Wall clock time and date at job start Tue Mar 31 2020 11:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34227 * 117.00245 * 2 1 4 4 O 1.20827 * 119.99875 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00335 * 179.97438 * 3 2 1 6 6 N 1.46495 * 109.46995 * 179.97438 * 5 3 2 7 7 C 1.37099 * 120.00143 * 96.10849 * 6 5 3 8 8 H 1.07997 * 120.00166 * 161.80248 * 7 6 5 9 9 C 1.38950 * 119.99449 * 342.07105 * 7 6 5 10 10 N 1.31406 * 120.00413 * 337.03125 * 9 7 6 11 11 Si 1.86801 * 119.99897 * 157.03197 * 9 7 6 12 12 H 1.48505 * 109.47193 * 59.99847 * 11 9 7 13 13 H 1.48497 * 109.47310 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47253 * 300.00315 * 11 9 7 15 15 C 1.34777 * 120.00211 * 276.10183 * 6 5 3 16 16 O 1.21290 * 119.99758 * 0.02562 * 15 6 5 17 17 C 1.50696 * 120.00266 * 180.02562 * 15 6 5 18 18 H 1.09004 * 115.54874 * 34.41631 * 17 15 6 19 19 C 1.53004 * 117.49945 * 248.74700 * 17 15 6 20 20 C 1.53003 * 117.50094 * 180.08579 * 17 15 6 21 21 H 1.08998 * 117.49866 * 0.02562 * 20 17 15 22 22 C 1.50700 * 117.49839 * 214.97959 * 20 17 15 23 23 C 1.38259 * 119.99991 * 299.72490 * 22 20 17 24 24 C 1.38211 * 119.99695 * 179.81337 * 23 22 20 25 25 C 1.38253 * 120.00246 * 0.39796 * 24 23 22 26 26 C 1.38223 * 119.99824 * 359.85747 * 25 24 23 27 27 C 1.50701 * 119.99929 * 179.97438 * 26 25 24 28 28 C 1.38211 * 119.99955 * 120.00275 * 22 20 17 29 29 H 1.09002 * 109.46416 * 60.00484 * 1 2 3 30 30 H 1.09000 * 109.46725 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.46894 * 300.00726 * 1 2 3 32 32 H 1.08998 * 109.46553 * 59.99764 * 5 3 2 33 33 H 1.08995 * 109.46902 * 300.00163 * 5 3 2 34 34 H 0.97004 * 120.00324 * 180.02562 * 10 9 7 35 35 H 1.08994 * 117.49919 * 0.02562 * 19 17 15 36 36 H 1.08999 * 117.49553 * 144.99476 * 19 17 15 37 37 H 1.07992 * 120.00010 * 0.02562 * 23 22 20 38 38 H 1.08001 * 119.99871 * 180.23154 * 24 23 22 39 39 H 1.08001 * 120.00269 * 179.83924 * 25 24 23 40 40 H 1.08990 * 109.47204 * 269.97772 * 27 26 25 41 41 H 1.09004 * 109.46759 * 29.98086 * 27 26 25 42 42 H 1.09002 * 109.46907 * 149.97437 * 27 26 25 43 43 H 1.08006 * 119.99696 * 359.97438 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9818 2.6797 -0.0002 7 6 4.2968 3.3020 1.1801 8 1 4.8723 4.2158 1.1720 9 6 3.8802 2.7540 2.3871 10 7 2.8476 1.9419 2.4185 11 14 4.7880 3.1719 3.9653 12 1 4.7288 4.6375 4.1973 13 1 4.1507 2.4647 5.1051 14 1 6.2058 2.7462 3.8484 15 6 4.0543 3.3604 -1.1611 16 8 3.7753 2.8099 -2.2053 17 6 4.4821 4.8054 -1.1620 18 1 5.2281 5.0752 -0.4144 19 6 3.4266 5.8544 -1.5176 20 6 4.5426 5.5235 -2.5116 21 1 4.2727 4.9509 -3.3989 22 6 5.6287 6.5501 -2.7055 23 6 5.6894 7.6567 -1.8788 24 6 6.6878 8.5963 -2.0542 25 6 7.6208 8.4338 -3.0614 26 6 7.5569 7.3302 -3.8912 27 6 8.5736 7.1534 -4.9894 28 6 6.5606 6.3884 -3.7133 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 3.9564 0.7805 -0.8891 33 1 3.9558 0.7809 0.8908 34 1 2.5566 1.5596 3.2612 35 1 2.4227 5.4995 -1.7505 36 1 3.4782 6.8144 -1.0039 37 1 4.9588 7.7851 -1.0940 38 1 6.7374 9.4588 -1.4061 39 1 8.3994 9.1694 -3.2001 40 1 8.2117 7.6309 -5.8999 41 1 9.5162 7.6111 -4.6890 42 1 8.7283 6.0903 -5.1736 43 1 6.5107 5.5260 -4.3616 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599536329.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:16 Heat of formation + Delta-G solvation = -77.083058 kcal Electronic energy + Delta-G solvation = -26456.030070 eV Core-core repulsion = 22659.934683 eV Total energy + Delta-G solvation = -3796.095387 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.48985 -40.82770 -39.97288 -37.78284 -36.97795 -36.48964 -33.52268 -33.34559 -31.76105 -30.44452 -28.03655 -27.68263 -26.87413 -24.87414 -24.29066 -22.93757 -22.00945 -21.05061 -20.51481 -18.87096 -18.55315 -18.34291 -17.51926 -17.28636 -16.99038 -16.50920 -16.23453 -15.94476 -15.77800 -15.36457 -14.90980 -14.74385 -14.56884 -14.27162 -14.07187 -13.99444 -13.73298 -13.27507 -13.14468 -13.09201 -12.96845 -12.88793 -12.74403 -12.56325 -12.40693 -12.13841 -12.13191 -11.77873 -11.59246 -11.52561 -11.45579 -11.27208 -10.95191 -10.54219 -9.90899 -9.61308 -9.35991 -8.39677 -5.94189 0.41659 0.52059 1.39383 1.49570 1.59170 1.63430 1.74817 2.13241 2.32463 2.63402 2.86137 3.01838 3.26062 3.66925 3.90978 3.95488 4.06682 4.10901 4.19691 4.26084 4.28742 4.32773 4.33747 4.39499 4.52500 4.55331 4.58342 4.63759 4.69978 4.77178 4.87370 4.90636 5.01793 5.08669 5.10770 5.21565 5.35458 5.44698 5.59973 5.62204 5.69336 5.72799 5.78586 6.17259 6.30588 7.05247 7.18880 7.44446 7.84816 8.67944 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014540 B = 0.003763 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.244139 B = 7439.210152 C = 8641.441079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.377 6.377 3 C 0.485 3.515 4 O -0.533 6.533 5 C 0.152 3.848 6 N -0.433 5.433 7 C -0.355 4.355 8 H 0.114 0.886 9 C -0.001 4.001 10 N -0.893 5.893 11 Si 0.993 3.007 12 H -0.267 1.267 13 H -0.286 1.286 14 H -0.263 1.263 15 C 0.483 3.517 16 O -0.633 6.633 17 C -0.150 4.150 18 H 0.126 0.874 19 C -0.134 4.134 20 C -0.085 4.085 21 H 0.101 0.899 22 C -0.054 4.054 23 C -0.137 4.137 24 C -0.115 4.115 25 C -0.130 4.130 26 C -0.092 4.092 27 C -0.112 4.112 28 C -0.131 4.131 29 H 0.049 0.951 30 H 0.135 0.865 31 H 0.045 0.955 32 H 0.091 0.909 33 H 0.120 0.880 34 H 0.272 0.728 35 H 0.078 0.922 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.338 7.665 -5.573 11.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.294 6.294 3 C 0.328 3.672 4 O -0.421 6.421 5 C 0.027 3.973 6 N -0.150 5.150 7 C -0.481 4.481 8 H 0.132 0.868 9 C -0.203 4.203 10 N -0.531 5.531 11 Si 0.817 3.183 12 H -0.192 1.192 13 H -0.212 1.212 14 H -0.188 1.188 15 C 0.275 3.725 16 O -0.521 6.521 17 C -0.171 4.171 18 H 0.143 0.857 19 C -0.172 4.172 20 C -0.103 4.103 21 H 0.119 0.881 22 C -0.054 4.054 23 C -0.155 4.155 24 C -0.132 4.132 25 C -0.148 4.148 26 C -0.092 4.092 27 C -0.168 4.168 28 C -0.149 4.149 29 H 0.068 0.932 30 H 0.153 0.847 31 H 0.064 0.936 32 H 0.108 0.892 33 H 0.138 0.862 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.164 0.836 39 H 0.165 0.835 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.858 7.550 -5.907 11.787 hybrid contribution -0.616 -0.316 1.043 1.252 sum 6.242 7.234 -4.864 10.722 Atomic orbital electron populations 1.23298 0.76127 1.04902 1.01187 1.86420 1.24175 1.33726 1.85070 1.24028 0.92561 0.80856 0.69767 1.90481 1.67256 1.37661 1.46705 1.20508 0.87321 0.85781 1.03726 1.43540 1.56654 1.08186 1.06584 1.19953 1.34020 1.11792 0.82340 0.86848 1.26088 0.94914 0.96914 1.02396 1.69979 1.21603 1.32876 1.28617 0.84987 0.78534 0.78645 0.76171 1.19219 1.21164 1.18755 1.19976 0.81165 0.88278 0.83121 1.90480 1.57299 1.71140 1.33218 1.21987 1.04576 0.90422 1.00076 0.85668 1.23018 0.93608 0.98985 1.01552 1.20986 0.97480 0.98684 0.93183 0.88078 1.19138 0.95123 0.94538 0.96633 1.21243 0.99961 0.94371 0.99883 1.21411 0.94223 0.99254 0.98354 1.21360 1.00011 0.97922 0.95464 1.20216 0.96444 0.94463 0.98062 1.20827 0.97016 1.02901 0.96060 1.21011 0.95427 0.99913 0.98561 0.93177 0.84690 0.93567 0.89157 0.86219 0.91821 0.90315 0.85372 0.85307 0.83569 0.83518 0.90176 0.89968 0.91617 0.86421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.32 10.56 113.37 1.20 2.52 16 2 O -0.38 -16.50 10.57 -51.39 -0.54 -17.04 16 3 C 0.49 24.88 6.13 71.24 0.44 25.32 16 4 O -0.53 -30.78 15.66 21.96 0.34 -30.44 16 5 C 0.15 7.57 5.14 85.63 0.44 8.01 16 6 N -0.43 -22.40 2.18 -639.62 -1.39 -23.79 16 7 C -0.35 -17.84 9.13 84.04 0.77 -17.08 16 8 H 0.11 5.34 6.07 -2.91 -0.02 5.32 16 9 C 0.00 -0.04 4.82 84.93 0.41 0.37 16 10 N -0.89 -46.64 9.35 21.66 0.20 -46.44 16 11 Si 0.99 38.74 29.61 68.60 2.03 40.77 16 12 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 13 H -0.29 -11.18 7.11 99.48 0.71 -10.47 16 14 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 15 C 0.48 24.61 7.20 87.66 0.63 25.24 16 16 O -0.63 -34.97 15.94 -3.06 -0.05 -35.02 16 17 C -0.15 -6.25 4.87 -11.54 -0.06 -6.31 16 18 H 0.13 4.98 6.64 -2.39 -0.02 4.96 16 19 C -0.13 -4.93 9.57 30.62 0.29 -4.63 16 20 C -0.08 -3.07 5.56 -11.51 -0.06 -3.13 16 21 H 0.10 4.02 7.67 -2.39 -0.02 4.00 16 22 C -0.05 -1.66 5.61 -19.87 -0.11 -1.77 16 23 C -0.14 -3.62 9.30 22.27 0.21 -3.41 16 24 C -0.11 -2.47 10.05 22.27 0.22 -2.25 16 25 C -0.13 -2.62 9.70 22.27 0.22 -2.41 16 26 C -0.09 -2.08 5.88 -19.87 -0.12 -2.20 16 27 C -0.11 -1.81 10.01 71.24 0.71 -1.09 16 28 C -0.13 -3.67 9.39 22.27 0.21 -3.47 16 29 H 0.05 1.72 8.13 -2.39 -0.02 1.70 16 30 H 0.14 3.28 8.14 -2.39 -0.02 3.26 16 31 H 0.05 1.68 8.13 -2.39 -0.02 1.66 16 32 H 0.09 4.23 7.61 -2.39 -0.02 4.22 16 33 H 0.12 5.84 6.51 -2.39 -0.02 5.82 16 34 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16 35 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 36 H 0.13 3.85 6.17 -2.39 -0.01 3.83 16 37 H 0.13 3.18 6.02 -2.91 -0.02 3.17 16 38 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 39 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 40 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.08 1.04 8.09 -2.39 -0.02 1.02 16 42 H 0.06 1.08 8.09 -2.39 -0.02 1.06 16 43 H 0.12 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -69.60 363.55 7.01 -62.59 By element: Atomic # 1 Polarization: 34.63 SS G_CDS: 1.03 Total: 35.65 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: 5.39 Total: 13.71 kcal Atomic # 7 Polarization: -69.04 SS G_CDS: -1.19 Total: -70.23 kcal Atomic # 8 Polarization: -82.25 SS G_CDS: -0.25 Total: -82.50 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 2.03 Total: 40.77 kcal Total: -69.60 7.01 -62.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599536329.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.496 kcal (2) G-P(sol) polarization free energy of solvation -69.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds