Wall clock time and date at job start Tue Mar 31 2020 11:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37765 * 119.89986 * 2 1 4 4 C 1.38670 * 119.97937 * 180.02562 * 3 2 1 5 5 C 1.37251 * 120.59455 * 359.97438 * 4 3 2 6 6 C 1.41055 * 120.43203 * 0.02562 * 5 4 3 7 7 N 1.34821 * 128.73468 * 179.97438 * 6 5 4 8 8 C 1.28899 * 117.87608 * 180.02562 * 7 6 5 9 9 N 1.37995 * 124.81361 * 179.97438 * 8 7 6 10 10 C 1.46961 * 110.99780 * 0.02562 * 9 8 7 11 11 C 1.53059 * 109.36302 * 183.18722 * 10 9 8 12 12 N 1.46952 * 109.36370 * 301.60193 * 11 10 9 13 13 C 1.46906 * 110.99889 * 183.18679 * 12 11 10 14 14 C 1.50701 * 109.46965 * 170.00017 * 13 12 11 15 15 H 1.08005 * 120.00268 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99915 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00548 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99807 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47278 * 90.00449 * 18 16 14 20 20 H 1.48502 * 109.46981 * 210.00137 * 18 16 14 21 21 H 1.48498 * 109.47192 * 330.00330 * 18 16 14 22 22 C 1.46961 * 110.88410 * 59.32054 * 12 11 10 23 23 C 1.46955 * 111.00222 * 123.82231 * 9 8 7 24 24 S 1.75807 * 110.37304 * 0.22552 * 8 7 6 25 25 C 1.39213 * 119.89760 * 180.02562 * 2 1 3 26 26 H 1.08999 * 109.47273 * 269.98071 * 1 2 3 27 27 H 1.09003 * 109.47218 * 29.98201 * 1 2 3 28 28 H 1.08998 * 109.47553 * 149.97749 * 1 2 3 29 29 H 1.08000 * 120.00798 * 0.03923 * 3 2 1 30 30 H 1.07999 * 119.70304 * 179.97438 * 4 3 2 31 31 H 1.08001 * 119.78151 * 180.02562 * 5 4 3 32 32 H 1.09003 * 109.48904 * 63.22355 * 10 9 8 33 33 H 1.08997 * 109.51213 * 303.16641 * 10 9 8 34 34 H 1.08999 * 109.48651 * 181.63251 * 11 10 9 35 35 H 1.08996 * 109.48556 * 61.57139 * 11 10 9 36 36 H 1.08993 * 109.47164 * 289.99960 * 13 12 11 37 37 H 1.08996 * 109.46920 * 49.99994 * 13 12 11 38 38 H 0.96999 * 120.00406 * 179.97438 * 17 16 14 39 39 H 1.09003 * 109.48904 * 60.64354 * 22 12 11 40 40 H 1.09002 * 109.49205 * 180.70887 * 22 12 11 41 41 H 1.09008 * 109.48713 * 296.78113 * 23 9 8 42 42 H 1.09002 * 109.48661 * 56.82076 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1937 1.1943 0.0000 4 6 3.5804 1.1962 -0.0005 5 6 4.2806 0.0157 -0.0005 6 6 3.5990 -1.2192 -0.0005 7 7 4.1121 -2.4660 -0.0010 8 6 3.2879 -3.4570 -0.0014 9 7 3.6551 -4.7871 -0.0024 10 6 5.1178 -4.9296 -0.0024 11 6 5.4831 -6.4137 -0.0838 12 7 4.8874 -7.1254 1.0556 13 6 5.2783 -8.5415 1.0545 14 6 4.8591 -9.1793 2.3539 15 1 4.3533 -8.5914 3.1056 16 6 5.1223 -10.5130 2.5836 17 7 4.7561 -11.0699 3.7174 18 14 5.9978 -11.5296 1.2838 19 1 7.4646 -11.4582 1.5045 20 1 5.5516 -12.9429 1.3772 21 1 5.6734 -10.9960 -0.0635 22 6 3.4247 -6.9829 1.0555 23 6 3.0595 -5.4988 1.1370 24 16 1.6294 -2.8736 -0.0077 25 6 2.2008 -1.2069 -0.0005 26 1 -0.3634 -0.0003 1.0276 27 1 -0.3634 0.8902 -0.5136 28 1 -0.3634 -0.8897 -0.5142 29 1 1.6522 2.1287 0.0006 30 1 4.1142 2.1350 -0.0010 31 1 5.3604 0.0326 -0.0005 32 1 5.5245 -4.5049 0.9154 33 1 5.5347 -4.4048 -0.8619 34 1 6.5671 -6.5235 -0.0547 35 1 5.0998 -6.8320 -1.0145 36 1 4.7901 -9.0525 0.2248 37 1 6.3598 -8.6197 0.9436 38 1 4.9409 -12.0083 3.8788 39 1 3.0180 -7.4077 0.1378 40 1 3.0081 -7.5077 1.9153 41 1 3.4430 -5.0805 2.0677 42 1 1.9755 -5.3887 1.1082 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601261558.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:38 Heat of formation + Delta-G solvation = 54.479915 kcal Electronic energy + Delta-G solvation = -23457.868134 eV Core-core repulsion = 20142.523368 eV Total energy + Delta-G solvation = -3315.344766 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.57790 -40.48862 -38.23300 -36.31016 -34.53266 -33.60427 -32.17811 -31.15473 -29.73602 -28.05426 -27.28310 -24.96296 -24.82274 -23.30195 -22.60679 -21.93606 -20.75220 -19.13372 -18.96694 -18.14220 -17.45136 -16.73899 -16.45096 -16.35837 -16.05736 -15.77671 -15.67900 -15.36210 -15.23213 -14.87528 -14.44522 -14.30765 -14.07548 -13.68796 -13.60728 -13.29155 -13.05513 -12.94557 -12.75539 -12.61007 -12.43202 -12.30756 -12.24745 -11.95216 -11.82943 -11.73318 -11.41035 -10.98147 -10.82511 -10.77477 -10.63013 -9.17106 -9.11819 -9.00338 -8.27901 -6.31611 -0.59769 -0.03549 0.15653 0.61995 1.24709 1.36509 1.37381 1.47865 2.29645 2.34972 2.70116 3.03093 3.10223 3.19205 3.63877 3.76005 3.92723 3.96368 4.05742 4.17174 4.18105 4.28669 4.29919 4.42441 4.48883 4.62035 4.70019 4.72948 4.75374 4.81248 4.82865 4.89604 4.97915 5.04761 5.11469 5.18065 5.28692 5.37560 5.44886 5.51725 5.63072 5.84155 5.94084 6.25061 6.57668 6.58962 6.74325 7.32104 8.88357 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.032706 B = 0.002691 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.903268 B =10400.969998 C =10835.959574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.045 4.045 3 C -0.108 4.108 4 C -0.090 4.090 5 C -0.098 4.098 6 C 0.076 3.924 7 N -0.533 5.533 8 C 0.285 3.715 9 N -0.454 5.454 10 C 0.085 3.915 11 C 0.054 3.946 12 N -0.547 5.547 13 C 0.173 3.827 14 C -0.516 4.516 15 H 0.041 0.959 16 C 0.010 3.990 17 N -0.947 5.947 18 Si 0.946 3.054 19 H -0.266 1.266 20 H -0.283 1.283 21 H -0.251 1.251 22 C 0.071 3.929 23 C 0.073 3.927 24 S 0.085 5.915 25 C -0.203 4.203 26 H 0.084 0.916 27 H 0.099 0.901 28 H 0.058 0.942 29 H 0.170 0.830 30 H 0.169 0.831 31 H 0.137 0.863 32 H 0.050 0.950 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.040 0.960 36 H -0.008 1.008 37 H 0.032 0.968 38 H 0.267 0.733 39 H 0.039 0.961 40 H 0.078 0.922 41 H 0.052 0.948 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.916 26.289 -11.267 29.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.050 4.050 3 C -0.129 4.129 4 C -0.110 4.110 5 C -0.119 4.119 6 C -0.044 4.044 7 N -0.254 5.254 8 C -0.090 4.090 9 N -0.174 5.174 10 C -0.043 4.043 11 C -0.075 4.075 12 N -0.272 5.272 13 C 0.046 3.954 14 C -0.555 4.555 15 H 0.059 0.941 16 C -0.188 4.188 17 N -0.588 5.588 18 Si 0.769 3.231 19 H -0.191 1.191 20 H -0.209 1.209 21 H -0.174 1.174 22 C -0.057 4.057 23 C -0.054 4.054 24 S 0.338 5.662 25 C -0.322 4.322 26 H 0.102 0.898 27 H 0.118 0.882 28 H 0.077 0.923 29 H 0.187 0.813 30 H 0.186 0.814 31 H 0.155 0.845 32 H 0.069 0.931 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.059 0.941 36 H 0.010 0.990 37 H 0.050 0.950 38 H 0.076 0.924 39 H 0.057 0.943 40 H 0.097 0.903 41 H 0.070 0.930 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.324 25.384 -11.177 28.686 hybrid contribution 0.998 -0.628 -0.182 1.193 sum -6.326 24.755 -11.359 27.962 Atomic orbital electron populations 1.20944 0.88813 1.04037 1.03644 1.19549 0.97285 0.89831 0.98343 1.21444 0.94369 0.97583 0.99503 1.21359 0.94545 0.98014 0.97083 1.20932 1.00740 0.88910 1.01338 1.19322 0.90155 0.91437 1.03476 1.66727 1.37124 0.98672 1.22840 1.25450 0.93082 0.92676 0.97817 1.59040 1.13384 1.03987 1.41028 1.22080 0.83268 0.96244 1.02748 1.22278 1.00650 0.92440 0.92126 1.62037 1.09151 1.13946 1.42032 1.19928 0.95880 0.84603 0.94977 1.21230 1.37771 0.94869 1.01605 0.94119 1.25814 0.96350 0.99030 0.97595 1.70041 1.49171 1.13301 1.26239 0.85735 0.79323 0.77764 0.80231 1.19075 1.20878 1.17433 1.21964 0.88647 0.93753 1.01383 1.22432 0.99998 0.93553 0.89422 1.84650 1.06386 0.97274 1.77864 1.23704 0.96967 0.97838 1.13718 0.89751 0.88240 0.92304 0.81297 0.81404 0.84524 0.93115 0.88495 0.88825 0.94129 0.99028 0.94952 0.92423 0.94283 0.90345 0.93008 0.87877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.43 9.89 71.23 0.70 -0.72 16 2 C -0.04 -0.79 5.89 -19.74 -0.12 -0.91 16 3 C -0.11 -1.38 9.69 22.26 0.22 -1.17 16 4 C -0.09 -1.22 9.99 22.14 0.22 -1.00 16 5 C -0.10 -2.03 10.10 22.73 0.23 -1.80 16 6 C 0.08 2.05 6.94 39.76 0.28 2.33 16 7 N -0.53 -16.53 9.47 -189.23 -1.79 -18.33 16 8 C 0.29 8.57 6.86 179.75 1.23 9.80 16 9 N -0.45 -14.02 4.76 -704.71 -3.36 -17.38 16 10 C 0.09 2.63 4.92 86.31 0.42 3.06 16 11 C 0.05 1.78 5.61 86.31 0.48 2.26 16 12 N -0.55 -22.45 4.70 -900.27 -4.23 -26.68 16 13 C 0.17 8.15 3.79 85.56 0.32 8.48 16 14 C -0.52 -29.40 9.03 25.60 0.23 -29.17 16 15 H 0.04 2.58 7.38 -2.91 -0.02 2.55 16 16 C 0.01 0.55 5.47 84.65 0.46 1.02 16 17 N -0.95 -58.72 13.96 21.45 0.30 -58.42 16 18 Si 0.95 43.55 27.47 68.60 1.88 45.44 16 19 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 21 H -0.25 -10.77 6.54 99.48 0.65 -10.12 16 22 C 0.07 2.68 5.43 86.31 0.47 3.15 16 23 C 0.07 2.29 5.47 86.31 0.47 2.76 16 24 S 0.09 2.14 21.93 -56.49 -1.24 0.90 16 25 C -0.20 -4.95 6.31 22.89 0.14 -4.81 16 26 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.10 0.70 8.08 -2.39 -0.02 0.68 16 28 H 0.06 0.81 7.64 -2.39 -0.02 0.80 16 29 H 0.17 0.90 8.06 -2.91 -0.02 0.87 16 30 H 0.17 1.06 8.06 -2.91 -0.02 1.04 16 31 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 32 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.10 2.78 7.97 -2.39 -0.02 2.76 16 34 H 0.09 2.88 8.07 -2.39 -0.02 2.86 16 35 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 36 H -0.01 -0.37 7.18 -2.39 -0.02 -0.39 16 37 H 0.03 1.49 7.45 -2.39 -0.02 1.47 16 38 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 39 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.08 3.33 6.79 -2.39 -0.02 3.31 16 41 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 42 H 0.10 2.80 7.46 -2.39 -0.02 2.78 16 Total: -1.00 -69.87 349.63 -1.70 -71.57 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: 0.96 Total: 9.63 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: 5.78 Total: -6.73 kcal Atomic # 7 Polarization: -111.73 SS G_CDS: -9.08 Total: -120.81 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.88 Total: 45.44 kcal Atomic # 16 Polarization: 2.14 SS G_CDS: -1.24 Total: 0.90 kcal Total: -69.87 -1.70 -71.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601261558.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.047 kcal (2) G-P(sol) polarization free energy of solvation -69.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds