 * 180.23154 * 24 23 22 39 39 H 1.08001 * 120.00269 * 179.83924 * 25 24 23 40 40 H 1.08990 * 109.47204 * 269.97772 * 27 26 25 41 41 H 1.09004 * 109.46759 * 29.98086 * 27 26 25 42 42 H 1.09002 * 109.46907 * 149.97437 * 27 26 25 43 43 H 1.08006 * 119.99696 * 359.97438 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9818 2.6797 -0.0002 7 6 4.2968 3.3020 1.1801 8 1 4.8723 4.2158 1.1720 9 6 3.8802 2.7540 2.3871 10 7 2.8476 1.9419 2.4185 11 14 4.7880 3.1719 3.9653 12 1 4.7288 4.6375 4.1973 13 1 4.1507 2.4647 5.1051 14 1 6.2058 2.7462 3.8484 15 6 4.0543 3.3604 -1.1611 16 8 3.7753 2.8099 -2.2053 17 6 4.4821 4.8054 -1.1620 18 1 5.2281 5.0752 -0.4144 19 6 3.4266 5.8544 -1.5176 20 6 4.5426 5.5235 -2.5116 21 1 4.2727 4.9509 -3.3989 22 6 5.6287 6.5501 -2.7055 23 6 5.6894 7.6567 -1.8788 24 6 6.6878 8.5963 -2.0542 25 6 7.6208 8.4338 -3.0614 26 6 7.5569 7.3302 -3.8912 27 6 8.5736 7.1534 -4.9894 28 6 6.5606 6.3884 -3.7133 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 3.9564 0.7805 -0.8891 33 1 3.9558 0.7809 0.8908 34 1 2.5566 1.5596 3.2612 35 1 2.4227 5.4995 -1.7505 36 1 3.4782 6.8144 -1.0039 37 1 4.9588 7.7851 -1.0940 38 1 6.7374 9.4588 -1.4061 39 1 8.3994 9.1694 -3.2001 40 1 8.2117 7.6309 -5.8999 41 1 9.5162 7.6111 -4.6890 42 1 8.7283 6.0903 -5.1736 43 1 6.5107 5.5260 -4.3616 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599536329.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:17 Heat of formation + Delta-G solvation = -61.598082 kcal Electronic energy + Delta-G solvation = -26455.358591 eV Core-core repulsion = 22659.934683 eV Total energy + Delta-G solvation = -3795.423908 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.82830 -39.31990 -38.38765 -36.22892 -35.17656 -34.55878 -32.40318 -31.59655 -30.65046 -28.65712 -26.84597 -26.39624 -25.00601 -23.50504 -22.77271 -21.90104 -20.22286 -19.44692 -19.02496 -17.16084 -16.84842 -16.55522 -16.16411 -15.46015 -15.31467 -15.11720 -14.76634 -14.40282 -14.31719 -13.88454 -13.76303 -13.32053 -13.17882 -12.99469 -12.51874 -12.37391 -12.28789 -12.14089 -11.99313 -11.61303 -11.41985 -11.28935 -11.28082 -11.08157 -10.80937 -10.74962 -10.54822 -10.46794 -10.09913 -9.82772 -9.80975 -9.55371 -9.02365 -8.66279 -8.61037 -8.25514 -7.96419 -6.51959 -3.99656 1.45589 1.51804 3.07315 3.17986 3.19568 3.40104 3.67100 3.71723 3.98007 4.06981 4.49493 4.55998 4.89077 4.92271 5.00237 5.05362 5.24489 5.35988 5.43272 5.51650 5.54088 5.56540 5.68123 5.70960 5.78025 5.78581 5.88261 5.95189 6.01853 6.15007 6.18212 6.26154 6.26553 6.42260 6.48857 6.55354 6.62504 6.67501 6.71127 6.90294 7.15073 7.34896 7.45454 7.57759 8.21626 8.96416 9.10762 9.34443 9.74810 10.55792 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014540 B = 0.003763 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.244139 B = 7439.210152 C = 8641.441079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.377 6.377 3 C 0.483 3.517 4 O -0.496 6.496 5 C 0.157 3.843 6 N -0.423 5.423 7 C -0.336 4.336 8 H 0.104 0.896 9 C 0.039 3.961 10 N -0.865 5.865 11 Si 0.922 3.078 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.272 1.272 15 C 0.498 3.502 16 O -0.602 6.602 17 C -0.131 4.131 18 H 0.119 0.881 19 C -0.143 4.143 20 C -0.107 4.107 21 H 0.121 0.879 22 C -0.033 4.033 23 C -0.127 4.127 24 C -0.115 4.115 25 C -0.133 4.133 26 C -0.088 4.088 27 C -0.112 4.112 28 C -0.114 4.114 29 H 0.050 0.950 30 H 0.085 0.915 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.120 0.880 34 H 0.273 0.727 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.125 0.875 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.653 5.962 -6.103 10.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.294 6.294 3 C 0.324 3.676 4 O -0.380 6.380 5 C 0.031 3.969 6 N -0.140 5.140 7 C -0.463 4.463 8 H 0.122 0.878 9 C -0.166 4.166 10 N -0.503 5.503 11 Si 0.749 3.251 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.197 1.197 15 C 0.287 3.713 16 O -0.488 6.488 17 C -0.152 4.152 18 H 0.137 0.863 19 C -0.180 4.180 20 C -0.126 4.126 21 H 0.139 0.861 22 C -0.033 4.033 23 C -0.144 4.144 24 C -0.133 4.133 25 C -0.151 4.151 26 C -0.088 4.088 27 C -0.169 4.169 28 C -0.132 4.132 29 H 0.068 0.932 30 H 0.104 0.896 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.137 0.863 34 H 0.083 0.917 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.142 0.858 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.168 5.866 -6.431 10.123 hybrid contribution -0.044 0.255 1.275 1.301 sum 5.124 6.121 -5.156 9.503 Atomic orbital electron populations 1.22928 0.78694 1.01783 1.01647 1.86452 1.21702 1.35514 1.85759 1.23923 0.92248 0.80610 0.70814 1.90513 1.66413 1.36319 1.44728 1.20432 0.87359 0.85603 1.03492 1.43299 1.56770 1.07817 1.06143 1.19573 1.33555 1.11042 0.82127 0.87804 1.25204 0.94709 0.97196 0.99538 1.69867 1.20501 1.31881 1.28016 0.86066 0.79686 0.78850 0.80540 1.19796 1.20923 1.19724 1.19244 0.81637 0.86725 0.83659 1.90527 1.55863 1.70081 1.32326 1.22071 1.03048 0.92466 0.97598 0.86316 1.22962 0.94907 0.98738 1.01404 1.21120 0.97046 0.99207 0.95200 0.86126 1.19240 0.94950 0.94190 0.94874 1.21116 0.99019 0.94358 0.99947 1.21065 0.95094 0.99074 0.98041 1.20941 0.99804 0.97894 0.96480 1.19863 0.96698 0.94935 0.97339 1.20769 0.97069 1.02504 0.96568 1.20882 0.94659 0.99105 0.98513 0.93169 0.89623 0.92595 0.89894 0.86255 0.91696 0.88227 0.88362 0.85759 0.86297 0.86569 0.91411 0.91790 0.91529 0.86002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.56 101.05 1.07 1.84 16 2 O -0.38 -8.18 10.57 -39.25 -0.41 -8.60 16 3 C 0.48 12.05 6.13 36.01 0.22 12.27 16 4 O -0.50 -13.83 15.66 -18.75 -0.29 -14.12 16 5 C 0.16 3.77 5.14 -5.20 -0.03 3.75 16 6 N -0.42 -10.62 2.18 -116.10 -0.25 -10.87 16 7 C -0.34 -8.36 9.13 -14.93 -0.14 -8.50 16 8 H 0.10 2.44 6.07 -52.49 -0.32 2.12 16 9 C 0.04 0.95 4.82 -17.47 -0.08 0.87 16 10 N -0.87 -22.33 9.35 55.50 0.52 -21.81 16 11 Si 0.92 19.08 29.61 -169.99 -5.03 14.05 16 12 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 13 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 14 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 15 C 0.50 12.18 7.20 -10.99 -0.08 12.10 16 16 O -0.60 -15.87 15.94 5.55 0.09 -15.78 16 17 C -0.13 -2.66 4.87 -91.77 -0.45 -3.11 16 18 H 0.12 2.33 6.64 -51.93 -0.34 1.99 16 19 C -0.14 -2.57 9.57 -26.69 -0.26 -2.82 16 20 C -0.11 -1.89 5.56 -91.73 -0.51 -2.40 16 21 H 0.12 2.26 7.67 -51.93 -0.40 1.86 16 22 C -0.03 -0.50 5.61 -104.62 -0.59 -1.09 16 23 C -0.13 -1.78 9.30 -39.58 -0.37 -2.15 16 24 C -0.11 -1.41 10.05 -39.59 -0.40 -1.81 16 25 C -0.13 -1.57 9.70 -39.58 -0.38 -1.96 16 26 C -0.09 -1.10 5.88 -104.62 -0.62 -1.71 16 27 C -0.11 -1.06 10.01 36.01 0.36 -0.70 16 28 C -0.11 -1.62 9.39 -39.59 -0.37 -1.99 16 29 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 30 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.06 1.02 8.13 -51.93 -0.42 0.60 16 32 H 0.08 1.86 7.61 -51.93 -0.40 1.47 16 33 H 0.12 2.82 6.51 -51.93 -0.34 2.48 16 34 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 35 H 0.10 1.94 8.14 -51.93 -0.42 1.51 16 36 H 0.10 1.51 6.17 -51.93 -0.32 1.19 16 37 H 0.12 1.65 6.02 -52.49 -0.32 1.33 16 38 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 42 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 43 H 0.12 1.64 8.06 -52.48 -0.42 1.22 16 LS Contribution 363.55 15.07 5.48 5.48 Total: -1.00 -31.40 363.55 -8.31 -39.70 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -5.79 Total: 9.34 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -2.61 Total: 2.61 kcal Atomic # 7 Polarization: -32.95 SS G_CDS: 0.27 Total: -32.69 kcal Atomic # 8 Polarization: -37.88 SS G_CDS: -0.62 Total: -38.50 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.40 -8.31 -39.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599536329.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.893 kcal (2) G-P(sol) polarization free energy of solvation -31.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds