Wall clock time and date at job start Tue Mar 31 2020 11:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37765 * 119.89986 * 2 1 4 4 C 1.38670 * 119.97937 * 180.02562 * 3 2 1 5 5 C 1.37251 * 120.59455 * 359.97438 * 4 3 2 6 6 C 1.41055 * 120.43203 * 0.02562 * 5 4 3 7 7 N 1.34821 * 128.73468 * 179.97438 * 6 5 4 8 8 C 1.28899 * 117.87608 * 180.02562 * 7 6 5 9 9 N 1.37995 * 124.81361 * 179.97438 * 8 7 6 10 10 C 1.46961 * 110.99780 * 0.02562 * 9 8 7 11 11 C 1.53059 * 109.36302 * 183.18722 * 10 9 8 12 12 N 1.46952 * 109.36370 * 301.60193 * 11 10 9 13 13 C 1.46906 * 110.99889 * 183.18679 * 12 11 10 14 14 C 1.50701 * 109.46965 * 170.00017 * 13 12 11 15 15 H 1.08005 * 120.00268 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99915 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00548 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99807 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47278 * 90.00449 * 18 16 14 20 20 H 1.48502 * 109.46981 * 210.00137 * 18 16 14 21 21 H 1.48498 * 109.47192 * 330.00330 * 18 16 14 22 22 C 1.46961 * 110.88410 * 59.32054 * 12 11 10 23 23 C 1.46955 * 111.00222 * 123.82231 * 9 8 7 24 24 S 1.75807 * 110.37304 * 0.22552 * 8 7 6 25 25 C 1.39213 * 119.89760 * 180.02562 * 2 1 3 26 26 H 1.08999 * 109.47273 * 269.98071 * 1 2 3 27 27 H 1.09003 * 109.47218 * 29.98201 * 1 2 3 28 28 H 1.08998 * 109.47553 * 149.97749 * 1 2 3 29 29 H 1.08000 * 120.00798 * 0.03923 * 3 2 1 30 30 H 1.07999 * 119.70304 * 179.97438 * 4 3 2 31 31 H 1.08001 * 119.78151 * 180.02562 * 5 4 3 32 32 H 1.09003 * 109.48904 * 63.22355 * 10 9 8 33 33 H 1.08997 * 109.51213 * 303.16641 * 10 9 8 34 34 H 1.08999 * 109.48651 * 181.63251 * 11 10 9 35 35 H 1.08996 * 109.48556 * 61.57139 * 11 10 9 36 36 H 1.08993 * 109.47164 * 289.99960 * 13 12 11 37 37 H 1.08996 * 109.46920 * 49.99994 * 13 12 11 38 38 H 0.96999 * 120.00406 * 179.97438 * 17 16 14 39 39 H 1.09003 * 109.48904 * 60.64354 * 22 12 11 40 40 H 1.09002 * 109.49205 * 180.70887 * 22 12 11 41 41 H 1.09008 * 109.48713 * 296.78113 * 23 9 8 42 42 H 1.09002 * 109.48661 * 56.82076 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1937 1.1943 0.0000 4 6 3.5804 1.1962 -0.0005 5 6 4.2806 0.0157 -0.0005 6 6 3.5990 -1.2192 -0.0005 7 7 4.1121 -2.4660 -0.0010 8 6 3.2879 -3.4570 -0.0014 9 7 3.6551 -4.7871 -0.0024 10 6 5.1178 -4.9296 -0.0024 11 6 5.4831 -6.4137 -0.0838 12 7 4.8874 -7.1254 1.0556 13 6 5.2783 -8.5415 1.0545 14 6 4.8591 -9.1793 2.3539 15 1 4.3533 -8.5914 3.1056 16 6 5.1223 -10.5130 2.5836 17 7 4.7561 -11.0699 3.7174 18 14 5.9978 -11.5296 1.2838 19 1 7.4646 -11.4582 1.5045 20 1 5.5516 -12.9429 1.3772 21 1 5.6734 -10.9960 -0.0635 22 6 3.4247 -6.9829 1.0555 23 6 3.0595 -5.4988 1.1370 24 16 1.6294 -2.8736 -0.0077 25 6 2.2008 -1.2069 -0.0005 26 1 -0.3634 -0.0003 1.0276 27 1 -0.3634 0.8902 -0.5136 28 1 -0.3634 -0.8897 -0.5142 29 1 1.6522 2.1287 0.0006 30 1 4.1142 2.1350 -0.0010 31 1 5.3604 0.0326 -0.0005 32 1 5.5245 -4.5049 0.9154 33 1 5.5347 -4.4048 -0.8619 34 1 6.5671 -6.5235 -0.0547 35 1 5.0998 -6.8320 -1.0145 36 1 4.7901 -9.0525 0.2248 37 1 6.3598 -8.6197 0.9436 38 1 4.9409 -12.0083 3.8788 39 1 3.0180 -7.4077 0.1378 40 1 3.0081 -7.5077 1.9153 41 1 3.4430 -5.0805 2.0677 42 1 1.9755 -5.3887 1.1082 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601261558.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:38 Heat of formation + Delta-G solvation = 74.351661 kcal Electronic energy + Delta-G solvation = -23457.006430 eV Core-core repulsion = 20142.523368 eV Total energy + Delta-G solvation = -3314.483063 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.58014 -39.34990 -37.09338 -34.96865 -32.90770 -32.46899 -30.83494 -29.85708 -28.32837 -27.35135 -25.74367 -23.85077 -23.58310 -21.90973 -21.46195 -20.72297 -19.42533 -18.20147 -17.19679 -16.73755 -16.52881 -15.61051 -15.40342 -14.89818 -14.62247 -14.56573 -14.40739 -14.16415 -13.86471 -13.65609 -13.45096 -13.13064 -12.94048 -12.40590 -12.36137 -12.18024 -12.01748 -11.81901 -11.53179 -11.17431 -11.10908 -10.94243 -10.83976 -10.54182 -10.29352 -10.09356 -9.91571 -9.76461 -9.58243 -9.32421 -8.61349 -8.20733 -8.09438 -7.51015 -6.09809 -4.08016 0.33892 0.93169 0.95387 1.57110 2.17226 3.25843 3.33632 3.35197 3.36112 3.54798 4.20035 4.38063 4.41876 4.59702 4.61149 4.88459 4.94647 5.01757 5.18508 5.20990 5.25088 5.26195 5.31173 5.36315 5.50864 5.56252 5.60211 5.72309 5.77717 5.89028 6.01084 6.03526 6.16292 6.18768 6.30778 6.40114 6.46418 6.57124 6.78274 6.81554 6.90978 7.50763 7.59937 7.77692 7.91437 8.58420 8.97240 9.51483 11.03041 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.032706 B = 0.002691 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.903268 B =10400.969998 C =10835.959574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.032 4.032 3 C -0.121 4.121 4 C -0.099 4.099 5 C -0.084 4.084 6 C 0.116 3.884 7 N -0.518 5.518 8 C 0.312 3.688 9 N -0.451 5.451 10 C 0.074 3.926 11 C 0.050 3.950 12 N -0.530 5.530 13 C 0.163 3.837 14 C -0.512 4.512 15 H 0.081 0.919 16 C 0.070 3.930 17 N -0.899 5.899 18 Si 0.875 3.125 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.268 1.268 22 C 0.066 3.934 23 C 0.060 3.940 24 S 0.069 5.931 25 C -0.189 4.189 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.131 0.869 30 H 0.132 0.868 31 H 0.132 0.868 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.035 0.965 36 H -0.008 1.008 37 H 0.027 0.973 38 H 0.264 0.736 39 H 0.036 0.964 40 H 0.104 0.896 41 H 0.064 0.936 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.688 23.535 -9.272 26.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.037 4.037 3 C -0.143 4.143 4 C -0.120 4.120 5 C -0.105 4.105 6 C -0.005 4.005 7 N -0.239 5.239 8 C -0.064 4.064 9 N -0.171 5.171 10 C -0.055 4.055 11 C -0.079 4.079 12 N -0.255 5.255 13 C 0.037 3.963 14 C -0.551 4.551 15 H 0.099 0.901 16 C -0.132 4.132 17 N -0.538 5.538 18 Si 0.702 3.298 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.192 1.192 22 C -0.062 4.062 23 C -0.067 4.067 24 S 0.322 5.678 25 C -0.308 4.308 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.149 0.851 30 H 0.150 0.850 31 H 0.150 0.850 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.053 0.947 36 H 0.009 0.991 37 H 0.045 0.955 38 H 0.074 0.926 39 H 0.054 0.946 40 H 0.123 0.877 41 H 0.082 0.918 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.092 22.585 -9.167 25.385 hybrid contribution 1.005 -0.063 -0.867 1.329 sum -6.087 22.521 -10.034 25.395 Atomic orbital electron populations 1.20884 0.90605 1.03151 1.02913 1.19093 0.95797 0.90194 0.98623 1.20912 0.94234 0.96778 1.02340 1.20893 0.94136 0.97610 0.99398 1.20633 1.00106 0.88865 1.00891 1.18954 0.89148 0.91276 1.01116 1.66792 1.35943 0.97771 1.23401 1.25465 0.91798 0.93118 0.95991 1.59021 1.13731 1.03179 1.41180 1.22247 0.82742 0.97435 1.03034 1.22233 1.00226 0.92094 0.93367 1.62150 1.07870 1.15658 1.39785 1.20171 0.95813 0.82854 0.97470 1.21003 1.38552 0.94771 1.00733 0.90111 1.24893 0.95426 0.97643 0.95275 1.69886 1.47318 1.12738 1.23810 0.86869 0.80436 0.79790 0.82710 1.20115 1.21177 1.19238 1.22080 0.89715 0.91906 1.02516 1.22633 0.98874 0.95627 0.89516 1.84879 1.08103 0.96782 1.78079 1.23429 0.97085 0.97212 1.13102 0.90498 0.90767 0.91500 0.85089 0.84996 0.85027 0.91691 0.89579 0.89883 0.94700 0.99077 0.95545 0.92591 0.94569 0.87745 0.91780 0.89842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 9.89 36.00 0.36 -0.53 16 2 C -0.03 -0.32 5.89 -104.44 -0.62 -0.94 16 3 C -0.12 -1.02 9.69 -39.59 -0.38 -1.41 16 4 C -0.10 -0.86 9.99 -39.78 -0.40 -1.25 16 5 C -0.08 -0.93 10.10 -38.87 -0.39 -1.33 16 6 C 0.12 1.60 6.94 -84.89 -0.59 1.01 16 7 N -0.52 -7.98 9.47 -11.16 -0.11 -8.09 16 8 C 0.31 4.66 6.86 -88.91 -0.61 4.05 16 9 N -0.45 -6.92 4.76 -174.09 -0.83 -7.75 16 10 C 0.07 1.14 4.92 -3.76 -0.02 1.12 16 11 C 0.05 0.84 5.61 -3.77 -0.02 0.82 16 12 N -0.53 -10.71 4.70 -235.91 -1.11 -11.82 16 13 C 0.16 3.83 3.79 -4.97 -0.02 3.81 16 14 C -0.51 -14.11 9.03 -34.44 -0.31 -14.42 16 15 H 0.08 2.41 7.38 -52.48 -0.39 2.02 16 16 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 17 N -0.90 -27.03 13.96 55.43 0.77 -26.25 16 18 Si 0.87 21.09 27.47 -169.99 -4.67 16.43 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 22 C 0.07 1.21 5.43 -3.77 -0.02 1.19 16 23 C 0.06 0.92 5.47 -3.77 -0.02 0.90 16 24 S 0.07 0.87 21.93 -107.50 -2.36 -1.49 16 25 C -0.19 -2.40 6.31 -38.63 -0.24 -2.64 16 26 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 28 H 0.07 0.53 7.64 -51.93 -0.40 0.13 16 29 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 30 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 31 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.09 1.25 7.97 -51.93 -0.41 0.83 16 34 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 35 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 36 H -0.01 -0.20 7.18 -51.93 -0.37 -0.57 16 37 H 0.03 0.62 7.45 -51.93 -0.39 0.24 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.10 2.07 6.79 -51.93 -0.35 1.72 16 41 H 0.06 1.03 8.14 -51.92 -0.42 0.60 16 42 H 0.08 1.12 7.46 -51.93 -0.39 0.73 16 LS Contribution 349.63 15.07 5.27 5.27 Total: -1.00 -31.08 349.63 -12.50 -43.58 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -6.08 Total: -2.12 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -3.38 Total: -7.76 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: -1.27 Total: -53.90 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.43 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -2.36 Total: -1.49 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.08 -12.50 -43.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601261558.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.931 kcal (2) G-P(sol) polarization free energy of solvation -31.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds